BDGP Sequence Production Resources |
Search the DGRC for RE44406
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 444 |
Well: | 6 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Atg4b-RA |
Protein status: | RE44406.pep: gold |
Sequenced Size: | 2652 |
Gene | Date | Evidence |
---|---|---|
CG6194-RA | 2009-06-22 | Replacement based on scoring |
2652 bp assembled on 2009-10-16
GenBank Submission: BT100116.1
> RE44406.complete ATGGGCAATTGTACTTCTCGCGAATAAGAAAAACAAATTTCGTGGAGTTA CTTTATCTTATTTTGTCAACAAATAAACGATGAACTATGACGGCCTCCTT TCCAAGTTGACCGACGAAAAACTGATGCTCTTCGAAGCCGCCGGCGAGGG GACCATTGTAGAGGGTAGCCGGATATGCGGCCAGGATGCGGATCCGCTCT CCTTGCCGCTGGTGGAGGACGGCGCCATCGAGGAGGAGCAGGCGGCCCCC ATACAGACGATTCATCGCACTGTATTCGCCGTTCCACGCGTCCCTTCCCC CTCCCCCGTAAGCACATCAGGTGCCAATCTGAACCTCAAGACGGAAAACG CTGCGACAGCGACTCCGCAGCGCAAAATATCGACGTCATCACGTTTCATG AACGCCTTCAGTCAGCTCTACGGCGGCGGCAACAGCGGTCCGAGCTGCGG TCACGTGGAGCAGCACAACGAGGAACCCGGTGACCTGTCGGCAAACCGTA CTCCCACCAAGGGCATGGAGTCCAAGCTCGTCGCAATGTGGCACAATGTG AAGTATGGCTGGAGCGGCAAGATGAGGCAGACCAGCTTCTCAAAGGAGCA GCCCGTGTGGCTGCTAGGACGGTGCTATCATCGACGCTTTACTCCGCCCG TAAGCATGGAAAGTTCCATCACCGAGCTGCCCAGCGGGGCGGATACCACC CCCGATAACGCCACATCGGCGTTCGACAGCATTCAGGCCACATCGACATC AACCTCCTTGTATCCAGCCCTTAATCCGCAGCAGATCGATGAGATTGTGG TGCCCCAGGAACTGGGAATGGACGCGGTGGAGAACCAAGTGGGCGAACAG CCTTGGGAGGAGGGCATCGAAGGCTTTCGTCGTGACTTTTACAGTAGGAT TTGGATGACCTACCGTCGAGAGTTCCCAATAATGAATGGCTCCAACTACA CCTCGGACTGCGGTTGGGGCTGTATGCTAAGGAGTGGTCAGATGCTCTTC GCTCAAGGACTCATCTGTCACTTCCTAGGGCGAAGCTGGCGCTATGATTC AGAGTCCCAGTTGCACTCGACTTACGAGGACAATATGCATAAGAAGATCG TCAAGTGGTTCGGGGACAGTTCCTCAAAAAGCAGTCCCTTCTCCATCCAC GCCCTGGTGCGGCTGGGGGAGCATTTGGGTAAAAAACCTGGCGATTGGTA CGGTCCCGCCTCTGTTTCCTATTTGCTTAAACACGCCTTAGAGCACGCGG CTCAGGAAAATGCAGACTTTGACAATATTAGTGTCTATGTAGCCAAAGAT TGCACGATTTACTTGCAAGATATTGAGGATCAATGCAGCATTCCGGAACC GGCGCCAAAACCCCATGTGCCTTGGCAACAAGCGAAGCGGCCGCAGGCGG AAACTACCAAAACGGAGCAACAACAGCACTGGAAGTCCCTCATCGTTCTG ATACCTTTGCGCCTGGGCAGTGATAAACTGAATCCTGTGTATGCCCATTG TCTGAAGCTGCTGCTGAGTACAGAACACTGCCTGGGCATCCTTGGTGGAA AGCCAAAGCATTCGCTGTACTTTGTCGGCTTCCAGGAGGACAGGCTCATC CACTTGGATCCGCACTATTGCCAGGAGATGGTGGATGTGAACCAAGAGAA CTTCTCCCTGCACTCGTTTCACTGCAAGTCGCCGCGGAAGCTTAAGGCCA GCAAAATGGATCCTAGTTGTTGTATCGGCTTTTACTGTGCCACCAAAAGT GATTTCGACAATTTTATGGAGAGCGTACAGTTGTATTTGCATCCTATGCG TTGCGCCTCAGGGGCAACTGTGGATAAGGCGGCCGGGAGCCATCATACGA CGCCTCAGTCATCCCATCAAACCGAGCAAACAGAGATGAACTATCCATTG TTCTCATTTTCCCGCGGTCGTTGCATGGATCACGAGCGGGACGAAATGAG CGATTCGCTGTACAAGCCGCTCATAAAACAGGTGGCTTCTCTGGCCCAGG AATTGGGCGCTCAACTGGCGCCGCCACAGCACGGCGATGAGCACGACCAA GATGATAGTGAAAGCGAAGAGTTTGTGCTGCTGTAGATCGTTGCCGCCAC CACCACATAACCCTGTTGCTGTGCTAGCTGTGTTATTTGCTCATTATTAT TTGATTTAGTTGCCAGCCGCTGCTGCTTGCTTGCTCGCCCAGAAAAACCC AACAGACCCGTATCTCAAACACAAAGACTTTGTTGTACCTTTACGCCTAC GCATATAGTACATAGACGCATGCATGTATCTTGAATATTTACTGATGTCC