BDGP Sequence Production Resources |
Search the DGRC for RE44119
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 441 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpS17-RB |
Protein status: | RE44119.pep: gold |
Sequenced Size: | 543 |
Gene | Date | Evidence |
---|---|---|
CG3922 | 2002-10-30 | Blastp of sequenced clone |
RpS17 | 2008-04-29 | Release 5.5 accounting |
RpS17 | 2008-08-15 | Release 5.9 accounting |
RpS17 | 2008-12-18 | 5.12 accounting |
543 bp (543 high quality bases) assembled on 2002-10-30
GenBank Submission: BT001651
> RE44119.complete CTTTTTCTTTCGTTTCCGGCGAGCGGTGATTAAAATATCCATCGAGCAAC ATAATGGGTCGCGTACGAACCAAGACGGTGAAGAAGGCCGCTAAGGTCAT CATCGAGAAGTACTACACTCGCCTGACGTTGGACTTCCACACCAACAAGC GCATCTGCGAGGAGGTGGCCATCATTCCCACCAAGCCCCTGCGCAACAAG ATTGCCGGCTATGTCACCCATTTGATGGGCCGCCTGCGTCACTCCCAGGT GCGTGGTATCTCCATCAAGTTGCAGGAGGAGGAGCGTGAGCGTCGTGACA ACTACGTCCCGGCCGTCTCCGCTCTGGAGCAGGACATCATCGAGGTCGAC GCCGACACCAAGGAGATGTTGAAGCTTCTGGACTTCCACAACATCCGTGG CCTGCAGCTCACCCAGCCCAACACCAACAACTTTGGTCGTCGCAACTAAG ATTTGTATAGCGCGTAGATGATGATGTTCTGATTTGCATGGGATCACAAT AAATTTGTGTGAAGTGCATTTAAAGTGTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS17-RB | 810 | RpS17-RB | 41..569 | 1..529 | 2645 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9420709..9421029 | 528..208 | 1575 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 9421088..9421240 | 208..56 | 750 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 9421597..9421632 | 57..22 | 180 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4758..4830 | 289..363 | 109 | 62.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9420709..9421028 | 209..528 | 99 | <- | Minus |
chr3L | 9421088..9421239 | 57..208 | 99 | <- | Minus |
chr3L | 9421598..9421630 | 24..56 | 100 | <- | Minus |
chr3L | 9421695..9421717 | 1..23 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 1..396 | 54..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 1..396 | 54..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 1..396 | 54..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 1..396 | 54..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 1..396 | 54..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 4..531 | 1..528 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 4..531 | 1..528 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 8..535 | 1..528 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 4..531 | 1..528 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS17-RB | 8..535 | 1..528 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9428795..9429114 | 209..528 | 100 | <- | Minus |
3L | 9429174..9429325 | 57..208 | 100 | <- | Minus |
3L | 9429695..9429727 | 24..56 | 100 | <- | Minus |
3L | 9429792..9429814 | 1..23 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9428795..9429114 | 209..528 | 100 | <- | Minus |
3L | 9429174..9429325 | 57..208 | 100 | <- | Minus |
3L | 9429695..9429727 | 24..56 | 100 | <- | Minus |
3L | 9429792..9429814 | 1..23 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9428795..9429114 | 209..528 | 100 | <- | Minus |
3L | 9429174..9429325 | 57..208 | 100 | <- | Minus |
3L | 9429695..9429727 | 24..56 | 100 | <- | Minus |
3L | 9429792..9429814 | 1..23 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9421895..9422214 | 209..528 | 100 | <- | Minus |
arm_3L | 9422274..9422425 | 57..208 | 100 | <- | Minus |
arm_3L | 9422795..9422827 | 24..56 | 100 | <- | Minus |
arm_3L | 9422892..9422914 | 1..23 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9421895..9422214 | 209..528 | 100 | <- | Minus |
3L | 9422274..9422425 | 57..208 | 100 | <- | Minus |
3L | 9422795..9422827 | 24..56 | 100 | <- | Minus |
3L | 9422892..9422914 | 1..23 | 100 | Minus |
Translation from 53 to 448
> RE44119.hyp MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI AGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDA DTKEMLKLLDFHNIRGLQLTQPNTNNFGRRN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS17-PB | 131 | CG3922-PB | 1..131 | 1..131 | 668 | 100 | Plus |
Translation from 53 to 448
> RE44119.pep MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI AGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDA DTKEMLKLLDFHNIRGLQLTQPNTNNFGRRN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25156-PA | 131 | GF25156-PA | 1..131 | 1..131 | 684 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14040-PA | 131 | GG14040-PA | 1..131 | 1..131 | 689 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16319-PA | 132 | GH16319-PA | 3..132 | 2..131 | 684 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS17-PB | 131 | CG3922-PB | 1..131 | 1..131 | 668 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13264-PA | 131 | GI13264-PA | 1..131 | 1..131 | 689 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22448-PA | 131 | GL22448-PA | 1..131 | 1..131 | 680 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17776-PA | 131 | GA17776-PA | 1..131 | 1..131 | 680 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24873-PA | 131 | GM24873-PA | 1..131 | 1..131 | 689 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12925-PA | 131 | GD12925-PA | 1..131 | 1..131 | 689 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12034-PA | 133 | GJ12034-PA | 4..133 | 2..131 | 672 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16630-PA | 135 | GK16630-PA | 6..135 | 2..131 | 677 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\RpS17-PA | 131 | GE21243-PA | 1..131 | 1..131 | 685 | 99.2 | Plus |