BDGP Sequence Production Resources |
Search the DGRC for RE43246
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 432 |
Well: | 46 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Fuca-RB |
Protein status: | RE43246.pep: gold |
Preliminary Size: | 1597 |
Sequenced Size: | 1689 |
Gene | Date | Evidence |
---|---|---|
CG6128 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33047 | 2002-06-07 | Blastp of sequenced clone |
Fuca | 2008-04-29 | Release 5.5 accounting |
Fuca | 2008-08-15 | Release 5.9 accounting |
CG11714 | 2008-08-15 | Release 5.9 accounting |
CG11714 | 2008-12-18 | 5.12 accounting |
Fuca | 2008-12-18 | 5.12 accounting |
1689 bp (1689 high quality bases) assembled on 2002-06-07
GenBank Submission: AY119638
> RE43246.complete AGTGGAGTTTCAATCACGAAGCGAGGCGGTCGCATCACAGTCAGCCAAAA ATCAAATTGCCGGCTAATTGAGGAAATGGCAATCTCCGCTTGGATGCCGC TTCTGGTGGCGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCA CAGGTGCCGGGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGA CCAGAGACCATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTC TGCACTACGGCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGG ACCAACTGGAAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCG TAATTACAAGCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAG CGGAGCTATTCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGA GCCAGATATGTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTG GCCCTCGAAGAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAAC GAGATATAGTCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTT CGTTTTGGACTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGAC CGATGACAAATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGG TGCGGCCGGAGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATC TGGTCCGATGGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGA GTTCATCGCCTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGA CCAACGATCGCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTAC AATTGTGCCGATCGCTTCAATCCCGGTGTTCTGCAAGCTCACAAGTGGGA AAATGCCTTCACCCTGGATCGCACCAGCTGGGGTCAGCGATTCGATGTCT CTTTGTCCGATTTTATGACCTCCAAGGAAGTCATTAAAGAGATTATCACC ACTGTGAGCTGTAATGGCAATGTGCTGATCAATGTTGGACCAACCAAGTT TGGTACCATACTGCCCATTTTCGAGGAGCGTCTAAGGGACATGGGTCGCT GGCTGAAGTTCAATGGCGAGGGTATTTACGGCAGTGTACCCTGGATTTAT CAGAATGATACCATCAATGGAAATGTTTGGTATACGCGGCAAAAGGAGGC ATCCAATGGAAAAATCACCATATACGCATTTGTGCTGGAGTATCCGTACG ACACCAATGAACTGGATATCTATCCGCTTGGCAAGGATATCAATATATTC CGAAATGTAATGCTGACTGGAATCGATATGGGCACCGGTGGAGATATTCT GAATGAGCAAAGCACTGAGGTTGTCATGTTGGGCATGGAGGATACCAAAA TTAAGTGGAATGCTGATCATAACCGGCTACACATCGTGTTTCCACCTAAA AATCACATCGATAAAAGAGGTCTTGACTATGCCTGGACTTTTAAAATAAC TATAACGTAGTCATAGCCATTTTATAATTATTTTTTTATATATATTTTAA TATTAACCAGAAATAGTTACTTTCGCTTCGTTTTATACGAAATACAACAT GATCAACTCATAGCATTAGTTTAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 11510436..11510912 | 1039..563 | 2280 | 98.5 | Minus |
chr3L | 24539361 | chr3L | 11509957..11510374 | 1455..1038 | 1955 | 97.8 | Minus |
chr3L | 24539361 | chr3L | 11511387..11511699 | 313..1 | 1550 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 11509675..11509893 | 1672..1454 | 1095 | 100 | Minus |
chr3L | 24539361 | chr3L | 11511172..11511313 | 455..314 | 695 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 11510984..11511092 | 562..454 | 515 | 98.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 11519558..11520034 | 1039..563 | 2385 | 100 | Minus |
3L | 28110227 | 3L | 11519079..11519496 | 1455..1038 | 2090 | 100 | Minus |
3L | 28110227 | 3L | 11520509..11520821 | 313..1 | 1550 | 99.7 | Minus |
3L | 28110227 | 3L | 11518797..11519016 | 1673..1454 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 11520294..11520435 | 455..314 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11520106..11520214 | 562..454 | 545 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 11512658..11513134 | 1039..563 | 2385 | 100 | Minus |
3L | 28103327 | 3L | 11512179..11512596 | 1455..1038 | 2090 | 100 | Minus |
3L | 28103327 | 3L | 11513609..11513921 | 313..1 | 1550 | 99.6 | Minus |
3L | 28103327 | 3L | 11511897..11512116 | 1673..1454 | 1100 | 100 | Minus |
3L | 28103327 | 3L | 11513394..11513535 | 455..314 | 710 | 100 | Minus |
3L | 28103327 | 3L | 11513206..11513314 | 562..454 | 545 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 11509957..11510372 | 1040..1455 | 97 | <- | Minus |
chr3L | 11510436..11510912 | 563..1039 | 98 | <- | Minus |
chr3L | 11510984..11511090 | 456..562 | 98 | <- | Minus |
chr3L | 11511172..11511313 | 314..455 | 99 | <- | Minus |
chr3L | 11511387..11511699 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 1..1485 | 76..1560 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 1..1485 | 76..1560 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 1..1485 | 76..1560 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 1..1485 | 76..1560 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 1..1485 | 76..1560 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11714-RA | 1842..3513 | 1..1672 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 1..1672 | 1..1672 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 4..1675 | 1..1672 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11714-RA | 1842..3513 | 1..1672 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fuca-RB | 4..1675 | 1..1672 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11518798..11519014 | 1456..1672 | 100 | <- | Minus |
3L | 11519079..11519494 | 1040..1455 | 100 | <- | Minus |
3L | 11519558..11520034 | 563..1039 | 100 | <- | Minus |
3L | 11520106..11520212 | 456..562 | 100 | <- | Minus |
3L | 11520294..11520435 | 314..455 | 100 | <- | Minus |
3L | 11520509..11520821 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11518798..11519014 | 1456..1672 | 100 | <- | Minus |
3L | 11519079..11519494 | 1040..1455 | 100 | <- | Minus |
3L | 11519558..11520034 | 563..1039 | 100 | <- | Minus |
3L | 11520106..11520212 | 456..562 | 100 | <- | Minus |
3L | 11520294..11520435 | 314..455 | 100 | <- | Minus |
3L | 11520509..11520821 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11518798..11519014 | 1456..1672 | 100 | <- | Minus |
3L | 11519079..11519494 | 1040..1455 | 100 | <- | Minus |
3L | 11519558..11520034 | 563..1039 | 100 | <- | Minus |
3L | 11520106..11520212 | 456..562 | 100 | <- | Minus |
3L | 11520294..11520435 | 314..455 | 100 | <- | Minus |
3L | 11520509..11520821 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 11511898..11512114 | 1456..1672 | 100 | <- | Minus |
arm_3L | 11512179..11512594 | 1040..1455 | 100 | <- | Minus |
arm_3L | 11512658..11513134 | 563..1039 | 100 | <- | Minus |
arm_3L | 11513206..11513312 | 456..562 | 100 | <- | Minus |
arm_3L | 11513394..11513535 | 314..455 | 100 | <- | Minus |
arm_3L | 11513609..11513921 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11511898..11512114 | 1456..1672 | 100 | <- | Minus |
3L | 11512179..11512594 | 1040..1455 | 100 | <- | Minus |
3L | 11512658..11513134 | 563..1039 | 100 | <- | Minus |
3L | 11513206..11513312 | 456..562 | 100 | <- | Minus |
3L | 11513394..11513535 | 314..455 | 100 | <- | Minus |
3L | 11513609..11513921 | 1..313 | 99 | Minus |
Translation from 75 to 1559
> RE43246.pep MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITIT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Fuca-PA | 495 | GF24545-PA | 1..494 | 1..493 | 2337 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13916-PA | 493 | GG13916-PA | 1..492 | 1..493 | 2533 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16641-PA | 488 | GH16641-PA | 6..488 | 10..494 | 2103 | 78 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fuca-PC | 494 | CG6128-PC | 1..494 | 1..494 | 2719 | 100 | Plus |
Fuca-PB | 494 | CG6128-PB | 1..494 | 1..494 | 2719 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11597-PA | 492 | GI11597-PA | 8..492 | 10..494 | 2181 | 80.2 | Plus |
Dmoj\GI11596-PA | 1030 | GI11596-PA | 561..1029 | 25..493 | 2158 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22821-PA | 414 | GL22821-PA | 52..414 | 133..494 | 1651 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23876-PA | 468 | GA23876-PA | 2..468 | 29..494 | 2163 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24746-PA | 494 | GM24746-PA | 1..494 | 1..494 | 2620 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Fuca-PA | 503 | GD17581-PA | 1..494 | 1..494 | 2597 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Fuca-PA | 494 | GJ11276-PA | 26..492 | 28..494 | 2204 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17022-PA | 493 | GK17022-PA | 6..491 | 10..493 | 2180 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Fuca-PA | 494 | GE20211-PA | 1..494 | 1..494 | 2500 | 92.9 | Plus |
Translation from 75 to 1559
> RE43246.hyp MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITIT*