BDGP Sequence Production Resources |
Search the DGRC for RE44027
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 440 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Nnf1b-RA |
Protein status: | RE44027.pep: gold |
Sequenced Size: | 789 |
Gene | Date | Evidence |
---|---|---|
CG31658 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31658 | 2004-08-13 | Blastp of sequenced clone |
Nnf1b | 2008-04-29 | Release 5.5 accounting |
Nnf1b | 2008-08-15 | Release 5.9 accounting |
Nnf1b | 2008-12-18 | 5.12 accounting |
789 bp (789 high quality bases) assembled on 2004-08-13
GenBank Submission: BT015998
> RE44027.complete ATGGTTTCGGTCGCCAAGTTTTGCTTGTAATTATTATTTTGCCAGAATTG TGTTAAAAGTATGAATAATATTGAAGAGGACACCGAAGCAGCCTTCAAAC GGCTCCAGGCTGTCATTCCACAGGTGAAGCAGGCCTACGAGGAAGCCATT GGACAGATCTTCTCGGATTTAAACTCCTCAGATCTTGAGTCGTGTGCCTC CATCCTCGAGGAGCACGAATCCACGAGCCTGGACACCGAGCAAATAATCC ACAGCACCCGTCGGCTTATGACCAAGATCGTCCTGGATGTGAACCAGTGC TTCTTCTCCGGCAACGACGTGGAGACCAAGCTGACCACGCTGGAAATGCT TAAGGAGCAGTTTGCCGCCCACGAGGGCAAGAACTGGAACTTCAACTGTC TGTCCCCTGAGGAACTTACTCGCCCTCTGCGCATGCACAACTTGAATCTA AGCATCACATTCATGGAGCAACAGCTTAAGAAACAGGAAAAGGAACTCGA GATTGCTATGGCCAAAAGCATTAAAAATCGACAGCTTATACATGATGTCC ACGCTGAACGGGTGAAAGTGGGATGTATGATGAAGCAGCAGTTGGCCGAG TACCAGGCCATTAAGCCACAGTTAATGGAAATGGAACGGCTAATAAATGA TTCGTATGTGCAGGAAGAAATGTAATTTTATAAAAAAAAACAGATTATTA TTATTATTATTATTATTATTATTATTATTATATTAGTTGCTGGGTCTTGA AATAAATATGAATTTCAAACTTAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 811132..811406 | 500..773 | 1325 | 99.6 | Plus |
chr2L | 23010047 | chr2L | 810684..810897 | 174..387 | 1055 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 810461..810633 | 1..173 | 820 | 98.3 | Plus |
chr2L | 23010047 | chr2L | 810963..811078 | 386..501 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 811257..811530 | 500..773 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 810809..811022 | 174..387 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 810586..810758 | 1..173 | 850 | 99.4 | Plus |
2L | 23513712 | 2L | 811088..811203 | 386..501 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 811257..811530 | 500..773 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 810809..811022 | 174..387 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 810586..810758 | 1..173 | 850 | 99.4 | Plus |
2L | 23513712 | 2L | 811088..811203 | 386..501 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 985..1085 | 771..673 | 122 | 59.4 | Minus |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3235..3311 | 68..147 | 113 | 65.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 810461..810633 | 1..173 | 98 | -> | Plus |
chr2L | 810684..810896 | 174..386 | 99 | -> | Plus |
chr2L | 810964..811078 | 387..501 | 100 | -> | Plus |
chr2L | 811134..811406 | 502..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..615 | 61..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..615 | 61..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..615 | 61..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..615 | 61..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..615 | 61..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..615 | 61..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..773 | 1..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 10..782 | 1..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 1..615 | 61..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1b-RA | 10..782 | 1..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 810586..810758 | 1..173 | 99 | -> | Plus |
2L | 810809..811021 | 174..386 | 100 | -> | Plus |
2L | 811089..811203 | 387..501 | 100 | -> | Plus |
2L | 811259..811530 | 502..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 810586..810758 | 1..173 | 99 | -> | Plus |
2L | 810809..811021 | 174..386 | 100 | -> | Plus |
2L | 811089..811203 | 387..501 | 100 | -> | Plus |
2L | 811259..811530 | 502..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 810586..810758 | 1..173 | 99 | -> | Plus |
2L | 810809..811021 | 174..386 | 100 | -> | Plus |
2L | 811089..811203 | 387..501 | 100 | -> | Plus |
2L | 811259..811530 | 502..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 810586..810758 | 1..173 | 99 | -> | Plus |
arm_2L | 810809..811021 | 174..386 | 100 | -> | Plus |
arm_2L | 811089..811203 | 387..501 | 100 | -> | Plus |
arm_2L | 811259..811530 | 502..774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 810809..811021 | 174..386 | 100 | -> | Plus |
2L | 811089..811203 | 387..501 | 100 | -> | Plus |
2L | 811259..811530 | 502..774 | 99 | Plus | |
2L | 810586..810758 | 1..173 | 99 | -> | Plus |
Translation from 60 to 674
> RE44027.pep MNNIEEDTEAAFKRLQAVIPQVKQAYEEAIGQIFSDLNSSDLESCASILE EHESTSLDTEQIIHSTRRLMTKIVLDVNQCFFSGNDVETKLTTLEMLKEQ FAAHEGKNWNFNCLSPEELTRPLRMHNLNLSITFMEQQLKKQEKELEIAM AKSIKNRQLIHDVHAERVKVGCMMKQQLAEYQAIKPQLMEMERLINDSYV QEEM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12757-PA | 208 | GF12757-PA | 12..202 | 8..198 | 433 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24745-PA | 204 | GG24745-PA | 1..203 | 1..203 | 912 | 83.3 | Plus |
Dere\GG20848-PA | 189 | GG20848-PA | 2..185 | 6..189 | 588 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22114-PA | 203 | GH22114-PA | 11..196 | 5..195 | 368 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nnf1b-PA | 204 | CG31658-PA | 1..204 | 1..204 | 1035 | 100 | Plus |
Nnf1a-PA | 194 | CG13434-PA | 2..193 | 6..197 | 574 | 57.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19249-PA | 164 | GI19249-PA | 6..155 | 42..191 | 349 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17439-PA | 217 | GL17439-PA | 11..210 | 6..200 | 498 | 47.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24826-PA | 217 | GA24826-PA | 11..210 | 6..200 | 495 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16767-PA | 200 | GM16767-PA | 1..200 | 1..200 | 1020 | 96 | Plus |
Dsec\GM19776-PA | 194 | GM19776-PA | 2..193 | 6..197 | 594 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23046-PA | 200 | GD23046-PA | 1..200 | 1..200 | 1023 | 96 | Plus |
Dsim\GD25267-PA | 194 | GD25267-PA | 2..193 | 6..197 | 597 | 56.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20326-PA | 206 | GJ20326-PA | 11..204 | 5..198 | 417 | 42.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21831-PA | 199 | GK21831-PA | 7..192 | 7..192 | 447 | 46.2 | Plus |
Translation from 60 to 674
> RE44027.hyp MNNIEEDTEAAFKRLQAVIPQVKQAYEEAIGQIFSDLNSSDLESCASILE EHESTSLDTEQIIHSTRRLMTKIVLDVNQCFFSGNDVETKLTTLEMLKEQ FAAHEGKNWNFNCLSPEELTRPLRMHNLNLSITFMEQQLKKQEKELEIAM AKSIKNRQLIHDVHAERVKVGCMMKQQLAEYQAIKPQLMEMERLINDSYV QEEM*