ACGTTAATCTCTCTTTTGTTCGACCTGTCGTCTCGCATTCTGCCAAAGTT TTTCAGCTATTTCCATGTTCGAGCAGCCCGATCTGTTTATATGTGTTATA TATAAACCTATGTAATTTGCGGTATTATTATTTTAAAATCATGAATCTTT AATGGAATTGAATTATTTTACAATGGTGCCACAATTGTCACTATTCTTTG AAGTATTTCATGTAGCGCTTAGTTCTAGAGTTTAGTTAAATTATGTAAGT CGTCTTGTAATTGTTCGATCATTATTTAGTTTTAACATTAATTGTATATA CCCTCGAGTAAATGAATAAACTATCCTAACTTATACAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11180308..11181264 | 1035..79 | 4785 | 100 | Minus |
chr3R | 27901430 | chr3R | 11178355..11179208 | 2636..1783 | 4270 | 100 | Minus |
chr3R | 27901430 | chr3R | 11179268..11179743 | 1783..1308 | 2365 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 11180055..11180250 | 1230..1035 | 980 | 100 | Minus |
chr3R | 27901430 | chr3R | 11179911..11179987 | 1307..1231 | 385 | 100 | Minus |
chr3R | 27901430 | chr3R | 11181448..11181527 | 83..4 | 385 | 98.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15355673..15356629 | 1035..79 | 4785 | 100 | Minus |
3R | 32079331 | 3R | 15353716..15354573 | 2640..1783 | 4275 | 99.9 | Minus |
3R | 32079331 | 3R | 15354633..15355108 | 1783..1308 | 2380 | 100 | Minus |
3R | 32079331 | 3R | 15355420..15355615 | 1230..1035 | 980 | 100 | Minus |
3R | 32079331 | 3R | 15355276..15355352 | 1307..1231 | 385 | 100 | Minus |
3R | 32079331 | 3R | 15356813..15356892 | 83..4 | 385 | 98.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15096504..15097460 | 1035..79 | 4785 | 100 | Minus |
3R | 31820162 | 3R | 15094547..15095404 | 2640..1783 | 4275 | 99.8 | Minus |
3R | 31820162 | 3R | 15095464..15095939 | 1783..1308 | 2380 | 100 | Minus |
3R | 31820162 | 3R | 15096251..15096446 | 1230..1035 | 980 | 100 | Minus |
3R | 31820162 | 3R | 15096107..15096183 | 1307..1231 | 385 | 100 | Minus |
3R | 31820162 | 3R | 15097644..15097723 | 83..4 | 385 | 98.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11178355..11179207 | 1784..2636 | 100 | <- | Minus |
chr3R | 11179268..11179743 | 1308..1783 | 99 | <- | Minus |
chr3R | 11179911..11179987 | 1231..1307 | 100 | <- | Minus |
chr3R | 11180055..11180250 | 1035..1230 | 100 | <- | Minus |
chr3R | 11180309..11181263 | 80..1034 | 100 | <- | Minus |
chr3R | 11181452..11181530 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6194-RA | 1..2007 | 80..2086 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6194-RA | 1..2007 | 80..2086 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6194-RA | 1..2007 | 80..2086 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4b-RA | 1..2007 | 80..2086 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6194-RA | 25..2660 | 1..2636 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6194-RA | 25..2660 | 1..2636 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6194-RA | 30..2665 | 1..2636 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4b-RA | 30..2665 | 1..2636 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15353720..15354572 | 1784..2636 | 100 | <- | Minus |
