Clone RE43246 Report

Search the DGRC for RE43246

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:432
Well:46
Vector:pFlc-1
Associated Gene/TranscriptFuca-RB
Protein status:RE43246.pep: gold
Preliminary Size:1597
Sequenced Size:1689

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6128 2002-01-01 Sim4 clustering to Release 2
CG33047 2002-06-07 Blastp of sequenced clone
Fuca 2008-04-29 Release 5.5 accounting
Fuca 2008-08-15 Release 5.9 accounting
CG11714 2008-08-15 Release 5.9 accounting
CG11714 2008-12-18 5.12 accounting
Fuca 2008-12-18 5.12 accounting

Clone Sequence Records

RE43246.complete Sequence

1689 bp (1689 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119638

> RE43246.complete
AGTGGAGTTTCAATCACGAAGCGAGGCGGTCGCATCACAGTCAGCCAAAA
ATCAAATTGCCGGCTAATTGAGGAAATGGCAATCTCCGCTTGGATGCCGC
TTCTGGTGGCGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCA
CAGGTGCCGGGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGA
CCAGAGACCATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTC
TGCACTACGGCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGG
ACCAACTGGAAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCG
TAATTACAAGCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAG
CGGAGCTATTCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGA
GCCAGATATGTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTG
GCCCTCGAAGAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAAC
GAGATATAGTCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTT
CGTTTTGGACTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGAC
CGATGACAAATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGG
TGCGGCCGGAGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATC
TGGTCCGATGGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGA
GTTCATCGCCTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGA
CCAACGATCGCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTAC
AATTGTGCCGATCGCTTCAATCCCGGTGTTCTGCAAGCTCACAAGTGGGA
AAATGCCTTCACCCTGGATCGCACCAGCTGGGGTCAGCGATTCGATGTCT
CTTTGTCCGATTTTATGACCTCCAAGGAAGTCATTAAAGAGATTATCACC
ACTGTGAGCTGTAATGGCAATGTGCTGATCAATGTTGGACCAACCAAGTT
TGGTACCATACTGCCCATTTTCGAGGAGCGTCTAAGGGACATGGGTCGCT
GGCTGAAGTTCAATGGCGAGGGTATTTACGGCAGTGTACCCTGGATTTAT
CAGAATGATACCATCAATGGAAATGTTTGGTATACGCGGCAAAAGGAGGC
ATCCAATGGAAAAATCACCATATACGCATTTGTGCTGGAGTATCCGTACG
ACACCAATGAACTGGATATCTATCCGCTTGGCAAGGATATCAATATATTC
CGAAATGTAATGCTGACTGGAATCGATATGGGCACCGGTGGAGATATTCT
GAATGAGCAAAGCACTGAGGTTGTCATGTTGGGCATGGAGGATACCAAAA
TTAAGTGGAATGCTGATCATAACCGGCTACACATCGTGTTTCCACCTAAA
AATCACATCGATAAAAGAGGTCTTGACTATGCCTGGACTTTTAAAATAAC
TATAACGTAGTCATAGCCATTTTATAATTATTTTTTTATATATATTTTAA
TATTAACCAGAAATAGTTACTTTCGCTTCGTTTTATACGAAATACAACAT
GATCAACTCATAGCATTAGTTTAAAAAAAAAAAAAAAAA

RE43246.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RA 3513 CG11714-RA 1842..3513 1..1672 8345 99.9 Plus
Fuca-RB 1672 Fuca-RB 1..1672 1..1672 8345 99.9 Plus
Fuca-RA 3513 Fuca-RA 1842..3513 1..1672 8345 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11510436..11510912 1039..563 2280 98.5 Minus
chr3L 24539361 chr3L 11509957..11510374 1455..1038 1955 97.8 Minus
chr3L 24539361 chr3L 11511387..11511699 313..1 1550 99.7 Minus
chr3L 24539361 chr3L 11509675..11509893 1672..1454 1095 100 Minus
chr3L 24539361 chr3L 11511172..11511313 455..314 695 99.3 Minus
chr3L 24539361 chr3L 11510984..11511092 562..454 515 98.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11519558..11520034 1039..563 2385 100 Minus
3L 28110227 3L 11519079..11519496 1455..1038 2090 100 Minus
3L 28110227 3L 11520509..11520821 313..1 1550 99.7 Minus
3L 28110227 3L 11518797..11519016 1673..1454 1100 100 Minus
3L 28110227 3L 11520294..11520435 455..314 710 100 Minus
3L 28110227 3L 11520106..11520214 562..454 545 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11512658..11513134 1039..563 2385 100 Minus
3L 28103327 3L 11512179..11512596 1455..1038 2090 100 Minus
3L 28103327 3L 11513609..11513921 313..1 1550 99.6 Minus
3L 28103327 3L 11511897..11512116 1673..1454 1100 100 Minus
3L 28103327 3L 11513394..11513535 455..314 710 100 Minus
3L 28103327 3L 11513206..11513314 562..454 545 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:56:26 has no hits.

