BDGP Sequence Production Resources |
Search the DGRC for RE44620
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 446 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13760-RC |
Protein status: | RE44620.pep: gold |
Sequenced Size: | 1541 |
Gene | Date | Evidence |
---|---|---|
CG13760 | 2008-04-29 | Release 5.5 accounting |
CG13760 | 2008-04-29 | Picked prior to 5.5 |
CG13760 | 2008-08-15 | Release 5.9 accounting |
CG13760 | 2008-12-18 | 5.12 accounting |
1541 bp assembled on 2007-11-08
GenBank Submission: BT031159
> RE44620.complete ATTTTAAATTTATACCAATTGCCAGTAGTTATTTAGTCTTAAAATTGCAG CCGACAGTTGGCATTCCGCAGACAGCTGCACCTGGCCACACTGGCCCAAG CTGTTAGACCAAAACATTCCCAGTTCAGTTTCCAATTGGACGCCAGGATC AAAGGAGCGCAGCCGCGGGCACAGGAGCACGCGAAGCACACGGAGCCAAG GACTCGAGGACCCGAGGAGCACAAGAAGCCAAGAAGAGCCCAGCTGCTGG CCAGAATGAACGGACTGCCGCCGAGCAAGCACTACAACCTGACGCACTAC CAGCAGCGCTACAACTGGGACTGCGGTCTGTCCTGCATCATTATGATCCT GTCGGCGCAGCAAAGGGAACAGCTTCTTGGGAACTTTGATGCCGTGTGCG GCGAGGAGGGATTTGGCTCGAGCACCTGGACCATCGACCTGTGCTATCTG CTGATGCGCTACCAGGTGCGCCACGAGTACTTCACCCAAACGCTCGGGAT CGATCCCAACTACGCGCAGCACACGTACTACTCCAAGATCATCGACAAGG ACGAACGGCGCGTGACGCGCAAGTTCAAGGACGCCCGGGCCCATGGACTG CGCGTTGAACAGCGCACCGTGGACATGGAGGTCATTCTGCGGCATTTGGC CCGCCACGGACCCGTCATCCTGCTGACCAACGCCTCGCTGCTCACGTGCG AGGTGTGCAAGCGCAATGTCCTAGAGAAGTTCGGCTGTTTTCATATACCC TGCATTGCTCAAAATACACGCCTCCATGGACCCAAAAGGTATGCCGGACA CTATGTGGTGCTCTGCGGATATGACATGGCCGCCCAGAAGCTCTTCTACC ACAATCCCGAGGTCCACGATGGCCACATTTGTCGCTGCCTCATCGAGTCC ATGGACACGGCCCGACGCGCCTACGGCACGGACGAGGACATCATTTTCAT ATACGAGAAGAAGGAAACTAGGGAGTAGTAGATGGATAAACCAGCGGAAC AGATGAACAAATGAACAGATGAATTGATGAACAGATGAACAGAAGTACCT GCCGTCGCCAGGTTGCCAGGTGATGAGAACGGATGATTGGAATCTGCGCT TGTGATATTAGGACTTTAGGAGGAGACCTTGTAGGGGGGGACTTCGAGTG GGAGGTAAGAGAAAAAGCTGTCTGGTTAACTTTGGCACAACAGTGTACTT TATTTAGGTATTGTTAGCAGTTGGTCCCCATACAAAAAAAAACAATTACA AAATTATATTTATGTAAACGTGCCAGGCAGCGTCTACTCGTACATTATAG AGGCGTTCCATTGACGCTCCAAAAACCGTCGACGGAAAGTCCGAAAATCC AATGTTATTTCATAGTTATGTTTAAACACAGAACAATAGTAATTGTTCCC TAGCTTTAACTTTCCGTTAAACGCCCCCCAACTAATTTCCATATTTGTAG TACGAAAACATTCCAATAACGATTATGCAATGTATGTATATGTAGAAAAT AAATGAGATTATTGTTCCAAATGCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13760-RC | 1524 | CG13760-RC | 2..1522 | 3..1523 | 7605 | 100 | Plus |
CG13760.a | 1470 | CG13760.a | 733..1468 | 788..1523 | 3680 | 100 | Plus |
CG13760.a | 1470 | CG13760.a | 2..733 | 3..734 | 3660 | 100 | Plus |
CG13759.b | 1043 | CG13759.b | 952..1043 | 1523..1432 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2477543..2478200 | 1523..875 | 3025 | 98 | Minus |
chrX | 22417052 | chrX | 2478801..2479201 | 468..61 | 1820 | 97.5 | Minus |
chrX | 22417052 | chrX | 2478473..2478745 | 734..462 | 1350 | 99.6 | Minus |
chrX | 22417052 | chrX | 2478268..2478408 | 874..734 | 675 | 98.6 | Minus |
chrX | 22417052 | chrX | 2479446..2479493 | 50..3 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 2583747..2584395 | 1523..875 | 3245 | 100 | Minus |
X | 23542271 | X | 2584995..2585414 | 468..49 | 2100 | 100 | Minus |
X | 23542271 | X | 2584667..2584939 | 734..462 | 1365 | 100 | Minus |
X | 23542271 | X | 2584463..2584603 | 874..734 | 705 | 100 | Minus |
X | 23542271 | X | 2585651..2585698 | 50..3 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 2591845..2592493 | 1523..875 | 3245 | 100 | Minus |
X | 23527363 | X | 2593093..2593512 | 468..49 | 2100 | 100 | Minus |
X | 23527363 | X | 2592765..2593037 | 734..462 | 1365 | 100 | Minus |
X | 23527363 | X | 2592561..2592701 | 874..734 | 705 | 100 | Minus |
X | 23527363 | X | 2593749..2593796 | 50..3 | 240 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2477541..2478200 | 875..1525 | 91 | <- | Minus |
chrX | 2478268..2478407 | 735..874 | 98 | <- | Minus |
chrX | 2478473..2478741 | 466..734 | 99 | <- | Minus |
chrX | 2478804..2479207 | 51..465 | 96 | <- | Minus |
chrX | 2479446..2479494 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RB | 1..479 | 256..734 | 100 | == | Plus |
CG13760-RB | 480..669 | 789..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RC | 1..723 | 256..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RC | 1..723 | 256..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RB | 1..479 | 256..734 | 100 | == | Plus |
