Clone RE43738 Report

Search the DGRC for RE43738

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:437
Well:38
Vector:pFlc-1
Associated Gene/TranscriptUbx-RE
Protein status:RE43738.pep: gold
Preliminary Size:6476
Sequenced Size:3133

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10388 2002-01-01 Sim4 clustering to Release 2
CG10388 2003-01-01 Sim4 clustering to Release 3
CG10388 2003-08-12 Blastp of sequenced clone
Ubx 2008-04-29 Release 5.5 accounting
Ubx 2008-08-15 Release 5.9 accounting
Ubx 2008-12-18 5.12 accounting

Clone Sequence Records

RE43738.complete Sequence

3133 bp (3133 high quality bases) assembled on 2005-08-25

GenBank Submission: BT010241

> RE43738.complete
ACGTTCGTTCGATGGCAACGGATTGGATAACAGGCGCGCGCTTTGTTTTA
TTATCCACATTATCAGCTGCATTATTGTTATTATTGGCCCTCAGCGCTTT
ACCGCTCGCCCACGCGTCCGCCCGTGAATGCCGCGCGGAAAAGTCGCTTT
CCACTAGATTGGCGTCCAGATTCGAGGAAATCCGTCAGCAGACGCATTCG
CGCCCGTTCGGTCAGCACTATGGCTAATAATCGTTCAAATCGTTAAAACC
ATAAAAATAATAATAATAATTGCAATAACAATAAACATAGTAATAATCGT
AACGCTTACGAGCCTTTGATAGTGCCAAGGCAAGCGCAATCCAAGTATTC
AAATTCGAATTCAATTAACAGCAAAGTGCAATTGGCTAAAAACCGAAACC
AAAACGCAACAAAGTATACGAAACACTTGTGAAACCGTACAAACAATTGT
GGAAAAAAATTTAAAGATTATTAAGATTGAAGTCTCAATAAACATTAGTG
CTTAAATAAATTTAAAACGACCCGCGTGGAGAGTGCAATAAAAAGAATAA
CTTTTGAAATAAATATTTACCAAACAGAAAAATATTTTATAAATATTTAA
ATAAGTGAAAAACAAATTGGTTACTCTGAAACAAAGAAAATTCAAATTGG
TGCTAAAACAAAGGAGAAAAAATTTCAAGAATATTTTACAAATAATAAGA
CATATTTAACTATATAAAACCAAACTTAATCAACAAAGACTTGGAGTGAA
AATATAAAATAAATTTTAAAAAGAGTTTAACAAAATTTGTTTAAATCCAA
AGGAGGCAAAGGAACAGCACAGAAAGCGAGGAAACACTCAAATAAAATCC
GCCAAAAATCGCAGATCCCTGGAAACCAATTCGTGTGAAATCGGTCAAGC
CCCCAACGACTTTTAGCCCGTCTCAGACGGAGCACCGCCAAGATTCTTAC
CGCCAGCAGCGCAATGAACTCGTACTTTGAACAGGCCTCCGGCTTTTATG
GCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCACCAC
GACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCTCTC
GCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCCAGG
ACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATACGGC
GATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGATGC
GGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCGGCG
GGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGTGGA
GCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAACAA
TCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATTCCC
GAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCATCGC
GGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAACGC
CGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCTGGA
ATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCCAGC
AGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTATCGC
AGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAGACA
TGGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGACTGG
CTAGGTACAAATGGTCTGCGAAGACGCGGCCGACAGACATACACCCGCTA
CCAGACGCTCGAGCTGGAGAAGGAGTTCCACACGAATCATTATCTGACCC
GCAGACGGAGAATCGAGATGGCGCACGCGCTATGCCTGACGGAGCGGCAG
ATCAAGATCTGGTTCCAGAACCGGCGAATGAAGCTGAAGAAGGAGATCCA
GGCGATCAAGGAGCTGAACGAACAGGAGAAGCAGGCGCAGGCCCAGAAGG
CGGCGGCGGCAGCGGCTGCGGCGGCGGCGGTCCAAGGTGGACACTTAGAT
CAGTAGATCCTTAGATCCTTAGATCCTTAGATCCGTAGGGTGTATGTGGG
ATTGGGCGAAATGACGCGGAGACAGATACAAAGCAACTATATTGTAACAA
ATGAACTATTTACTTAAATGAATAATATTTAAATATTTTGATGGTACTTG
TGCGAATACGAAACTTAACCTAAATCGAACCTAATGGAATTATTTCAAGC
GTTTGAGCAGCAACCGAAAATACGTAAATGAAACAAAACTACAAACTAAT
TAACTAGGCTAAGTAAATAAAAGTAGTGGAAGGAGCGCAGATTATAAACC
TACTTAGAATTAAATGAGCAAAACAAACAATTTTAATTTAGTTCCAAACG
AAAAAAAAATTCAAGAGGATTCGCTCGAAATGGAAACCTCTGTCCTGCCC
CTTTGTTGCTTACTGCTATGTTTAAATTAATTTCGCGAAAAATACTCAAA
AATTGAAACACAAAGAAAACAAAAAATGAAAGTATACCATTATAATGTTG
AATGCGAGCAAAATTCTGTTGATATGAATTTTTGGTAAAAACATGTTCTA
AACCAATTTAAGATACGTAACGAAGGATGCAAAAACAAAATGAAAACTAT
TAAACTTTAACTTAAATATAAATAGAATTTGTTAGCCAAGTAAACATATT
ACGACACGAAGAACAAACGTTTTCGGGAGTATCGAATATTTGAATGTGTA
TAGTTTGTGCTTATTAAATAAAATAATGCAATTTTAGTTAACTCTGTTTA
TTTGTAAACGAATTTGTTTAGTTCTCGCCCAAACGACTAGAGTGAAGCTG
TTTCTTTAAGTAATGTGTAGTGTGTTTACTTTTTAAATTAAATTAATGCC
TAATTTTATTATTATTATGTTTAGTTTAATGACAAGCGTTTATGAGATTA
TCCGACAGAAGCGGCGAGAAGAGGAGTGCGACAAACCGTTTGCCCCGGCA
AACGCAAATAAATTATTGGTTTTGAAAAAATCTAAAGAAAACAAAAAAAA
AAAACAATGAGAAATCGAAAAAAAAAAAAAAAA

