Clone RE44178 Report

Search the DGRC for RE44178

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:441
Well:78
Vector:pFlc-1
Associated Gene/Transcriptfz3-RA
Protein status:RE44178.pep: gold
Preliminary Size:2301
Sequenced Size:2262

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16785 2002-01-01 Sim4 clustering to Release 2
CG16785 2002-06-07 Blastp of sequenced clone
CG16785 2003-01-01 Sim4 clustering to Release 3
fz3 2008-04-29 Release 5.5 accounting
fz3 2008-08-15 Release 5.9 accounting
fz3 2008-12-18 5.12 accounting

Clone Sequence Records

RE44178.complete Sequence

2262 bp (2262 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119641

> RE44178.complete
AGTTTGTTGGAAACAGTGAAGAGTAGTGGTCGCGTTTCGCAGTTCTTGGA
GTGGAGACTTTCCAAACCGGAGAAATACGTAAACCACTGAGAGTCGCACA
GTAATATAAACACAAACATTTTTTTACGTGCCGCGAGTGACGTTTGAACA
GAAACCCTGGAGTGGCAAACATGACCTCCTGAAACCCACTAAGCATCGCA
ATGTATGCCGCCTCGATCCTGATCCTGCACCTGACTTGGGCCGTGGCCAC
GATCGCGGCCAACGGTGCCGGCCATAATGGCCCGGTGGCATCCGGAGCAG
GGCCTAACGGATTGCAGTGCCAGCCCATCGCCGTGTCCGCCTGCCAAGGC
CTCGGCTACAACATGACCGCACTGCCCAACCTGGCAGGTCACACCAATCA
GCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTGCCACTAATAGAATCCG
GCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTCGTCTCTGTTTCCGCTG
TGCACGCCGGATGTGCCACGCCCCGTTGCCGCCTGCAAATTGCTGTGCGA
GACTGTTAGGGGCGAGTGTATGGAAAACGCTCCGCCGGAACTGATGGAGC
TGTGGCCTTCGTTCCTTAACTGCGACGGACTGCCGCAGCCGGAGAAGCAC
GAGTTGTGCATGCAGATTCCACAGGAGGTGGCTGTGCCAGGCGGGAGTCC
AAGTGGTCCGCCCACCACTGGTTCACCTGGCGTCGAAGATCACCCGCAGA
CGTACCGCTTTTGGAAAAGCGGAGCATCTCCCACCTCTGACTTGGCTGGC
GTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCTTTAATCCGGAGGAGTG
CGTGCCCCAGTGTCAGCGGGACGCCTTCCACACGAGCTCTCAGAAGAAGA
CGTCTGAGACCCTCATTCTAGGCCTCTCGGCCGTCTGCTTCGTCCTGACA
CTGTTCGCCTTGGTGACCTTCTGGGCGGAGCCCACCAGGTTTGGCTACCC
CGAGAGACCAGTGCTCTTCCTGTGCCTGTGCTACAACCTCTTCAGCGTGT
GCTATCTGGAGCGAATCGTGTTCCACAATCAAGCAAGGATGCATGACGTC
GAGCTGCAATGGCGGCTGATGCGACCGGGTTGCTTGCTGACGCCCCCTTG
CCTGGCCTCCTACATAACCACCTCCTATTTAAGCCTGTGTGCAGCCAGCT
GGTGGCTGATATTTGCCCTGTGCTTCTACCTGTCCTCCCACAAAAAGTGG
TCCAGCGAGGCGCTGGAAAAGAGGTCCGGGCTGTTCCACGTTCTGGCCTG
GGTGCCACCGCTGGCGCCCCCCATTGCCGCCCTGCTGCTGGAGAAGGTGC
GTCCGAGTGAGCTGACTGGGATGTGCTACGCACCGGGATTTGTGGAGCTG
CCAGCACTGGTCCTGCTCCTGCTTGGGCTGTACTTCACCCTGAGAGCCTC
CAGGTCTCTGCTCTCCCTGCAGCAACAGTTGCAGCCCACCCTGGCCCACC
ACCGATTCGGGCAGATCCGGAAGCGCTTTGTGCTCTTCTCCCTGCTGTAC
TTCGCACCCACGACCGCCGGCGTCGTGGCGGCTCTTTGCGAGCGGTACGC
GGATTCAGTGCCCAGCTGCTCCACACCCGATGACTGCCTCTCACCCACTC
CGCTCAGTGCCTGGCCAGCGTTGGTCCGGATCTTCTTCCAGCTGGTGGGC
GGAACGTTGACAGGGTTGTGGGTGTGGTCGCGCAAAACCTGCGAGAGCTA
CAGAAATCGGCTGGGTGCCAGCGGCACACCCACCTCATCCCTGATGAATC
AAAGCAAGGCGGCCGGGGCTTTGCCCAAAAAGCATTTGTATACGAGTGGG
AAATCCATGCTGCCCACGGGGGGAATCACTCCTCTATATGCTGGTATTAG
TTTTCACAATGTGCCCGTCTACAACCCCAACCAATCGAGAGTTTAGGGGA
TCTTTTAGCCCACATGGGGGGCTCTAGAAAAATCTCGAACTCTACTATTG
TACATATAACATATACATACATCATAGAAGGCTTTGAGCCGCGGTGAGAG
AACATGATCGAACATACGCCTAGTTTTTAAGCCCGAAAAGGAGAAACTGA
AATGTGTTAATAGCTTTATAGATCGCGCTCCCCCAAGTACCCATCACCTC
CAGTTTTTATTAGTAGTTCTCTAGCTAGTCCTAAGCCTGTAAATAGTAAA
ACGTTTTATTCATAGTAGAATGAATTGTAAATAAATTATATGAACCAAAA
AAAAAAAAAAAA

