Clone RE44586 Report

Search the DGRC for RE44586

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:445
Well:86
Vector:pFlc-1
Associated Gene/TranscriptCG11210-RA
Protein status:RE44586.pep: gold
Preliminary Size:2427
Sequenced Size:2878

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11210 2002-01-01 Sim4 clustering to Release 2
CG11210 2003-01-01 Sim4 clustering to Release 3
CG11210 2003-08-12 Blastp of sequenced clone
CG11210 2008-04-29 Release 5.5 accounting
CG11210 2008-08-15 Release 5.9 accounting
CG11210 2008-12-18 5.12 accounting

Clone Sequence Records

RE44586.complete Sequence

2878 bp (2878 high quality bases) assembled on 2003-08-12

GenBank Submission: BT011035

> RE44586.complete
ATCGATAACAGCCAGCAAAATGAAGTAAAGTAGCGAAAGGCAATTATTCC
ATATACCTTTTACGACACAGGTTGCTTTTATTGATGAACACGATTGAGGA
TATTAAAGGCTGATGTTTAATGTGAAGCTTCGCAAAATAAGTTACTGGAA
ATAAAACATTTCACCTAAGTGAAATTCATGGTCATGTCGGAAAACAGCAA
CATTTCCTACTGCCAGGCGGTGGCCAATCGCACTTCGTTCTTTACCACCG
CCTATAATGGCATTCCGGAAACCCTAATACTCAACACCATTTTCTGGGTA
CTCCTGATCCTTTTGTTTACGGTTCTGCGGCACCAGGCCGGTGACTTTGG
ACGTCTAGCGCTGGTCAACAGCAACGGCAGCAAGAAGCGCTGGACGGAGA
TTTTCTACTCGCGCGCCGCCAGTGTGGTCGATCCCCAGCCGAGCACTTCA
ACGCAGGTATCGCCTAGACCAAGTACCACCTCCCAAGGAGTTCCCGACTC
CACGCCCTTGTCCCCTATCCAGCCGGAGGAGGGGCTTTTCGGCTGGATAC
GGGTTACGCTGAAGCTGCGTAAGGAGACCATACTGCTGCATACTGGACCG
GATGCCGTGCATTACTTGTCCTTTCAGCAGCACCTGATGGCTGTAATGGC
ATTGGTTACCATAGTCTCCCTGGTCATTATTCTGCCTGTGAATTTCCTGA
ACGGGCCCAAGGAAAATCCGTACGATGTGAATGCCTTCGGACGCACCACG
ATGGCGAATCTTTCTCCGGATTCACCTTGGCTGTGGGTGCACACGATCAT
CACGATTCTGTATATTCCGCTCGTAGTGCTCATCATGCGGCGCGCCTCGG
GACGGAATGCCTTCAAAAAGGCAGCCACCCGCACGATTATGATTTCAAAC
ATATCCTCCAGCGATCGCAACAAGACTGTGGTACGGAACTATATGCAGGA
GCTCTTTCCGGACGTCACCATCGAGAATGTGTCAATTGCGTACAACATTT
CACGACTATACGTAAGGAACGCCGAGTTCGAGCGAGTTCATGAAGCACGA
TTGTACTGCGAGCACCATAGGAACAGGGATACTCTCATGGTTAAACCAGA
AATGTGTTCCTGCAAAAAGGAGAACGCCTACGAATATTATCAGCGAGAGG
AGCGCAAGTTGTCCGGCGATGTTGCCCGTCTGCGTGCTTCCACCATGAAT
GAGCCCCTGGACATTGCGTTTATCACCGTGTCCACTGTGCAGGAGGCCCA
GAACATAGTAACGCACTTTACACCGGGCACCTACCGCCAATGGCACTTGG
TGTTCGCTCCGTCGCCTGATGATCTTTTTTGGGAGAACCTAAATGTGAAT
AAGAGTCATTGGTACTTGAAATTCTTCTGTGTGAATGCAGTGCTTTTTCT
TGTTCTCTTCTTCCTGTCCACACCGGCCATGGTGGTAAGCCTTCTAAACA
GTCGACCATGGGTAAAGGAAACAGAGGGTAAGATCTCGCCCCTCGTTGCC
GACTTCCTGCCCACATTGATGCTCTGGACTCTTTCGGCTCTAATGCCTGT
GATTGTTGCCATTTCGGACAAGTGGATGCGGCACTACACGCGCTCCAAGC
AGAACTACTCAATCATGACGAAGTGCTTTGGCTATCTGCTTATGATGATC
ATGATTCTGCCTTCCCTCGGACTGACATCGGCACAGGCGCTGCTAGAGTG
GGGATTCTTAAATCAGACTGATCGCTGGCAGTGCATTTTCCTGCCGGATC
GCGGCTCCTTCTATGTGAACTACATCATTACGGCTGCGTTTATCGGTACA
GCGTTGGAGCTGCTACGCTTCCCGGAGCTGATTGTATATATCTGGTCATT
GCTAAAGGCGAAATCCAAGGCCGAAACGCCGTACATTCGTAAGGCTATTC
TAATCGAGTTTCCTTTCGGAACGCACTACGCCTGGACAACGCTCGTTTTC
ACCATAGCCATTGTGTATAGCGTTGCCTGTCCGCTGATTATGCCGTTCGC
CATGATCTACATCTGCCTAAAACACTTCGTGGATCGCCACAACCTCTACT
TTGCCTACGGTCCGTCAAACATGATATCACGCAAGGGTGGTAAGATCCAC
TCCACTGCAGTTACGATGACAAAGTTCTCGGTCGTGATCCTGGTACTGGT
CATGGCCATGATTTGTTTCTTCCGTGGCGATAACGGAATGGCTCGATTCC
TGCTGCTTATCATCAGCCTGGCTATCACATTGACTTTGTTCACCTTTATG
TCACCAATTAAGCGGTGTGCGGCCACGCGCCGCCCAAGCATTGTGGAAAT
TGCCGGTCCGGCACCCATCTACGTGCCCGATGTGCTGAAAGATAATGGGA
TAAGGACCAGCAGTGTGCGACCTTCGGCGGCAGCATTTGGGGGCTACGGC
TCCGACAGCGTGTCCGAGTACGACAGCTCACAATACAGCGTCAACAGTGT
TGAGGCGTAAATGGTATTATTGTCGGGAGACACTACAAATATTTTTGTAA
TATATCTACAAAAGCCACTAAGAACTTTTCAAGTTGGCAGCTTTGATTTG
CATACGAAAGAATGACAGGAGGATAACAGCAAGGCAATTTGTGATACCTA
AACCAGCCTCAATGTCATTTTTAATATGACCCCTGCACGCGAAAGCGATA
GCAATATTTATTTCTGATCTGTATATAATCTACCTAATTTCCCAATTTTA
TCTGTAACTGTATATATACTATATTCCTTTGCTAACTGCTTAACAAAGGG
CTCGACGCTGATTTTTTGAAGCAGTAATGCTGGTAATATTTTACAAATGA
AACACGAAGTGCATTATATTTTCAAGTAATTTTTTATTTATGGTAAATAA
AAAACTATTAAGAAAAAAAAAAAAAAAA