3R | 15354633..15355108 | 1308..1783 | 100 | <- | Minus |
3R | 15355276..15355352 | 1231..1307 | 100 | <- | Minus |
3R | 15355420..15355615 | 1035..1230 | 100 | <- | Minus |
3R | 15355674..15356628 | 80..1034 | 100 | <- | Minus |
3R | 15356817..15356895 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15353720..15354572 | 1784..2636 | 100 | <- | Minus |
3R | 15354633..15355108 | 1308..1783 | 100 | <- | Minus |
3R | 15355276..15355352 | 1231..1307 | 100 | <- | Minus |
3R | 15355420..15355615 | 1035..1230 | 100 | <- | Minus |
3R | 15355674..15356628 | 80..1034 | 100 | <- | Minus |
3R | 15356817..15356895 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15353720..15354572 | 1784..2636 | 100 | <- | Minus |
3R | 15354633..15355108 | 1308..1783 | 100 | <- | Minus |
3R | 15355276..15355352 | 1231..1307 | 100 | <- | Minus |
3R | 15355420..15355615 | 1035..1230 | 100 | <- | Minus |
3R | 15355674..15356628 | 80..1034 | 100 | <- | Minus |
3R | 15356817..15356895 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11179442..11180294 | 1784..2636 | 100 | <- | Minus |
arm_3R | 11180355..11180830 | 1308..1783 | 100 | <- | Minus |
arm_3R | 11180998..11181074 | 1231..1307 | 100 | <- | Minus |
arm_3R | 11181142..11181337 | 1035..1230 | 100 | <- | Minus |
arm_3R | 11181396..11182350 | 80..1034 | 100 | <- | Minus |
arm_3R | 11182539..11182617 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15094551..15095403 | 1784..2636 | 100 | <- | Minus |
3R | 15095464..15095939 | 1308..1783 | 100 | <- | Minus |
3R | 15096107..15096183 | 1231..1307 | 100 | <- | Minus |
3R | 15096251..15096446 | 1035..1230 | 100 | <- | Minus |
3R | 15096505..15097459 | 80..1034 | 100 | <- | Minus |
3R | 15097648..15097726 | 1..79 | 98 | Minus |
Translation from 79 to 2085
> RE44406.pep MNYDGLLSKLTDEKLMLFEAAGEGTIVEGSRICGQDADPLSLPLVEDGAI EEEQAAPIQTIHRTVFAVPRVPSPSPVSTSGANLNLKTENAATATPQRKI STSSRFMNAFSQLYGGGNSGPSCGHVEQHNEEPGDLSANRTPTKGMESKL VAMWHNVKYGWSGKMRQTSFSKEQPVWLLGRCYHRRFTPPVSMESSITEL PSGADTTPDNATSAFDSIQATSTSTSLYPALNPQQIDEIVVPQELGMDAV ENQVGEQPWEEGIEGFRRDFYSRIWMTYRREFPIMNGSNYTSDCGWGCML RSGQMLFAQGLICHFLGRSWRYDSESQLHSTYEDNMHKKIVKWFGDSSSK SSPFSIHALVRLGEHLGKKPGDWYGPASVSYLLKHALEHAAQENADFDNI SVYVAKDCTIYLQDIEDQCSIPEPAPKPHVPWQQAKRPQAETTKTEQQQH WKSLIVLIPLRLGSDKLNPVYAHCLKLLLSTEHCLGILGGKPKHSLYFVG FQEDRLIHLDPHYCQEMVDVNQENFSLHSFHCKSPRKLKASKMDPSCCIG FYCATKSDFDNFMESVQLYLHPMRCASGATVDKAAGSHHTTPQSSHQTEQ TEMNYPLFSFSRGRCMDHERDEMSDSLYKPLIKQVASLAQELGAQLAPPQ HGDEHDQDDSESEEFVLL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23235-PA | 668 | GF23235-PA | 1..668 | 1..668 | 3037 | 85.8 | Plus |