RE44178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-RA 2470 fz3-RA 84..2335 1..2251 11205 99.9 Plus
fz3-RB 2251 fz3-RB 411..2246 416..2251 9165 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 675454..677281 417..2244 9095 99.8 Plus
chrX 22417052 chrX 664003..664422 1..419 2005 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 781473..783307 417..2251 9160 99.9 Plus
X 23542271 X 770028..770447 1..419 2050 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 789571..791405 417..2251 9160 99.9 Plus
X 23527363 X 778126..778545 1..419 2060 99.7 Plus
Blast to na_te.dros performed on 2019-03-16 03:33:43 has no hits.

RE44178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:34:25 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 664003..664422 1..419 99 -> Plus
chrX 675457..677283 420..2246 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:08:47 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..1746 201..1946 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:29:48 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..1746 201..1946 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:46:48 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..1746 201..1946 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:06 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..1746 201..1946 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:09:02 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..1746 201..1946 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:08:46 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..2247 1..2246 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:29:48 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..2247 1..2246 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:46:48 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 3..2249 1..2246 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:06 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..2247 1..2246 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:09:02 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 3..2249 1..2246 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:34:25 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
X 770028..770447 1..419 99 -> Plus
X 781476..783302 420..2246 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:34:25 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
X 770028..770447 1..419 99 -> Plus
X 781476..783302 420..2246 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:34:25 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
X 770028..770447 1..419 99 -> Plus
X 781476..783302 420..2246 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:46:48 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 664061..664480 1..419 99 -> Plus
arm_X 675509..677335 420..2246 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:43 Download gff for RE44178.complete
Subject Subject Range Query Range Percent Splice Strand
X 778126..778545 1..419 99 -> Plus
X 789574..791400 420..2246 99   Plus

RE44178.pep Sequence

Translation from 200 to 1945

> RE44178.pep
MYAASILILHLTWAVATIAANGAGHNGPVASGAGPNGLQCQPIAVSACQG
LGYNMTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPL
CTPDVPRPVAACKLLCETVRGECMENAPPELMELWPSFLNCDGLPQPEKH
ELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYRFWKSGASPTSDLAG
VLCPQNFSGSPFNPEECVPQCQRDAFHTSSQKKTSETLILGLSAVCFVLT
LFALVTFWAEPTRFGYPERPVLFLCLCYNLFSVCYLERIVFHNQARMHDV
ELQWRLMRPGCLLTPPCLASYITTSYLSLCAASWWLIFALCFYLSSHKKW
SSEALEKRSGLFHVLAWVPPLAPPIAALLLEKVRPSELTGMCYAPGFVEL
PALVLLLLGLYFTLRASRSLLSLQQQLQPTLAHHRFGQIRKRFVLFSLLY
FAPTTAGVVAALCERYADSVPSCSTPDDCLSPTPLSAWPALVRIFFQLVG
GTLTGLWVWSRKTCESYRNRLGASGTPTSSLMNQSKAAGALPKKHLYTSG
KSMLPTGGITPLYAGISFHNVPVYNPNQSRV*

