BDGP Sequence Production Resources |
Search the DGRC for RE43931
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 439 |
Well: | 31 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6055-RA |
Protein status: | RE43931.pep: gold |
Preliminary Size: | 781 |
Sequenced Size: | 1096 |
Gene | Date | Evidence |
---|---|---|
CG6055 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6055 | 2002-06-10 | Blastp of sequenced clone |
CG6055 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6055 | 2008-04-29 | Release 5.5 accounting |
CG6055 | 2008-08-15 | Release 5.9 accounting |
CG6055 | 2008-12-18 | 5.12 accounting |
1096 bp (1096 high quality bases) assembled on 2002-06-10
GenBank Submission: BT001650
> RE43931.complete AGTTGGTATAAGTGAATCGTTGCGTGCGGTTGTTCCCACAACAACATTTT AAGCTTGGATATCTGTGCTGTTCGCTTATCGAGTTTTGAGCCCCGCTTTG TGTCGTTCGTTTCAATCTAAAGCTATCCAAATATGTCTGTGCTGCGTGCA CTGATGTTTCTGGCCTTTGGTGCCACCGTGGCGCTGGCCCAACGTCGCCT GGCTCTGCCCGATCCGAGGAGTTGCGCCAACCGGGTGCGCCATGCCAGCT ATCGGGATGCCAGGGGCGTGTCCCACTCGTACTTCTTCAGCTGGGAGCAT GCTCCTACCCGCAGCCTGGAGGTGGATTGGCTGGATGCGAGGAACATCTG CCGCAGGCACTGCATGGATGCCGTTTCCCTGGAGACGCCACAGGAGAATG ACTTTGTGAAGCAGAGGATTGCCAGGGGCAATGTGCGATACATTTGGACC TCGGGCAGGAAGTGCAACTTCGCTGGCTGCGACAGGCCCGATCTGCAGCC TCCCAATGAGAACGGTTGGTTCTGGTCGGGATCGGGGGCAAAGATTGGAC CCACTTCGCAGAGGAACACCGGCGATTGGTCTTCAACGGGCGGATACCAA CAGCCGCAGCCCGATAACCGGGAGGCCGCGCAGGGCAACGACGAGAGCTG CCTGTCCATCCTGAACAACTTCTACAACGATGGCATCAAGTGGCACGACG TGGCCTGCCATCACATCAAGCCATTTGTGTGCGAGGACTCCGATGAGCTG TTGAACTTCGTCCGCTCCCGGAACCCCAATGTCCGCTTGTAATTCTAACT AGCCTAAGCCTGAGGGAGATGATTAAAATTTACATATTTATGTAGCCTTA AACGGAACATTAATTGGTTGATTGATTGATTGATTGTTTGATTCAAATTC ATTGACTATTCAATCCAACATTGATGACTTCCAAAACGCGTAACATTCGT TTGTTCGGTTAGTTCGCAGCAAAAGTTCTATAAGCAAAATTTGTAATAAC ATTTCTGTGTCGATCCGCGCATCATAAACAAAATTGTTAAATAATTTTAA AAATTGTTAATAAATACAAATTGAACCCATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 7470574..7471540 | 114..1080 | 4730 | 99.3 | Plus |
chr2L | 23010047 | chr2L | 7465611..7465732 | 1..122 | 610 | 100 | Plus |
chr3R | 27901430 | chr3R | 8185752..8185821 | 317..386 | 185 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7471534..7472496 | 121..1083 | 4815 | 100 | Plus |
2L | 23513712 | 2L | 7466550..7466671 | 1..122 | 610 | 100 | Plus |
3R | 31820162 | 3R | 12101206..12101275 | 317..386 | 185 | 84.2 | Plus |
3R | 31820162 | 3R | 12103634..12103744 | 670..780 | 180 | 77.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 7465611..7465732 | 1..122 | 100 | -> | Plus |
chr2L | 7470583..7471540 | 123..1080 | 92 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 1..660 | 133..792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 1..660 | 133..792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 1..660 | 133..792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 1..660 | 133..792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 1..660 | 133..792 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 5..1084 | 1..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 5..1084 | 1..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 8..1087 | 1..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 5..1084 | 1..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6055-RA | 8..1087 | 1..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7466550..7466671 | 1..122 | 100 | -> | Plus |
2L | 7471536..7472493 | 123..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7466550..7466671 | 1..122 | 100 | -> | Plus |
2L | 7471536..7472493 | 123..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7466550..7466671 | 1..122 | 100 | -> | Plus |
2L | 7471536..7472493 | 123..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 7466550..7466671 | 1..122 | 100 | -> | Plus |
arm_2L | 7471536..7472493 | 123..1080 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7471536..7472493 | 123..1080 | 100 | Plus | |
2L | 7466550..7466671 | 1..122 | 100 | -> | Plus |
Translation from 132 to 791