RE43246.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:57:04 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11509957..11510372 1040..1455 97 <- Minus
chr3L 11510436..11510912 563..1039 98 <- Minus
chr3L 11510984..11511090 456..562 98 <- Minus
chr3L 11511172..11511313 314..455 99 <- Minus
chr3L 11511387..11511699 1..313 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:17:08 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1485 76..1560 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:01 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1485 76..1560 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:01 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1485 76..1560 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:17 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1485 76..1560 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:50 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1485 76..1560 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:59:36 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1842..3513 1..1672 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:01 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1672 1..1672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:01 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 4..1675 1..1672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:18 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1842..3513 1..1672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:50 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 4..1675 1..1672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:04 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11518798..11519014 1456..1672 100 <- Minus
3L 11519079..11519494 1040..1455 100 <- Minus
3L 11519558..11520034 563..1039 100 <- Minus
3L 11520106..11520212 456..562 100 <- Minus
3L 11520294..11520435 314..455 100 <- Minus
3L 11520509..11520821 1..313 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:04 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11518798..11519014 1456..1672 100 <- Minus
3L 11519079..11519494 1040..1455 100 <- Minus
3L 11519558..11520034 563..1039 100 <- Minus
3L 11520106..11520212 456..562 100 <- Minus
3L 11520294..11520435 314..455 100 <- Minus
3L 11520509..11520821 1..313 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:04 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11518798..11519014 1456..1672 100 <- Minus
3L 11519079..11519494 1040..1455 100 <- Minus
3L 11519558..11520034 563..1039 100 <- Minus
3L 11520106..11520212 456..562 100 <- Minus
3L 11520294..11520435 314..455 100 <- Minus
3L 11520509..11520821 1..313 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:01 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11511898..11512114 1456..1672 100 <- Minus
arm_3L 11512179..11512594 1040..1455 100 <- Minus
arm_3L 11512658..11513134 563..1039 100 <- Minus
arm_3L 11513206..11513312 456..562 100 <- Minus
arm_3L 11513394..11513535 314..455 100 <- Minus
arm_3L 11513609..11513921 1..313 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:57 Download gff for RE43246.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11511898..11512114 1456..1672 100 <- Minus
3L 11512179..11512594 1040..1455 100 <- Minus
3L 11512658..11513134 563..1039 100 <- Minus
3L 11513206..11513312 456..562 100 <- Minus
3L 11513394..11513535 314..455 100 <- Minus
3L 11513609..11513921 1..313 99   Minus

RE43246.pep Sequence

Translation from 75 to 1559

> RE43246.pep
MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY
DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY
QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW
NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM
QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND
SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT
SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE
ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY
AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV
MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITIT*

RE43246.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Fuca-PA 495 GF24545-PA 1..494 1..493 2337 85.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13916-PA 493 GG13916-PA 1..492 1..493 2533 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16641-PA 488 GH16641-PA 6..488 10..494 2103 78 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Fuca-PC 494 CG6128-PC 1..494 1..494 2719 100 Plus
Fuca-PB 494 CG6128-PB 1..494 1..494 2719 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11597-PA 492 GI11597-PA 8..492 10..494 2181 80.2 Plus
Dmoj\GI11596-PA 1030 GI11596-PA 561..1029 25..493 2158 80.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22821-PA 414 GL22821-PA 52..414 133..494 1651 81.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23876-PA 468 GA23876-PA 2..468 29..494 2163 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24746-PA 494 GM24746-PA 1..494 1..494 2620 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Fuca-PA 503 GD17581-PA 1..494 1..494 2597 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Fuca-PA 494 GJ11276-PA 26..492 28..494 2204 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17022-PA 493 GK17022-PA 6..491 10..493 2180 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Fuca-PA 494 GE20211-PA 1..494 1..494 2500 92.9 Plus

RE43246.hyp Sequence

Translation from 75 to 1559

> RE43246.hyp
MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY
DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY
QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW
NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM
QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND
SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT
SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE
ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY
AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV
MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITIT*

RE43246.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
Fuca-PC 494 CG6128-PC 1..494 1..494 2719 100 Plus
Fuca-PB 494 CG6128-PB 1..494 1..494 2719 100 Plus