RE44178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21196-PA 604 GF21196-PA 9..604 6..581 2160 76.5 Plus
Dana\GF24601-PA 581 GF24601-PA 48..563 35..519 423 26.4 Plus
Dana\GF10777-PA 695 GF10777-PA 298..655 218..557 363 28.6 Plus
Dana\GF20940-PA 753 GF20940-PA 101..621 39..544 296 23.6 Plus
Dana\GF10777-PA 695 GF10777-PA 64..182 39..157 217 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12809-PA 584 GG12809-PA 1..584 1..581 2887 94.7 Plus
Dere\GG15682-PA 581 GG15682-PA 48..563 35..519 423 26.4 Plus
Dere\GG13420-PA 694 GG13420-PA 297..654 218..557 363 28.6 Plus
Dere\GG17634-PA 705 GG17634-PA 45..346 39..343 267 27 Plus
Dere\GG13420-PA 694 GG13420-PA 60..181 35..157 225 37.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17662-PA 659 GH17662-PA 28..659 27..581 1982 66.8 Plus
Dgri\GH17099-PA 583 GH17099-PA 47..565 35..519 429 26 Plus
Dgri\GH16736-PA 703 GH16736-PA 307..663 215..557 371 28.8 Plus
Dgri\GH24301-PA 721 GH24301-PA 64..444 39..393 278 25.8 Plus
Dgri\GH16736-PA 703 GH16736-PA 80..201 35..157 219 36.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-PC 581 CG16785-PC 1..581 1..581 3118 100 Plus
fz3-PA 581 CG16785-PA 1..581 1..581 3118 100 Plus
fz3-PB 646 CG16785-PB 138..646 73..581 2741 100 Plus
fz2-PG 694 CG9739-PG 45..654 19..557 550 27.5 Plus
fz2-PE 694 CG9739-PE 45..654 19..557 550 27.5 Plus
fz2-PD 694 CG9739-PD 45..654 19..557 550 27.5 Plus
fz2-PC 694 CG9739-PC 45..654 19..557 550 27.5 Plus
fz2-PA 694 CG9739-PA 45..654 19..557 550 27.5 Plus
fz2-PB 694 CG9739-PB 45..654 19..557 550 27.5 Plus
fz2-PF 806 CG9739-PF 45..654 19..557 550 27.5 Plus
fz-PA 581 CG17697-PA 48..563 35..519 469 25.8 Plus
fz-PC 612 CG17697-PC 48..563 35..519 469 25.8 Plus
fz4-PA 705 CG4626-PA 12..584 6..540 335 23.2 Plus
fz4-PB 705 CG4626-PB 12..584 6..540 335 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11128-PA 626 GI11128-PA 41..626 35..581 2139 74.3 Plus
Dmoj\GI11701-PA 581 GI11701-PA 49..563 35..519 446 26.4 Plus
Dmoj\GI13462-PA 717 GI13462-PA 293..650 218..557 377 29.1 Plus
Dmoj\GI11047-PA 728 GI11047-PA 43..561 39..521 283 23.3 Plus
Dmoj\GI13462-PA 717 GI13462-PA 69..187 39..157 220 36.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26757-PA 639 GL26757-PA 10..639 7..581 2065 70.4 Plus
Dper\GL20917-PA 701 GL20917-PA 304..661 218..557 362 28.6 Plus
Dper\GL21009-PA 395 GL21009-PA 33..300 21..286 294 30.3 Plus
Dper\GL14637-PA 740 GL14637-PA 51..358 39..343 274 27.3 Plus
Dper\GL20917-PA 701 GL20917-PA 59..191 24..157 221 36.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14147-PA 659 GA14147-PA 238..659 197..581 1614 78.7 Plus
Dpse\GA14615-PA 584 GA14615-PA 33..566 21..519 438 26.7 Plus
Dpse\GA21999-PA 698 GA21999-PA 301..658 218..557 362 28.6 Plus
Dpse\GA18313-PA 743 GA18313-PA 47..358 35..343 276 27.3 Plus
Dpse\GA21999-PA 698 GA21999-PA 57..189 24..157 221 36.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19089-PA 688 GM19089-PA 181..688 74..581 2635 97.8 Plus
Dsec\GM25464-PA 581 GM25464-PA 39..563 30..519 427 26.5 Plus
Dsec\GM14888-PA 694 GM14888-PA 297..654 218..557 362 28.6 Plus
Dsec\GM19089-PA 688 GM19089-PA 1..77 1..75 342 89.6 Plus
Dsec\GM17477-PA 557 GM17477-PA 45..245 39..248 259 32.7 Plus
Dsec\GM14888-PA 694 GM14888-PA 60..181 35..157 225 37.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16528-PA 510 GD16528-PA 41..510 74..581 2370 90.7 Plus
Dsim\GD14489-PA 415 GD14489-PA 39..404 30..384 375 28.7 Plus
Dsim\GD12297-PA 693 GD12297-PA 296..653 218..557 362 28.6 Plus
Dsim\GD16161-PA 652 GD16161-PA 2..294 48..343 245 25.4 Plus
Dsim\GD12297-PA 693 GD12297-PA 60..181 35..157 225 37.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19053-PA 619 GJ19053-PA 1..619 1..581 2126 72.4 Plus
Dvir\fz-PA 580 GJ11377-PA 48..562 35..519 441 26.2 Plus
Dvir\GJ11825-PA 682 GJ11825-PA 286..642 215..557 373 28.8 Plus
Dvir\GJ17044-PA 702 GJ17044-PA 43..548 39..521 319 25.5 Plus
Dvir\GJ11825-PA 682 GJ11825-PA 60..181 35..157 214 36.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20092-PA 614 GK20092-PA 43..614 33..581 1809 64.7 Plus
Dwil\GK12696-PA 591 GK12696-PA 37..573 15..519 460 26.8 Plus
Dwil\GK12461-PA 701 GK12461-PA 304..661 218..557 373 28.8 Plus
Dwil\GK25820-PA 676 GK25820-PA 40..550 39..521 309 23.9 Plus
Dwil\GK12461-PA 701 GK12461-PA 68..189 35..157 222 37.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16636-PA 589 GE16636-PA 1..589 1..581 2700 93.2 Plus
Dyak\GE22012-PA 581 GE22012-PA 48..563 35..519 424 26.4 Plus
Dyak\GE22913-PA 609 GE22913-PA 212..569 218..557 361 28.6 Plus
Dyak\GE17540-PA 708 GE17540-PA 47..348 39..343 283 26.4 Plus