RE44586.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11210-RA 3120 CG11210-RA 47..2908 1..2862 14310 100 Plus
cul-4-RA 3362 cul-4-RA 3316..3362 2862..2816 235 100 Minus
cul-4-RB 3425 cul-4-RB 3379..3425 2862..2816 235 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3987973..3989746 1089..2862 8870 100 Plus
chr2R 21145070 chr2R 3986994..3987917 168..1091 4575 99.7 Plus
chr2R 21145070 chr2R 3986125..3986293 1..169 830 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8100533..8102306 1089..2862 8870 100 Plus
2R 25286936 2R 8099554..8100477 168..1091 4620 100 Plus
2R 25286936 2R 8098685..8098853 1..169 845 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8101732..8103505 1089..2862 8870 100 Plus
2R 25260384 2R 8100753..8101676 168..1091 4620 100 Plus
2R 25260384 2R 8099884..8100052 1..169 845 100 Plus
Blast to na_te.dros performed 2019-03-16 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 5175..5217 2854..2812 116 74.4 Minus

RE44586.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:33 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3986125..3986293 1..169 99 -> Plus
chr2R 3986996..3987915 170..1089 99 -> Plus
chr2R 3987974..3989746 1090..2862 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:17:42 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 1..2283 178..2460 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:41 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 1..2283 178..2460 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:23 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 1..2283 178..2460 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:14 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 1..2283 178..2460 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:45 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 1..2283 178..2460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:04:36 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 1..2460 1..2460 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:41 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 9..2870 1..2862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:23 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 2..2863 1..2862 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:15 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 1..2460 1..2460 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:45 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
CG11210-RA 2..2863 1..2862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:33 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8098685..8098853 1..169 100 -> Plus
2R 8099556..8100475 170..1089 100 -> Plus
2R 8100534..8102306 1090..2862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:33 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8098685..8098853 1..169 100 -> Plus
2R 8099556..8100475 170..1089 100 -> Plus
2R 8100534..8102306 1090..2862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:33 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8098685..8098853 1..169 100 -> Plus
2R 8099556..8100475 170..1089 100 -> Plus
2R 8100534..8102306 1090..2862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:23 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3986190..3986358 1..169 100 -> Plus
arm_2R 3987061..3987980 170..1089 100 -> Plus
arm_2R 3988039..3989811 1090..2862 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:40 Download gff for RE44586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8100755..8101674 170..1089 100 -> Plus
2R 8101733..8103505 1090..2862 100   Plus
2R 8099884..8100052 1..169 100 -> Plus