Dana\GF15159-PA | 402 | GF15159-PA | 63..329 | 263..563 | 464 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20629-PA | 708 | GG20629-PA | 38..708 | 1..668 | 3554 | 97 | Plus |
Dere\GG24763-PA | 411 | GG24763-PA | 63..333 | 263..567 | 422 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16873-PA | 673 | GH16873-PA | 1..673 | 1..668 | 2717 | 76.4 | Plus |
Dgri\GH13687-PA | 393 | GH13687-PA | 63..335 | 263..567 | 472 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg4b-PA | 668 | CG6194-PA | 1..668 | 1..668 | 3590 | 100 | Plus |
Atg4a-PB | 410 | CG4428-PB | 63..333 | 263..567 | 452 | 32.9 | Plus |
Atg4a-PA | 411 | CG4428-PA | 63..333 | 263..567 | 452 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10728-PA | 682 | GI10728-PA | 1..682 | 1..668 | 2760 | 75.1 | Plus |
Dmoj\GI17971-PA | 382 | GI17971-PA | 57..329 | 263..567 | 465 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13755-PA | 678 | GL13755-PA | 1..678 | 1..668 | 2956 | 86.5 | Plus |
Dper\GL15485-PA | 409 | GL15485-PA | 63..333 | 263..567 | 421 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19429-PB | 676 | GA19429-PB | 1..676 | 1..668 | 2961 | 87.5 | Plus |
Dpse\GA18177-PA | 409 | GA18177-PA | 63..333 | 263..567 | 424 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25780-PA | 703 | GM25780-PA | 35..703 | 1..668 | 3593 | 98.7 | Plus |
Dsec\GM16788-PA | 269 | GM16788-PA | 1..187 | 351..563 | 259 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20357-PA | 703 | GD20357-PA | 35..703 | 1..668 | 3607 | 99.1 | Plus |
Dsim\GD23066-PA | 411 | GD23066-PA | 63..329 | 263..563 | 419 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10670-PA | 672 | GJ10670-PA | 1..672 | 1..668 | 2710 | 78.1 | Plus |
Dvir\GJ16311-PA | 397 | GJ16311-PA | 57..329 | 263..567 | 463 | 33.9 | Plus |
Translation from 79 to 2085
> RE44406.hyp MNYDGLLSKLTDEKLMLFEAAGEGTIVEGSRICGQDADPLSLPLVEDGAI EEEQAAPIQTIHRTVFAVPRVPSPSPVSTSGANLNLKTENAATATPQRKI STSSRFMNAFSQLYGGGNSGPSCGHVEQHNEEPGDLSANRTPTKGMESKL VAMWHNVKYGWSGKMRQTSFSKEQPVWLLGRCYHRRFTPPVSMESSITEL PSGADTTPDNATSAFDSIQATSTSTSLYPALNPQQIDEIVVPQELGMDAV ENQVGEQPWEEGIEGFRRDFYSRIWMTYRREFPIMNGSNYTSDCGWGCML RSGQMLFAQGLICHFLGRSWRYDSESQLHSTYEDNMHKKIVKWFGDSSSK SSPFSIHALVRLGEHLGKKPGDWYGPASVSYLLKHALEHAAQENADFDNI SVYVAKDCTIYLQDIEDQCSIPEPAPKPHVPWQQAKRPQAETTKTEQQQH WKSLIVLIPLRLGSDKLNPVYAHCLKLLLSTEHCLGILGGKPKHSLYFVG FQEDRLIHLDPHYCQEMVDVNQENFSLHSFHCKSPRKLKASKMDPSCCIG FYCATKSDFDNFMESVQLYLHPMRCASGATVDKAAGSHHTTPQSSHQTEQ TEMNYPLFSFSRGRCMDHERDEMSDSLYKPLIKQVASLAQELGAQLAPPQ HGDEHDQDDSESEEFVLL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg4b-PA | 668 | CG6194-PA | 1..668 | 1..668 | 3590 | 100 | Plus |
Atg4a-PB | 410 | CG4428-PB | 63..333 | 263..567 | 452 | 32.9 | Plus |
Atg4a-PA | 411 | CG4428-PA | 63..333 | 263..567 | 452 | 32.9 | Plus |