RE43738.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-RE 4732 Ubx-RE 204..3319 4..3119 15565 99.9 Plus
Ubx-RD 4681 Ubx-RD 204..1908 4..1708 8510 99.9 Plus
Ubx-RA 4729 Ubx-RA 204..1904 4..1704 8490 99.9 Plus
Ubx-RA 4729 Ubx-RA 1930..3346 1703..3119 7085 100 Plus
Ubx-RD 4681 Ubx-RD 1902..3268 1753..3119 6835 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12557251..12558952 1704..4 8355 99.5 Minus
chr3R 27901430 chr3R 12482323..12483638 3117..1803 6530 99.9 Minus
chr3R 27901430 chr3R 2651289..2651446 1995..1838 490 87.3 Minus
chr3R 27901430 chr3R 12634634..12634841 2026..1819 395 79.3 Minus
chr3R 27901430 chr3R 2724224..2724396 1996..1824 370 80.9 Minus
chr3R 27901430 chr3R 12549767..12549826 1759..1700 300 100 Minus
chr3R 27901430 chr3R 12535082..12535136 1807..1753 275 100 Minus
chr3R 27901430 chr3R 2626824..2626978 1840..1994 250 77.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16732723..16734423 1704..4 8490 99.9 Minus
3R 32079331 3R 16657759..16659075 3119..1803 6585 100 Minus
3R 32079331 3R 6825490..6825647 1995..1838 490 87.3 Minus
3R 32079331 3R 16810131..16810338 2026..1819 395 79.3 Minus
3R 32079331 3R 6898359..6898531 1996..1824 385 81.5 Minus
3R 32079331 3R 16725250..16725309 1759..1700 300 100 Minus
3R 32079331 3R 16710559..16710613 1807..1753 275 100 Minus
3R 32079331 3R 6801029..6801183 1840..1994 250 77.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16473554..16475254 1704..4 8490 99.9 Minus
3R 31820162 3R 16398590..16399906 3119..1803 6585 100 Minus
3R 31820162 3R 6566321..6566478 1995..1838 490 87.3 Minus
3R 31820162 3R 6639190..6639362 1996..1824 385 81.5 Minus
3R 31820162 3R 16466081..16466140 1759..1700 300 100 Minus
3R 31820162 3R 16550962..16551076 2026..1912 275 82.6 Minus
3R 31820162 3R 16451390..16451444 1807..1753 275 100 Minus
3R 31820162 3R 6541960..6542014 1940..1994 215 92.7 Plus
3R 31820162 3R 6606142..6606193 1830..1881 185 90.3 Plus
3R 31820162 3R 16551107..16551169 1881..1819 180 85.7 Minus
3R 31820162 3R 6606258..6606306 1946..1994 170 89.7 Plus
Blast to na_te.dros performed 2019-03-16 12:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 6348..6491 2824..2673 145 60.8 Minus
accord2 7650 accord2 QBERT 7650bp 6990..7080 796..707 137 62.6 Minus
gypsy9 5349 gypsy9 GYPSY9 5349bp 1889..1972 2363..2445 120 61.9 Plus

