Clone RE44079 Report

Search the DGRC for RE44079

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:440
Well:79
Vector:pFlc-1
Associated Gene/TranscriptPrp3-RB
Protein status:RE44079.pep: gold
Preliminary Size:1906
Sequenced Size:2075

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7757 2002-01-01 Sim4 clustering to Release 2
CG7757 2002-06-07 Blastp of sequenced clone
CG7757 2003-01-01 Sim4 clustering to Release 3
CG7757 2008-04-29 Release 5.5 accounting
CG7757 2008-08-15 Release 5.9 accounting
CG7757 2008-12-18 5.12 accounting

Clone Sequence Records

RE44079.complete Sequence

2075 bp (2075 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119640

> RE44079.complete
GAATTTTTCACCAAAGACCAAAAACCTTGTGTATTGTTTTTGAATTGCAA
ATCGCTGATTTAAGCTCAAGGAATGTGCCAAGCAGTTGGATGGCGACGAC
CAGAAATTGTCCAAAAAGCGCGCTGCCGCCTCAGATTCCAAAAGTGGTGG
TGGAAGCGCCCTTGAAGCGCCCAAGAAATCCCGCTTCGATGTCCCGGAAA
AGAATGGCGGCGGTGGTGAGAAGAAAGAAGAGGTCGCCGTGCCCGCCTCG
CTGAGTTCCACGCAGATCAAGCTGATGATGGCCCATGCCCAGCGGGAGAT
CGAGGAACGCAAGCGGGCCCTGAGTAATCTAAGAGACAAGGATCCGCTGC
TGGCGTCAGTTCCATCGATCGGAATGCCAGTTGCCTTAGCCACTCAAGCG
CTGGCGAAGAAGCCCACGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGC
CGAGTTGCAGGCACAGATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTT
TGATTCAGCCCACTGCGGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCG
CAGGAGCGACCCAAACCCCTGATTCTGGACGATGAAGGACGCACTGTGGA
CAAGAGCGGACGTACCATTAATATTCCCACGGTGACACCTACATTGAAAG
CCAACATACGCGCCAAGAAACGGGAGGTGTTCCAACGCCAAACGGGTTTG
GGTGAACGGAGTGAATCGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTA
CTTTGACGACCGCATAGCCCTGAAGCCCACTGTTAGAACCAAGAGGACGT
TGAGATTCCACGAGCCCGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGC
ATGAAAAGCCAGCTGGAGCGACTACAGAATGAGATTTCGCAAATAGCCCG
GAAAACGGGCATCTCGTCGGCCACCAAACTGGCATTGATTGCCCCCAAGC
AGGACATGCCGGACGATGTGCCTGCCATGGAGTGGTGGGACTCAGTTATA
CTGACCCAGGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCAT
ACGCCAAACAGCCATAACCAACCTTATAGAGCATCCCACACAAATGAAGC
CGCCAAATGAGCCCTTGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAG
AAAGAGCGCAAAAAGCTTCGTCGCCAGAACCGTCGCGAGGCCTGGAAGGA
GGAGCAGGAGAAGATCCGACTGGGTTTGGTGGCCCCACCAGAGCCGAAAC
TGCGCATATCCAACCTGATGCGTGTGCTTGGCTCGGAGGCCGTACAAGAT
CCGACCAAAATGGAGCAGCATGTGCGCGACCAGATGGCCAAGCGGCAGAA
GGCGCACGAAGATGCCAACAATGCGCGCAAGCTGACCAGCGAGCAGAAGA
GCGAAAAGAAGCAGCGCAAGCTGAGGGAAGACACCAGCTGCGGTGTACAT
GTCAGCGTCTATCGCATACGAGATCTGCAGGACAACCAGAGCAAGAAATT
CAAGGTGGAGACCAATGCCAAGCAGCTGCAGATGACCGGCAGCGTGGTGT
TGTTCCGGGATTGCTGTGTGGTTGTCGTGGAGGGTGGGCCCAAGCAGCAG
AAAAAGTATCGCAGGCTCATGCTAACGCGCATTAAGTGGGAGGAGGACAA
CGCCAAGGGCAATGACGGCCAGGACGTGCCGAACTCATGCGTACTCGTCT
GGGAGGGGACTAGTCAGCGACGGCACTTTGGCGAGATCAAGTTTAAGATC
TTTCCAATGGAAAAAATGGCCCGTGAGTTTTTTCAGAAGCACCAGGTCGA
ACACTACTGGGATCTGGCCTACTCCGGAGCCGTGCTTGAGGCCTCCACGG
ATCAGCAGTAGATAAAAGGCATTTTAAGAATTGCTAGATACACTACAGTT
CTACAAATTCACTTTCGGAAAGATACAAGTCTGAATTAAAGTTTTGAAGC
GCGCTACGCATTTGATGTTATTATTTTCGAAGCTATTCGGAACTTTGGAA
GTGCAAAAATAACGAATAAAAGTTTTATCTGGACTCTAAAAAAAAAAAAA
AAAAAAAAGAAAAAAAAAAAAAAAA

RE44079.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7757-RB 2079 CG7757-RB 43..2079 1..2037 10185 100 Plus
CG7757.a 2075 CG7757.a 43..2075 1..2037 10100 99.8 Plus
CG7757-RA 2188 CG7757-RA 239..2188 88..2037 9750 100 Plus
CG7757-RA 2188 CG7757-RA 83..171 1..89 445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19899828..19900846 88..1106 5035 99.6 Plus
chr3L 24539361 chr3L 19900901..19901834 1107..2040 4640 99.8 Plus
chr3L 24539361 chr3L 19899672..19899760 1..89 445 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19910501..19911519 88..1106 5095 100 Plus
3L 28110227 3L 19911574..19912507 1107..2040 4670 100 Plus
3L 28110227 3L 19910345..19910433 1..89 445 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19903601..19904619 88..1106 5095 100 Plus
3L 28103327 3L 19904674..19905607 1107..2040 4670 100 Plus
3L 28103327 3L 19903445..19903533 1..89 445 100 Plus
Blast to na_te.dros performed 2019-03-16 06:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1357..1412 2002..2057 118 67.9 Plus

RE44079.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:01:06 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19899672..19899759 1..88 100 -> Plus
chr3L 19899829..19900846 89..1106 99 -> Plus
chr3L 19900901..19901831 1107..2037 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:17:28 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RA 20..1797 82..1861 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:29:41 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RA 20..1797 82..1861 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:30:28 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 20..1797 82..1861 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:05 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RA 20..1797 82..1861 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:10:40 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 20..1797 82..1861 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:59:19 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RB 1..2037 1..2037 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:29:40 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RB 1..2037 1..2037 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:28 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
Prp3-RB 46..2082 1..2037 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:05 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RB 1..2037 1..2037 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:10:40 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
Prp3-RB 46..2082 1..2037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:06 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19910345..19910432 1..88 100 -> Plus
3L 19910502..19911519 89..1106 100 -> Plus
3L 19911574..19912504 1107..2037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:06 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19910345..19910432 1..88 100 -> Plus
3L 19910502..19911519 89..1106 100 -> Plus
3L 19911574..19912504 1107..2037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:06 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19910345..19910432 1..88 100 -> Plus
3L 19910502..19911519 89..1106 100 -> Plus
3L 19911574..19912504 1107..2037 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:28 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19903445..19903532 1..88 100 -> Plus
arm_3L 19903602..19904619 89..1106 100 -> Plus
arm_3L 19904674..19905604 1107..2037 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:35 Download gff for RE44079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19903602..19904619 89..1106 100 -> Plus
3L 19904674..19905604 1107..2037 100   Plus
3L 19903445..19903532 1..88 100 -> Plus

RE44079.hyp Sequence

Translation from 274 to 1860

> RE44079.hyp
MMAHAQREIEERKRALSNLRDKDPLLASVPSIGMPVALATQALAKKPTPE
DSEKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI
LDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGT
SAQEEAIKYFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERL
QNEISQIARKTGISSATKLALIAPKQDMPDDVPAMEWWDSVILTQDLETV
DDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR
QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHV
RDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRD
LQDNQSKKFKVETNAKQLQMTGSVVLFRDCCVVVVEGGPKQQKKYRRLML
TRIKWEEDNAKGNDGQDVPNSCVLVWEGTSQRRHFGEIKFKIFPMEKMAR
EFFQKHQVEHYWDLAYSGAVLEASTDQQ*

RE44079.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Prp3-PB 528 CG7757-PB 1..528 1..528 2686 100 Plus
Prp3-PA 598 CG7757-PA 71..598 1..528 2686 100 Plus

RE44079.pep Sequence

Translation from 274 to 1860

> RE44079.pep
MMAHAQREIEERKRALSNLRDKDPLLASVPSIGMPVALATQALAKKPTPE
DSEKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI
LDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGT
SAQEEAIKYFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERL
QNEISQIARKTGISSATKLALIAPKQDMPDDVPAMEWWDSVILTQDLETV
DDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR
QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHV
RDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRD
LQDNQSKKFKVETNAKQLQMTGSVVLFRDCCVVVVEGGPKQQKKYRRLML
TRIKWEEDNAKGNDGQDVPNSCVLVWEGTSQRRHFGEIKFKIFPMEKMAR
EFFQKHQVEHYWDLAYSGAVLEASTDQQ*

RE44079.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23600-PA 590 GF23600-PA 63..590 1..528 2637 95.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16066-PA 597 GG16066-PA 73..597 1..528 2748 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14665-PA 629 GH14665-PA 90..629 1..528 2461 88.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Prp3-PB 528 CG7757-PB 1..528 1..528 2686 100 Plus
Prp3-PA 598 CG7757-PA 71..598 1..528 2686 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11649-PA 608 GI11649-PA 75..608 1..528 2528 91 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22666-PA 602 GL22666-PA 73..602 1..528 2597 93.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20565-PA 602 GA20565-PA 73..602 1..528 2601 94 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19682-PA 598 GM19682-PA 71..598 1..528 2782 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14836-PA 598 GD14836-PA 71..598 1..528 2801 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11330-PA 603 GJ11330-PA 70..603 1..528 2524 91 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16699-PA 609 GK16699-PA 86..608 1..528 2555 90.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19633-PA 600 GE19633-PA 73..600 1..528 2778 98.5 Plus
Dyak\GE23009-PA 109 GE23009-PA 1..109 420..528 609 99.1 Plus