> RE43931.pep MSVLRALMFLAFGATVALAQRRLALPDPRSCANRVRHASYRDARGVSHSY FFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENDFVKQRIARGN VRYIWTSGRKCNFAGCDRPDLQPPNENGWFWSGSGAKIGPTSQRNTGDWS STGGYQQPQPDNREAAQGNDESCLSILNNFYNDGIKWHDVACHHIKPFVC EDSDELLNFVRSRNPNVRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15862-PA | 219 | GF15862-PA | 1..219 | 1..219 | 1059 | 95 | Plus |
Dana\GF17242-PA | 220 | GF17242-PA | 11..220 | 6..219 | 646 | 55.3 | Plus |
Dana\GF14419-PA | 231 | GF14419-PA | 32..231 | 21..219 | 502 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10482-PA | 219 | GG10482-PA | 1..219 | 1..219 | 1168 | 98.6 | Plus |
Dere\GG18750-PA | 220 | GG18750-PA | 11..220 | 6..219 | 650 | 56.3 | Plus |
Dere\GG24353-PA | 231 | GG24353-PA | 32..231 | 21..219 | 498 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11170-PA | 219 | GH11170-PA | 1..219 | 1..219 | 1130 | 95 | Plus |
Dgri\GH22097-PA | 220 | GH22097-PA | 14..220 | 9..219 | 641 | 55.7 | Plus |
Dgri\GH10241-PA | 190 | GH10241-PA | 1..188 | 1..174 | 319 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6055-PB | 219 | CG6055-PB | 1..219 | 1..219 | 1209 | 100 | Plus |
CG6055-PA | 219 | CG6055-PA | 1..219 | 1..219 | 1209 | 100 | Plus |
CG4115-PA | 220 | CG4115-PA | 26..220 | 22..219 | 666 | 59.3 | Plus |
Clect27-PB | 231 | CG3244-PB | 32..231 | 21..219 | 509 | 48.5 | Plus |
Clect27-PA | 231 | CG3244-PA | 32..231 | 21..219 | 509 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23788-PA | 219 | GI23788-PA | 1..219 | 1..219 | 1138 | 95.9 | Plus |
Dmoj\GI22702-PA | 220 | GI22702-PA | 26..220 | 22..219 | 642 | 58.3 | Plus |
Dmoj\GI15343-PA | 233 | GI15343-PA | 1..233 | 1..219 | 506 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25820-PA | 219 | GL25820-PA | 1..219 | 1..219 | 1066 | 95.4 | Plus |
Dper\GL22277-PA | 220 | GL22277-PA | 12..220 | 7..219 | 639 | 55.1 | Plus |
Dper\GL15967-PA | 232 | GL15967-PA | 33..232 | 21..219 | 497 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19326-PA | 219 | GA19326-PA | 1..219 | 1..219 | 1066 | 95.4 | Plus |
Dpse\GA17968-PA | 220 | GA17968-PA | 12..220 | 7..219 | 639 | 55.1 | Plus |
Dpse\GA16905-PA | 246 | GA16905-PA | 47..246 | 21..219 | 501 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16469-PA | 219 | GM16469-PA | 1..219 | 1..219 | 1174 | 99.5 | Plus |
Dsec\GM24013-PA | 220 | GM24013-PA | 11..220 | 6..219 | 652 | 56.3 | Plus |
Dsec\GM18074-PA | 231 | GM18074-PA | 32..231 | 21..219 | 498 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23474-PA | 219 | GD23474-PA | 1..219 | 1..219 | 1170 | 99.1 | Plus |
Dsim\GD18814-PA | 220 | GD18814-PA | 11..220 | 6..219 | 652 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21003-PA | 219 | GJ21003-PA | 1..219 | 1..219 | 1131 | 95.4 | Plus |
Dvir\GJ23431-PA | 220 | GJ23431-PA | 26..220 | 22..219 | 639 | 57.8 | Plus |
Dvir\GJ17272-PA | 233 | GJ17272-PA | 1..233 | 1..219 | 499 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24308-PA | 219 | GK24308-PA | 1..219 | 1..219 | 1129 | 95.4 | Plus |
Dwil\GK11972-PA | 220 | GK11972-PA | 11..220 | 8..219 | 643 | 56.1 | Plus |
Dwil\GK23915-PA | 233 | GK23915-PA | 34..233 | 21..219 | 504 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14572-PA | 219 | GE14572-PA | 1..219 | 1..219 | 1168 | 98.6 | Plus |
Dyak\GE26172-PA | 220 | GE26172-PA | 11..220 | 6..219 | 653 | 56.3 | Plus |
Dyak\GE14680-PA | 231 | GE14680-PA | 32..231 | 21..219 | 498 | 48.5 | Plus |
Translation from 132 to 791
> RE43931.hyp MSVLRALMFLAFGATVALAQRRLALPDPRSCANRVRHASYRDARGVSHSY FFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENDFVKQRIARGN VRYIWTSGRKCNFAGCDRPDLQPPNENGWFWSGSGAKIGPTSQRNTGDWS STGGYQQPQPDNREAAQGNDESCLSILNNFYNDGIKWHDVACHHIKPFVC EDSDELLNFVRSRNPNVRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6055-PB | 219 | CG6055-PB | 1..219 | 1..219 | 1209 | 100 | Plus |
CG6055-PA | 219 | CG6055-PA | 1..219 | 1..219 | 1209 | 100 | Plus |
CG4115-PA | 220 | CG4115-PA | 26..220 | 22..219 | 666 | 59.3 | Plus |
Clect27-PB | 231 | CG3244-PB | 32..231 | 21..219 | 509 | 48.5 | Plus |
Clect27-PA | 231 | CG3244-PA | 32..231 | 21..219 | 509 | 48.5 | Plus |