RE43738.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:24:32 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12482323..12483636 1805..3117 94 <- Minus
chr3R 12535085..12535135 1754..1804 100 <- Minus
chr3R 12549773..12549823 1703..1753 100 <- Minus
chr3R 12557253..12557396 1559..1702 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:26:10 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1..1143 964..2106 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:20 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1..1143 964..2106 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:16:46 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1..1143 964..2106 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:04 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1..1143 964..2106 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:52 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1..1143 964..2106 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:26:09 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 201..3317 1..3117 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:20 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 201..3317 1..3117 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:16:46 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 201..3317 1..3117 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:04 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 201..3317 1..3117 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:52 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1..3117 1..3117 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:32 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16710562..16710612 1754..1804 100 <- Minus
3R 16725256..16725306 1703..1753 100 <- Minus
3R 16657761..16659073 1805..3117 100 <- Minus
3R 16732725..16734426 1..1702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:32 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16710562..16710612 1754..1804 100 <- Minus
3R 16725256..16725306 1703..1753 100 <- Minus
3R 16657761..16659073 1805..3117 100 <- Minus
3R 16732725..16734426 1..1702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:32 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16710562..16710612 1754..1804 100 <- Minus
3R 16725256..16725306 1703..1753 100 <- Minus
3R 16657761..16659073 1805..3117 100 <- Minus
3R 16732725..16734426 1..1702 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:16:46 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12550978..12551028 1703..1753 100 <- Minus
arm_3R 12483483..12484795 1805..3117 100 <- Minus
arm_3R 12536284..12536334 1754..1804 100 <- Minus
arm_3R 12558447..12560148 1..1702 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:38 Download gff for RE43738.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16398592..16399904 1805..3117 100 <- Minus
3R 16451393..16451443 1754..1804 100 <- Minus
3R 16466087..16466137 1703..1753 100 <- Minus
3R 16473556..16475257 1..1702 99   Minus

RE43738.pep Sequence

Translation from 963 to 2105

> RE43738.pep
MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS
PYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGY
KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGG
MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQ
SGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGKIR
SDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLE
LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ*

