BDGP Sequence Production Resources |
Search the DGRC for RE44079
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 440 |
Well: | 79 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Prp3-RB |
Protein status: | RE44079.pep: gold |
Preliminary Size: | 1906 |
Sequenced Size: | 2075 |
Gene | Date | Evidence |
---|---|---|
CG7757 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7757 | 2002-06-07 | Blastp of sequenced clone |
CG7757 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7757 | 2008-04-29 | Release 5.5 accounting |
CG7757 | 2008-08-15 | Release 5.9 accounting |
CG7757 | 2008-12-18 | 5.12 accounting |
2075 bp (2075 high quality bases) assembled on 2002-06-07
GenBank Submission: AY119640
> RE44079.complete GAATTTTTCACCAAAGACCAAAAACCTTGTGTATTGTTTTTGAATTGCAA ATCGCTGATTTAAGCTCAAGGAATGTGCCAAGCAGTTGGATGGCGACGAC CAGAAATTGTCCAAAAAGCGCGCTGCCGCCTCAGATTCCAAAAGTGGTGG TGGAAGCGCCCTTGAAGCGCCCAAGAAATCCCGCTTCGATGTCCCGGAAA AGAATGGCGGCGGTGGTGAGAAGAAAGAAGAGGTCGCCGTGCCCGCCTCG CTGAGTTCCACGCAGATCAAGCTGATGATGGCCCATGCCCAGCGGGAGAT CGAGGAACGCAAGCGGGCCCTGAGTAATCTAAGAGACAAGGATCCGCTGC TGGCGTCAGTTCCATCGATCGGAATGCCAGTTGCCTTAGCCACTCAAGCG CTGGCGAAGAAGCCCACGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGC CGAGTTGCAGGCACAGATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTT TGATTCAGCCCACTGCGGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCG CAGGAGCGACCCAAACCCCTGATTCTGGACGATGAAGGACGCACTGTGGA CAAGAGCGGACGTACCATTAATATTCCCACGGTGACACCTACATTGAAAG CCAACATACGCGCCAAGAAACGGGAGGTGTTCCAACGCCAAACGGGTTTG GGTGAACGGAGTGAATCGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTA CTTTGACGACCGCATAGCCCTGAAGCCCACTGTTAGAACCAAGAGGACGT TGAGATTCCACGAGCCCGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGC ATGAAAAGCCAGCTGGAGCGACTACAGAATGAGATTTCGCAAATAGCCCG GAAAACGGGCATCTCGTCGGCCACCAAACTGGCATTGATTGCCCCCAAGC AGGACATGCCGGACGATGTGCCTGCCATGGAGTGGTGGGACTCAGTTATA CTGACCCAGGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCAT ACGCCAAACAGCCATAACCAACCTTATAGAGCATCCCACACAAATGAAGC CGCCAAATGAGCCCTTGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAG AAAGAGCGCAAAAAGCTTCGTCGCCAGAACCGTCGCGAGGCCTGGAAGGA GGAGCAGGAGAAGATCCGACTGGGTTTGGTGGCCCCACCAGAGCCGAAAC TGCGCATATCCAACCTGATGCGTGTGCTTGGCTCGGAGGCCGTACAAGAT CCGACCAAAATGGAGCAGCATGTGCGCGACCAGATGGCCAAGCGGCAGAA GGCGCACGAAGATGCCAACAATGCGCGCAAGCTGACCAGCGAGCAGAAGA GCGAAAAGAAGCAGCGCAAGCTGAGGGAAGACACCAGCTGCGGTGTACAT GTCAGCGTCTATCGCATACGAGATCTGCAGGACAACCAGAGCAAGAAATT CAAGGTGGAGACCAATGCCAAGCAGCTGCAGATGACCGGCAGCGTGGTGT TGTTCCGGGATTGCTGTGTGGTTGTCGTGGAGGGTGGGCCCAAGCAGCAG AAAAAGTATCGCAGGCTCATGCTAACGCGCATTAAGTGGGAGGAGGACAA CGCCAAGGGCAATGACGGCCAGGACGTGCCGAACTCATGCGTACTCGTCT GGGAGGGGACTAGTCAGCGACGGCACTTTGGCGAGATCAAGTTTAAGATC TTTCCAATGGAAAAAATGGCCCGTGAGTTTTTTCAGAAGCACCAGGTCGA ACACTACTGGGATCTGGCCTACTCCGGAGCCGTGCTTGAGGCCTCCACGG ATCAGCAGTAGATAAAAGGCATTTTAAGAATTGCTAGATACACTACAGTT CTACAAATTCACTTTCGGAAAGATACAAGTCTGAATTAAAGTTTTGAAGC GCGCTACGCATTTGATGTTATTATTTTCGAAGCTATTCGGAACTTTGGAA GTGCAAAAATAACGAATAAAAGTTTTATCTGGACTCTAAAAAAAAAAAAA AAAAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7757-RB | 2079 | CG7757-RB | 43..2079 | 1..2037 | 10185 | 100 | Plus |
CG7757.a | 2075 | CG7757.a | 43..2075 | 1..2037 | 10100 | 99.8 | Plus |
CG7757-RA | 2188 | CG7757-RA | 239..2188 | 88..2037 | 9750 | 100 | Plus |
CG7757-RA | 2188 | CG7757-RA | 83..171 | 1..89 | 445 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19899828..19900846 | 88..1106 | 5035 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 19900901..19901834 | 1107..2040 | 4640 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 19899672..19899760 | 1..89 | 445 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19910501..19911519 | 88..1106 | 5095 | 100 | Plus |
3L | 28110227 | 3L | 19911574..19912507 | 1107..2040 | 4670 | 100 | Plus |
3L | 28110227 | 3L | 19910345..19910433 | 1..89 | 445 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19903601..19904619 | 88..1106 | 5095 | 100 | Plus |
3L | 28103327 | 3L | 19904674..19905607 | 1107..2040 | 4670 | 100 | Plus |
3L | 28103327 | 3L | 19903445..19903533 | 1..89 | 445 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1357..1412 | 2002..2057 | 118 | 67.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19899672..19899759 | 1..88 | 100 | -> | Plus |
