RE43371.complete Sequence
568 bp (568 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113473
> RE43371.complete
ATCCAGTCTTTCGATTAACTTTGACTCAATATGAAGCTCCACTGGCTGCT
ATTAGCAGTCGTACTGATCTGTGCCCTGTACAGCGCTACGGGCACCAGCC
CCACCACGGAAACCAGCACCAGCACCGAGTCGACCACCGCTACGGGCTCA
AGCACTTCGACAACCTCGGCCAGCACCTCCTCCTCATCCTCGGACACCAC
CGAGGCCAGCAGCAGCAGCAGCGATTCGTCCACCAGTTCCAGCAGCTCGT
CCTCTAGCTCCAGCAGTTCATCCAAGAAGAAGGCTGCCGCCAGAAGGAGG
CGTGCCGCTCGCAGGAGGCGTCGTGCCGCACGCAGGAGACGTGCTGCTGC
CGCTCGCAGGCGCGCCCAGCGCAGGCGCAACAGGGGTTAGACTGGAAACC
GCGATTGGAGGGGGGTGGGGGAATCCACTAGAATCCACTTGAATCCACCC
ATTCCGGCCTAGACAGGACTTTCAACGTTTTTTTTTTTCCAACACTCTCT
GTTGATCCTCGGGATCGCCAATTTAATATATTCCCGGCTATGGTTATTGC
ATGAAAAAAAAAAAAAAA
RE43371.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14265-RB | 559 | CG14265-RB | 1..558 | 1..558 | 2790 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 3129738..3130297 | 553..1 | 2535 | 97.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3236125..3236682 | 558..1 | 2790 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 3244223..3244780 | 558..1 | 2790 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 05:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord | 7404 | accord ACCORD 7404bp | 6568..6612 | 506..462 | 108 | 71.1 | Minus |
RE43371.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:57:31 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 3129738..3130297 | 1..553 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:17:10 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..360 | 31..390 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:08:21 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..360 | 31..390 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:30:16 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..360 | 31..390 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:53:13 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..360 | 31..390 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:10:13 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..360 | 31..390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:59:08 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..553 | 1..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:08:21 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..553 | 1..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:16 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 5..557 | 1..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:53:14 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 1..553 | 1..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:10:13 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14265-RB | 5..557 | 1..553 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:31 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3236130..3236682 | 1..553 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:31 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3236130..3236682 | 1..553 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:31 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3236130..3236682 | 1..553 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:16 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3130163..3130715 | 1..553 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:28:13 Download gff for
RE43371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3244228..3244780 | 1..553 | 100 | | Minus |
RE43371.pep Sequence
Translation from 30 to 389
> RE43371.pep
MKLHWLLLAVVLICALYSATGTSPTTETSTSTESTTATGSSTSTTSASTS
SSSSDTTEASSSSSDSSTSSSSSSSSSSSSSKKKAAARRRRAARRRRRAA
RRRRAAAARRRAQRRRNRG*
RE43371.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14265-PB | 119 | CG14265-PB | 1..119 | 1..119 | 556 | 100 | Plus |
CG14453-PA | 133 | CG14453-PA | 1..117 | 1..118 | 238 | 49.2 | Plus |
CG14454-PB | 120 | CG14454-PB | 1..103 | 1..118 | 205 | 46.6 | Plus |
CG14454-PA | 120 | CG14454-PA | 1..103 | 1..118 | 205 | 46.6 | Plus |
CG32453-PB | 120 | CG32453-PB | 1..103 | 1..118 | 205 | 46.6 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..103 | 1..118 | 205 | 46.6 | Plus |
CG13560-PB | 181 | CG13560-PB | 78..180 | 19..116 | 197 | 50.5 | Plus |
CG13560-PA | 181 | CG13560-PA | 78..180 | 19..116 | 197 | 50.5 | Plus |
CG12546-PA | 117 | CG12546-PA | 1..109 | 1..118 | 192 | 40.7 | Plus |
CG14452-PA | 117 | CG14452-PA | 1..109 | 1..118 | 192 | 40.7 | Plus |
CG14852-PA | 174 | CG14852-PA | 67..164 | 22..118 | 184 | 47.1 | Plus |
CG14453-PA | 133 | CG14453-PA | 44..125 | 18..118 | 181 | 45.1 | Plus |
CG12491-PA | 157 | CG12491-PA | 12..145 | 10..118 | 181 | 41 | Plus |
CG34105-PA | 157 | CG34105-PA | 12..145 | 10..118 | 181 | 41 | Plus |
CG12491-PA | 157 | CG12491-PA | 45..148 | 18..118 | 175 | 38.5 | Plus |
CG34105-PA | 157 | CG34105-PA | 45..148 | 18..118 | 175 | 38.5 | Plus |
CG32071-PA | 150 | CG32071-PA | 19..130 | 6..119 | 171 | 38.7 | Plus |
CG3918-PA | 321 | CG3918-PA | 203..298 | 23..118 | 169 | 36.5 | Plus |
CG14850-PA | 158 | CG14850-PA | 50..154 | 19..118 | 164 | 40 | Plus |
CG12491-PA | 157 | CG12491-PA | 54..155 | 18..118 | 162 | 38.8 | Plus |
CG34105-PA | 157 | CG34105-PA | 54..155 | 18..118 | 162 | 38.8 | Plus |
CG12522-PA | 137 | CG12522-PA | 9..110 | 6..114 | 161 | 39.1 | Plus |
CG34273-PA | 128 | CG34273-PA | 1..124 | 1..114 | 154 | 37.1 | Plus |
CG15741-PA | 135 | CG15741-PA | 31..132 | 19..118 | 148 | 37.5 | Plus |
CG15741-PA | 135 | CG15741-PA | 1..127 | 1..118 | 146 | 30.5 | Plus |
ng3-PB | 146 | CG10788-PB | 7..144 | 6..102 | 143 | 35.5 | Plus |
ng2-PA | 112 | CG14266-PA | 8..111 | 6..113 | 140 | 35.2 | Plus |
CG11300-PA | 157 | CG11300-PA | 45..140 | 19..119 | 138 | 40.8 | Plus |
ng1-PA | 107 | CG10781-PA | 8..104 | 6..115 | 137 | 33.6 | Plus |
ng2-PA | 112 | CG14266-PA | 5..108 | 11..118 | 136 | 32.1 | Plus |
CG9040-PA | 161 | CG9040-PA | 40..127 | 26..108 | 136 | 39.8 | Plus |
CG32198-PB | 136 | CG32198-PB | 4..120 | 2..119 | 135 | 33.9 | Plus |
RE43371.hyp Sequence
Translation from 30 to 389
> RE43371.hyp
MKLHWLLLAVVLICALYSATGTSPTTETSTSTESTTATGSSTSTTSASTS
SSSSDTTEASSSSSDSSTSSSSSSSSSSSSSKKKAAARRRRAARRRRRAA
RRRRAAAARRRAQRRRNRG*
RE43371.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14265-PB | 119 | CG14265-PB | 1..119 | 1..119 | 556 | 100 | Plus |
CG14453-PA | 133 | CG14453-PA | 1..117 | 1..118 | 238 | 49.2 | Plus |
CG32453-PB | 120 | CG32453-PB | 1..103 | 1..118 | 205 | 46.6 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..103 | 1..118 | 205 | 46.6 | Plus |
CG14454-PB | 120 | CG14454-PB | 1..103 | 1..118 | 205 | 46.6 | Plus |
CG14453-PA | 133 | CG14453-PA | 44..125 | 18..118 | 181 | 45.1 | Plus |