Clone RE44251 Report

Search the DGRC for RE44251

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:442
Well:51
Vector:pFlc-1
Associated Gene/TranscriptCG14117-RD
Protein status:RE44251.pep: gold
Preliminary Size:702
Sequenced Size:1065

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14117 2002-01-01 Sim4 clustering to Release 2
CG14117 2002-06-07 Blastp of sequenced clone
CG14117 2003-01-01 Sim4 clustering to Release 3
CG14117 2008-04-29 Release 5.5 accounting
CG14117 2008-08-15 Release 5.9 accounting
CG14117 2008-12-18 5.12 accounting

Clone Sequence Records

RE44251.complete Sequence

1065 bp (1065 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119643

> RE44251.complete
AAAAAGCAATGACTGATCAGCTGTCCAAAAACCTAAATAATAAATAATTT
GAATATTAATAAATAAATAAAGTTTTTAAGAAAATCTGGAGGAGCACAAA
TATTAGAAGAAAATTCAGAAAAACAAAGTCACTGTCAAAACACCATCAAA
TATGAACCGGACCCTGAAGATACAAATGAACAAATGATAAAGAATACAGA
ACATATTAAGGATAGATGTCAAAATTTCATAAAAACGGAAAATCCCACAG
ATTTATCTTATTCCCAGACTGGCTTATAAGAGGTAATTATGTTAGATGTT
AATGATCTGGTTAAGGAGGAGTTCGCCCTGGAGGATCCAAATGAGGAAGA
GCACAATCAAAGAGACGAGGAAGAGATAAGCTATCAATTGGCTGGCCAGC
CAAAAATGTGTTCTACGTGCTTGGAGGCTTTTCCCATCGACAACTTTTCA
TCTCACGCATGCTGGGACATCAATTGCGATCGATTCAGCTGCAAAATCTT
CCCTCGAAAGTTTCGTTACAAGTCATTGCTTAAAAAGCCACGTCAGACGG
CAAAAGGGCGAGAGCATAGCGGAACTGGATTTAGCGAAACCCACAGACTC
CAGGACCAAGCCCAACTTCGAGTTAAACTACTCACCCACTCCAAGGTGGA
AGATATCTCGACGGAGAGCTGGGATGCTGAAGCTCAACGAAATGCGTGTG
CATCAACAACGCCTGTGCCTCTATTGCCCCATTGCCTTCTCAAACGAATC
GCACCTGGAGAAGCACCTGAGGGATCACCATGCTGAGCGCCTTTATACAA
GCGAATTAATAACCCCAGATTTCGAGACTGATGGCTCAGAACGGATATGC
GTCAAATTAAACGAGGATGTAGCCTTTAGCTATTTAGTTCTATACAATCA
CTTGCAAGATTTTATCAAGGGGTATTCTCAAATTTATTTTAGTAATTTAA
TTAAAATAACTAAGCTGTAACGTTAGCAATATAAACGTTATATATATATA
TTGTTATTGTTTATTTGCTTCGTTTTGTTAATTATACAAAATATTTTTCA
AAAAAAAAAAAAAAA

RE44251.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14117.a 1049 CG14117.a 1..1049 2..1049 5205 99.9 Plus
CG14117-RC 1058 CG14117-RC 2..535 2..534 2630 99.8 Plus
CG14117-RB 1113 CG14117-RB 597..1113 533..1049 2585 100 Plus
CG14117-RC 1058 CG14117-RC 542..1058 533..1049 2585 100 Plus
CG14117-RB 1113 CG14117-RB 2..284 2..283 1375 99.6 Plus
CG14117-RB 1113 CG14117-RB 339..590 283..534 1260 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12999225..12999743 535..1048 2345 98.1 Plus
chr3L 24539361 chr3L 12998565..12998847 2..283 1365 99.6 Plus
chr3L 24539361 chr3L 12998901..12999147 284..530 1205 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13008936..13009453 535..1052 2590 100 Plus
3L 28110227 3L 13008285..13008567 2..283 1365 99.6 Plus
3L 28110227 3L 13008622..13008873 283..534 1260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13002036..13002553 535..1052 2590 100 Plus
3L 28103327 3L 13001385..13001667 2..283 1375 99.6 Plus
3L 28103327 3L 13001722..13001973 283..534 1260 100 Plus
Blast to na_te.dros performed 2019-03-16 13:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 222..295 1049..980 116 67.6 Minus
Dhyd\Minos 1773 Dhyd\Minos DHMINOS 1773bp Derived from Z29098. 1462..1512 973..923 111 68.6 Minus