chr3L | 19899829..19900846 | 89..1106 | 99 | -> | Plus |
chr3L | 19900901..19901831 | 1107..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7757-RA | 20..1797 | 82..1861 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7757-RA | 20..1797 | 82..1861 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp3-RA | 20..1797 | 82..1861 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7757-RA | 20..1797 | 82..1861 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp3-RA | 20..1797 | 82..1861 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7757-RB | 1..2037 | 1..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7757-RB | 1..2037 | 1..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp3-RB | 46..2082 | 1..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7757-RB | 1..2037 | 1..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp3-RB | 46..2082 | 1..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19910345..19910432 | 1..88 | 100 | -> | Plus |
3L | 19910502..19911519 | 89..1106 | 100 | -> | Plus |
3L | 19911574..19912504 | 1107..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19910345..19910432 | 1..88 | 100 | -> | Plus |
3L | 19910502..19911519 | 89..1106 | 100 | -> | Plus |
3L | 19911574..19912504 | 1107..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19910345..19910432 | 1..88 | 100 | -> | Plus |
3L | 19910502..19911519 | 89..1106 | 100 | -> | Plus |
3L | 19911574..19912504 | 1107..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19903445..19903532 | 1..88 | 100 | -> | Plus |
arm_3L | 19903602..19904619 | 89..1106 | 100 | -> | Plus |
arm_3L | 19904674..19905604 | 1107..2037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19903602..19904619 | 89..1106 | 100 | -> | Plus |
3L | 19904674..19905604 | 1107..2037 | 100 | Plus | |
3L | 19903445..19903532 | 1..88 | 100 | -> | Plus |
Translation from 274 to 1860
> RE44079.hyp MMAHAQREIEERKRALSNLRDKDPLLASVPSIGMPVALATQALAKKPTPE DSEKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI LDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGT SAQEEAIKYFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERL QNEISQIARKTGISSATKLALIAPKQDMPDDVPAMEWWDSVILTQDLETV DDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHV RDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRD LQDNQSKKFKVETNAKQLQMTGSVVLFRDCCVVVVEGGPKQQKKYRRLML TRIKWEEDNAKGNDGQDVPNSCVLVWEGTSQRRHFGEIKFKIFPMEKMAR EFFQKHQVEHYWDLAYSGAVLEASTDQQ*
Translation from 274 to 1860
> RE44079.pep MMAHAQREIEERKRALSNLRDKDPLLASVPSIGMPVALATQALAKKPTPE DSEKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI LDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGT SAQEEAIKYFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERL QNEISQIARKTGISSATKLALIAPKQDMPDDVPAMEWWDSVILTQDLETV DDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHV RDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRD LQDNQSKKFKVETNAKQLQMTGSVVLFRDCCVVVVEGGPKQQKKYRRLML TRIKWEEDNAKGNDGQDVPNSCVLVWEGTSQRRHFGEIKFKIFPMEKMAR EFFQKHQVEHYWDLAYSGAVLEASTDQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23600-PA | 590 | GF23600-PA | 63..590 | 1..528 | 2637 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16066-PA | 597 | GG16066-PA | 73..597 | 1..528 | 2748 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14665-PA | 629 | GH14665-PA | 90..629 | 1..528 | 2461 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prp3-PB | 528 | CG7757-PB | 1..528 | 1..528 | 2686 | 100 | Plus |
Prp3-PA | 598 | CG7757-PA | 71..598 | 1..528 | 2686 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11649-PA | 608 | GI11649-PA | 75..608 | 1..528 | 2528 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22666-PA | 602 | GL22666-PA | 73..602 | 1..528 | 2597 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20565-PA | 602 | GA20565-PA | 73..602 | 1..528 | 2601 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19682-PA | 598 | GM19682-PA | 71..598 | 1..528 | 2782 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14836-PA | 598 | GD14836-PA | 71..598 | 1..528 | 2801 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11330-PA | 603 | GJ11330-PA | 70..603 | 1..528 | 2524 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16699-PA | 609 | GK16699-PA | 86..608 | 1..528 | 2555 | 90.4 | Plus |