RE43738.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17924-PA 391 GF17924-PA 1..389 1..379 1856 94.1 Plus
Dana\GF17922-PA 596 GF17922-PA 371..481 240..367 392 58.5 Plus
Dana\GF17789-PA 378 GF17789-PA 280..355 268..344 328 75.3 Plus
Dana\GF17790-PA 447 GF17790-PA 317..381 280..344 302 80 Plus
Dana\GF17190-PA 430 GF17190-PA 267..324 287..344 274 79.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Ubx-PA 381 GG16812-PA 1..381 1..380 1980 99.7 Plus
Dere\GG16810-PA 592 GG16810-PA 369..479 240..367 394 58.5 Plus
Dere\Antp-PA 374 GG10169-PA 276..351 268..344 327 75.3 Plus
Dere\GG10180-PA 467 GG10180-PA 368..432 280..344 303 80 Plus
Dere\ftz-PA 420 GG13687-PA 261..318 287..344 274 79.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19471-PA 382 GH19471-PA 1..381 1..380 1366 83.8 Plus
Dgri\GH18074-PA 529 GH18074-PA 295..415 246..367 394 61.6 Plus
Dgri\GH19475-PA 385 GH19475-PA 290..362 271..344 324 77 Plus
Dgri\GH19477-PA 576 GH19477-PA 327..391 280..344 306 80 Plus
Dgri\GH19476-PA 486 GH19476-PA 308..365 287..344 279 79.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-PE 380 CG10388-PE 1..380 1..380 2023 100 Plus
Ubx-PA 389 CG10388-PA 1..389 1..380 2003 97.7 Plus
Ubx-PC 372 CG10388-PC 1..372 1..380 1924 96.1 Plus
Ubx-PD 363 CG10388-PD 1..363 1..380 1908 95.5 Plus
Ubx-PF 355 CG10388-PF 1..355 1..380 1817 91.6 Plus
Ubx-PB 346 CG10388-PB 1..346 1..380 1801 91.1 Plus
abd-A-PB 590 CG10325-PB 220..494 132..380 365 37.6 Plus
abd-A-PD 330 CG10325-PD 59..234 213..380 360 48.3 Plus
abd-A-PC 330 CG10325-PC 59..234 213..380 360 48.3 Plus
abd-A-PA 330 CG10325-PA 59..234 213..380 360 48.3 Plus
Scr-PB 417 CG1030-PB 177..382 122..344 319 39.1 Plus
Scr-PA 417 CG1030-PA 177..382 122..344 319 39.1 Plus
Antp-PK 361 CG1028-PK 263..338 268..344 294 75.3 Plus
Antp-PG 361 CG1028-PG 263..338 268..344 294 75.3 Plus
Antp-PN 374 CG1028-PN 276..351 268..344 294 75.3 Plus
Antp-PD 374 CG1028-PD 276..351 268..344 294 75.3 Plus
Antp-PF 365 CG1028-PF 284..342 286..344 286 91.5 Plus
Antp-PE 365 CG1028-PE 284..342 286..344 286 91.5 Plus
Antp-PJ 378 CG1028-PJ 297..355 286..344 286 91.5 Plus
Antp-PI 378 CG1028-PI 297..355 286..344 286 91.5 Plus
Antp-PL 378 CG1028-PL 297..355 286..344 286 91.5 Plus
Antp-PM 378 CG1028-PM 297..355 286..344 286 91.5 Plus
ftz-PA 410 CG2047-PA 255..312 287..344 244 79.3 Plus
pb-PA 782 CG31481-PA 38..256 116..344 237 30.6 Plus
Dfd-PA 586 CG2189-PA 367..440 287..360 235 63.5 Plus
pb-PC 777 CG31481-PC 38..251 116..344 232 31.5 Plus
cad-PC 445 CG1759-PC 122..349 105..344 230 30 Plus
pb-PB 777 CG31481-PB 38..251 116..344 229 31.5 Plus
pb-PD 772 CG31481-PD 38..246 116..344 223 31 Plus
cad-PB 427 CG1759-PB 122..331 105..344 213 28 Plus
cad-PA 427 CG1759-PA 122..331 105..344 213 28 Plus
Abd-B-PJ 270 CG11648-PJ 68..253 209..377 211 33.3 Plus
Abd-B-PI 270 CG11648-PI 68..253 209..377 211 33.3 Plus
Abd-B-PE 270 CG11648-PE 68..253 209..377 211 33.3 Plus
Abd-B-PD 270 CG11648-PD 68..253 209..377 211 33.3 Plus
Abd-B-PA 270 CG11648-PA 68..253 209..377 211 33.3 Plus
Abd-B-PC 270 CG11648-PC 68..253 209..377 211 33.3 Plus
Abd-B-PG 286 CG11648-PG 68..253 209..377 211 33.3 Plus
Abd-B-PF 323 CG11648-PF 68..253 209..377 211 33.3 Plus
Abd-B-PH 493 CG11648-PH 291..476 209..377 211 33.3 Plus
Abd-B-PB 493 CG11648-PB 291..476 209..377 211 33.3 Plus
lab-PB 213 CG1264-PB 15..145 191..346 208 38.2 Plus
lab-PA 629 CG1264-PA 431..561 191..346 208 38.2 Plus
zen-PA 353 CG1046-PA 91..170 287..366 207 53.8 Plus
Vsx1-PB 837 CG4136-PB 142..452 28..343 206 27.7 Plus
Vsx1-PA 837 CG4136-PA 142..452 28..343 206 27.7 Plus
exex-PA 525 CG8254-PA 437..525 284..372 198 47.2 Plus
zen2-PB 232 CG1048-PB 24..80 287..343 195 63.2 Plus
zen2-PA 252 CG1048-PA 44..100 287..343 195 63.2 Plus