RE44178.hyp Sequence

Translation from 200 to 1945

> RE44178.hyp
MYAASILILHLTWAVATIAANGAGHNGPVASGAGPNGLQCQPIAVSACQG
LGYNMTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPL
CTPDVPRPVAACKLLCETVRGECMENAPPELMELWPSFLNCDGLPQPEKH
ELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYRFWKSGASPTSDLAG
VLCPQNFSGSPFNPEECVPQCQRDAFHTSSQKKTSETLILGLSAVCFVLT
LFALVTFWAEPTRFGYPERPVLFLCLCYNLFSVCYLERIVFHNQARMHDV
ELQWRLMRPGCLLTPPCLASYITTSYLSLCAASWWLIFALCFYLSSHKKW
SSEALEKRSGLFHVLAWVPPLAPPIAALLLEKVRPSELTGMCYAPGFVEL
PALVLLLLGLYFTLRASRSLLSLQQQLQPTLAHHRFGQIRKRFVLFSLLY
FAPTTAGVVAALCERYADSVPSCSTPDDCLSPTPLSAWPALVRIFFQLVG
GTLTGLWVWSRKTCESYRNRLGASGTPTSSLMNQSKAAGALPKKHLYTSG
KSMLPTGGITPLYAGISFHNVPVYNPNQSRV*

RE44178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-PC 581 CG16785-PC 1..581 1..581 3118 100 Plus
fz3-PA 581 CG16785-PA 1..581 1..581 3118 100 Plus
fz3-PB 646 CG16785-PB 138..646 73..581 2741 100 Plus
fz2-PG 694 CG9739-PG 45..654 19..557 550 27.5 Plus
fz2-PE 694 CG9739-PE 45..654 19..557 550 27.5 Plus