RE44586.pep Sequence

Translation from 177 to 2459

> RE44586.pep
MVMSENSNISYCQAVANRTSFFTTAYNGIPETLILNTIFWVLLILLFTVL
RHQAGDFGRLALVNSNGSKKRWTEIFYSRAASVVDPQPSTSTQVSPRPST
TSQGVPDSTPLSPIQPEEGLFGWIRVTLKLRKETILLHTGPDAVHYLSFQ
QHLMAVMALVTIVSLVIILPVNFLNGPKENPYDVNAFGRTTMANLSPDSP
WLWVHTIITILYIPLVVLIMRRASGRNAFKKAATRTIMISNISSSDRNKT
VVRNYMQELFPDVTIENVSIAYNISRLYVRNAEFERVHEARLYCEHHRNR
DTLMVKPEMCSCKKENAYEYYQREERKLSGDVARLRASTMNEPLDIAFIT
VSTVQEAQNIVTHFTPGTYRQWHLVFAPSPDDLFWENLNVNKSHWYLKFF
CVNAVLFLVLFFLSTPAMVVSLLNSRPWVKETEGKISPLVADFLPTLMLW
TLSALMPVIVAISDKWMRHYTRSKQNYSIMTKCFGYLLMMIMILPSLGLT
SAQALLEWGFLNQTDRWQCIFLPDRGSFYVNYIITAAFIGTALELLRFPE
LIVYIWSLLKAKSKAETPYIRKAILIEFPFGTHYAWTTLVFTIAIVYSVA
CPLIMPFAMIYICLKHFVDRHNLYFAYGPSNMISRKGGKIHSTAVTMTKF
SVVILVLVMAMICFFRGDNGMARFLLLIISLAITLTLFTFMSPIKRCAAT
RRPSIVEIAGPAPIYVPDVLKDNGIRTSSVRPSAAAFGGYGSDSVSEYDS
SQYSVNSVEA*

RE44586.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13662-PA 759 GF13662-PA 1..759 3..760 3556 88.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23334-PA 758 GG23334-PA 1..758 3..760 3951 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21905-PA 755 GH21905-PA 7..755 5..760 3390 83.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11210-PA 760 CG11210-PA 1..760 1..760 3943 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19256-PA 765 GI19256-PA 12..765 8..760 3519 86 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17104-PA 758 GL17104-PA 1..757 3..759 3529 89.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10844-PA 758 GA10844-PA 1..757 3..759 3526 89.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21007-PA 758 GM21007-PA 1..758 3..760 4000 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10542-PA 758 GD10542-PA 1..758 3..760 3987 97.6 Plus
Dsim\GD10541-PA 214 GD10541-PA 1..179 3..181 910 95 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22131-PA 766 GJ22131-PA 13..766 8..760 3469 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23079-PA 755 GK23079-PA 1..755 3..760 3551 87.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19176-PA 431 GE19176-PA 182..431 511..760 1229 93.2 Plus
Dyak\GE19176-PA 431 GE19176-PA 1..218 3..221 959 84.5 Plus

RE44586.hyp Sequence

Translation from 177 to 2459

> RE44586.hyp
MVMSENSNISYCQAVANRTSFFTTAYNGIPETLILNTIFWVLLILLFTVL
RHQAGDFGRLALVNSNGSKKRWTEIFYSRAASVVDPQPSTSTQVSPRPST
TSQGVPDSTPLSPIQPEEGLFGWIRVTLKLRKETILLHTGPDAVHYLSFQ
QHLMAVMALVTIVSLVIILPVNFLNGPKENPYDVNAFGRTTMANLSPDSP
WLWVHTIITILYIPLVVLIMRRASGRNAFKKAATRTIMISNISSSDRNKT
VVRNYMQELFPDVTIENVSIAYNISRLYVRNAEFERVHEARLYCEHHRNR
DTLMVKPEMCSCKKENAYEYYQREERKLSGDVARLRASTMNEPLDIAFIT
VSTVQEAQNIVTHFTPGTYRQWHLVFAPSPDDLFWENLNVNKSHWYLKFF
CVNAVLFLVLFFLSTPAMVVSLLNSRPWVKETEGKISPLVADFLPTLMLW
TLSALMPVIVAISDKWMRHYTRSKQNYSIMTKCFGYLLMMIMILPSLGLT
SAQALLEWGFLNQTDRWQCIFLPDRGSFYVNYIITAAFIGTALELLRFPE
LIVYIWSLLKAKSKAETPYIRKAILIEFPFGTHYAWTTLVFTIAIVYSVA
CPLIMPFAMIYICLKHFVDRHNLYFAYGPSNMISRKGGKIHSTAVTMTKF
SVVILVLVMAMICFFRGDNGMARFLLLIISLAITLTLFTFMSPIKRCAAT
RRPSIVEIAGPAPIYVPDVLKDNGIRTSSVRPSAAAFGGYGSDSVSEYDS
SQYSVNSVEA*

RE44586.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11210-PA 760 CG11210-PA 1..760 1..760 3943 100 Plus