ro-PB 350 CG6348-PB 189..248 284..343 180 60 Plus
CG5172-PD 172 CG5172-PD 30..129 107..220 179 37.7 Plus
CG5172-PD 172 CG5172-PD 72..171 107..204 152 36.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24708-PA 379 GI24708-PA 1..378 1..380 1378 85.4 Plus
Dmoj\GI23753-PA 529 GI23753-PA 272..415 203..367 396 49.7 Plus
Dmoj\GI24713-PA 378 GI24713-PA 283..355 271..344 323 77 Plus
Dmoj\GI24715-PA 418 GI24715-PA 319..383 280..344 305 80 Plus
Dmoj\GI24714-PA 454 GI24714-PA 267..324 287..344 272 77.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23004-PA 387 GL23004-PA 1..386 1..380 1392 88.4 Plus
Dper\GL23002-PA 562 GL23002-PA 345..455 240..367 392 58.5 Plus
Dper\GL22036-PA 395 GL22036-PA 297..372 268..344 327 75.3 Plus
Dper\GL22040-PA 472 GL22040-PA 329..393 280..344 303 80 Plus
Dper\GL21778-PA 471 GL21778-PA 291..348 287..344 277 77.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Ubx-PA 385 GA10294-PA 1..384 1..380 1392 87.4 Plus
Dpse\Ubx-PC 368 GA10294-PC 1..367 1..380 1274 83.2 Plus
Dpse\Ubx-PB 360 GA10294-PB 1..359 1..380 1184 79.4 Plus
Dpse\GA26453-PA 560 GA26453-PA 343..453 240..367 392 58.5 Plus
Dpse\Antp-PA 392 GA10215-PA 294..369 268..344 327 75.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Ubx-PA 136 GM15409-PA 1..117 1..117 619 100 Plus
Dsec\GM15411-PA 201 GM15411-PA 84..201 261..380 533 85 Plus
Dsec\GM15410-PA 114 GM15410-PA 1..106 151..256 455 92.5 Plus
Dsec\GM15405-PA 588 GM15405-PA 367..477 240..367 393 58.5 Plus
Dsec\GM10522-PA 374 GM10522-PA 276..351 268..344 327 75.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Ubx-PA 338 GD20270-PA 1..338 1..380 1220 75.4 Plus
Dsim\GD20268-PA 631 GD20268-PA 410..520 240..367 391 58.5 Plus
Dsim\GD19515-PA 374 GD19515-PA 276..351 268..344 327 75.3 Plus
Dsim\GD19518-PA 463 GD19518-PA 364..428 280..344 302 80 Plus
Dsim\ftz-PA 413 GD19897-PA 258..315 287..344 274 79.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ubx-PA 378 GJ23925-PA 1..377 1..380 1410 85.4 Plus
Dvir\abd-A-PA 522 GJ10599-PA 262..405 203..367 394 49.7 Plus
Dvir\Antp-PA 376 GJ23927-PA 281..353 271..344 325 77 Plus
Dvir\GJ23929-PA 303 GJ23929-PA 91..155 280..344 295 80 Plus
Dvir\GJ23928-PA 464 GJ23928-PA 288..345 287..344 271 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13855-PA 384 GK13855-PA 1..383 1..380 1439 90.4 Plus
Dwil\GK13853-PA 582 GK13853-PA 323..466 203..367 394 49.7 Plus
Dwil\GK10824-PA 374 GK10824-PA 276..351 268..344 327 75.3 Plus
Dwil\GK10826-PA 428 GK10826-PA 314..378 280..344 302 80 Plus
Dwil\GK10825-PA 430 GK10825-PA 274..331 287..344 289 82.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Ubx-PA 381 GE26131-PA 1..381 1..380 1974 99.5 Plus
Dyak\GE26127-PA 590 GE26127-PA 369..479 240..367 394 58.5 Plus
Dyak\GE25826-PA 375 GE25826-PA 277..352 268..344 327 75.3 Plus
Dyak\GE25827-PA 419 GE25827-PA 320..384 280..344 304 80 Plus
Dyak\GE24884-PA 421 GE24884-PA 262..319 287..344 275 79.3 Plus

RE43738.hyp Sequence

Translation from 963 to 2105

> RE43738.hyp
MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS
PYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGY
KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGG
MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQ
SGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGKIR
SDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLE
LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ*

RE43738.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-PE 380 CG10388-PE 1..380 1..380 2023 100 Plus
Ubx-PA 389 CG10388-PA 1..389 1..380 2003 97.7 Plus
Ubx-PC 372 CG10388-PC 1..372 1..380 1924 96.1 Plus
Ubx-PD 363 CG10388-PD 1..363 1..380 1908 95.5 Plus
Ubx-PF 355 CG10388-PF 1..355 1..380 1817 91.6 Plus