RE44251.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:34:46 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12998900..12999151 284..534 97 -> Plus
chr3L 12999225..12999716 535..1021 91 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:17:35 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RA 1..231 289..519 100 == Plus
CG14117-RA 232..669 533..970 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:29:52 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RC 1..690 289..970 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:02:05 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RD 1..498 289..786 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:09 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RA 1..231 289..519 100 == Plus
CG14117-RA 232..669 533..970 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:14:28 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RD 1..498 289..786 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:59:26 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RA 2..522 2..521 99 == Plus
CG14117-RA 523..1037 535..1049 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:29:52 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RC 2..1058 2..1049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:02:05 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RD 1..1049 2..1049 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:09 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RA 2..522 2..521 99 == Plus
CG14117-RA 523..1037 535..1049 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:28 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
CG14117-RD 1..1049 2..1049 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:46 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13008623..13008873 284..534 100 -> Plus
3L 13008284..13008567 1..283 99 -> Plus
3L 13008936..13009450 535..1049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:46 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13008623..13008873 284..534 100 -> Plus
3L 13008284..13008567 1..283 99 -> Plus
3L 13008936..13009450 535..1049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:46 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13008623..13008873 284..534 100 -> Plus
3L 13008284..13008567 1..283 99 -> Plus
3L 13008936..13009450 535..1049 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:02:05 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13001384..13001667 1..283 99 -> Plus
arm_3L 13001723..13001973 284..534 100 -> Plus
arm_3L 13002036..13002550 535..1049 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:47 Download gff for RE44251.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13001384..13001667 1..283 99 -> Plus
3L 13001723..13001973 284..534 100 -> Plus
3L 13002036..13002550 535..1049 100   Plus

RE44251.pep Sequence

Translation from 288 to 785

> RE44251.pep
MLDVNDLVKEEFALEDPNEEEHNQRDEEEISYQLAGQPKMCSTCLEAFPI
DNFSSHACWDINCDRFSCKIFPRKFRYKSLLKKPRQTAKGREHSGTGFSE
THRLQDQAQLRVKLLTHSKVEDISTESWDAEAQRNACASTTPVPLLPHCL
LKRIAPGEAPEGSPC*

RE44251.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15615-PA 191 GG15615-PA 1..81 1..82 263 73.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14117-PD 165 CG14117-PD 1..165 1..165 891 100 Plus
CG14117-PE 94 CG14117-PE 1..82 1..82 450 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25387-PA 195 GM25387-PA 1..81 1..81 323 86.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14420-PA 195 GD14420-PA 1..83 1..83 318 83.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21942-PA 192 GE21942-PA 1..82 1..82 306 72 Plus

RE44251.hyp Sequence

Translation from 288 to 785

> RE44251.hyp
MLDVNDLVKEEFALEDPNEEEHNQRDEEEISYQLAGQPKMCSTCLEAFPI
DNFSSHACWDINCDRFSCKIFPRKFRYKSLLKKPRQTAKGREHSGTGFSE
THRLQDQAQLRVKLLTHSKVEDISTESWDAEAQRNACASTTPVPLLPHCL
LKRIAPGEAPEGSPC*

RE44251.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14117-PD 165 CG14117-PD 1..165 1..165 891 100 Plus
CG14117-PE 94 CG14117-PE 1..82 1..82 450 100 Plus