CG13760-RB | 480..669 | 789..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RC | 1..723 | 256..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RB | 2..733 | 3..734 | 100 | == | Plus |
CG13760-RB | 734..923 | 789..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RC | 2..1524 | 3..1525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RC | 2..1524 | 3..1525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RB | 2..733 | 3..734 | 100 | == | Plus |
CG13760-RB | 734..923 | 789..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13760-RC | 2..1524 | 3..1525 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2583745..2584395 | 875..1525 | 99 | <- | Minus |
X | 2584463..2584602 | 735..874 | 100 | <- | Minus |
X | 2584667..2584935 | 466..734 | 100 | <- | Minus |
X | 2584998..2585412 | 51..465 | 100 | <- | Minus |
X | 2585651..2585699 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2583745..2584395 | 875..1525 | 99 | <- | Minus |
X | 2584463..2584602 | 735..874 | 100 | <- | Minus |
X | 2584667..2584935 | 466..734 | 100 | <- | Minus |
X | 2584998..2585412 | 51..465 | 100 | <- | Minus |
X | 2585651..2585699 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2583745..2584395 | 875..1525 | 99 | <- | Minus |
X | 2584463..2584602 | 735..874 | 100 | <- | Minus |
X | 2584667..2584935 | 466..734 | 100 | <- | Minus |
X | 2584998..2585412 | 51..465 | 100 | <- | Minus |
X | 2585651..2585699 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2478700..2478968 | 466..734 | 100 | <- | Minus |
arm_X | 2477778..2478428 | 875..1525 | 99 | <- | Minus |
arm_X | 2478496..2478635 | 735..874 | 100 | <- | Minus |
arm_X | 2479031..2479445 | 51..465 | 100 | <- | Minus |
arm_X | 2479684..2479732 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2591843..2592493 | 875..1525 | 99 | <- | Minus |
X | 2592561..2592700 | 735..874 | 100 | <- | Minus |
X | 2592765..2593033 | 466..734 | 100 | <- | Minus |
X | 2593096..2593510 | 51..465 | 100 | <- | Minus |
X | 2593749..2593797 | 1..50 | 98 | Minus |
Translation from 255 to 977
> RE44620.pep MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGE EGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDE RRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEV CKRNVLEKFGCFHIPCIAQNTRLHGPKRYAGHYVVLCGYDMAAQKLFYHN PEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21945-PA | 223 | GF21945-PA | 1..218 | 1..236 | 1094 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12608-PA | 222 | GG12608-PA | 1..222 | 1..240 | 1153 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12747-PA | 226 | GH12747-PA | 1..217 | 1..235 | 993 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13760-PC | 240 | CG13760-PC | 1..240 | 1..240 | 1313 | 100 | Plus |
CG13760-PD | 222 | CG13760-PD | 1..222 | 1..240 | 1177 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15891-PA | 222 | GI15891-PA | 1..222 | 1..240 | 843 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14445-PA | 222 | GL14445-PA | 1..222 | 1..240 | 1059 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12510-PA | 222 | GA12510-PA | 1..222 | 1..240 | 1059 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18874-PA | 305 | GM18874-PA | 1..42 | 30..71 | 229 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16361-PA | 222 | GD16361-PA | 1..222 | 1..240 | 1166 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16638-PA | 222 | GJ16638-PA | 1..222 | 1..240 | 894 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24912-PA | 227 | GK24912-PA | 1..220 | 1..238 | 1059 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16939-PA | 240 | GE16939-PA | 1..240 | 1..240 | 1268 | 96.7 | Plus |
Translation from 255 to 977
> RE44620.hyp MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGE EGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDE RRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEV CKRNVLEKFGCFHIPCIAQNTRLHGPKRYAGHYVVLCGYDMAAQKLFYHN PEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE*