Clone RE44620 Report

Search the DGRC for RE44620

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:446
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG13760-RC
Protein status:RE44620.pep: gold
Sequenced Size:1541

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13760 2008-04-29 Release 5.5 accounting
CG13760 2008-04-29 Picked prior to 5.5
CG13760 2008-08-15 Release 5.9 accounting
CG13760 2008-12-18 5.12 accounting

Clone Sequence Records

RE44620.complete Sequence

1541 bp assembled on 2007-11-08

GenBank Submission: BT031159

> RE44620.complete
ATTTTAAATTTATACCAATTGCCAGTAGTTATTTAGTCTTAAAATTGCAG
CCGACAGTTGGCATTCCGCAGACAGCTGCACCTGGCCACACTGGCCCAAG
CTGTTAGACCAAAACATTCCCAGTTCAGTTTCCAATTGGACGCCAGGATC
AAAGGAGCGCAGCCGCGGGCACAGGAGCACGCGAAGCACACGGAGCCAAG
GACTCGAGGACCCGAGGAGCACAAGAAGCCAAGAAGAGCCCAGCTGCTGG
CCAGAATGAACGGACTGCCGCCGAGCAAGCACTACAACCTGACGCACTAC
CAGCAGCGCTACAACTGGGACTGCGGTCTGTCCTGCATCATTATGATCCT
GTCGGCGCAGCAAAGGGAACAGCTTCTTGGGAACTTTGATGCCGTGTGCG
GCGAGGAGGGATTTGGCTCGAGCACCTGGACCATCGACCTGTGCTATCTG
CTGATGCGCTACCAGGTGCGCCACGAGTACTTCACCCAAACGCTCGGGAT
CGATCCCAACTACGCGCAGCACACGTACTACTCCAAGATCATCGACAAGG
ACGAACGGCGCGTGACGCGCAAGTTCAAGGACGCCCGGGCCCATGGACTG
CGCGTTGAACAGCGCACCGTGGACATGGAGGTCATTCTGCGGCATTTGGC
CCGCCACGGACCCGTCATCCTGCTGACCAACGCCTCGCTGCTCACGTGCG
AGGTGTGCAAGCGCAATGTCCTAGAGAAGTTCGGCTGTTTTCATATACCC
TGCATTGCTCAAAATACACGCCTCCATGGACCCAAAAGGTATGCCGGACA
CTATGTGGTGCTCTGCGGATATGACATGGCCGCCCAGAAGCTCTTCTACC
ACAATCCCGAGGTCCACGATGGCCACATTTGTCGCTGCCTCATCGAGTCC
ATGGACACGGCCCGACGCGCCTACGGCACGGACGAGGACATCATTTTCAT
ATACGAGAAGAAGGAAACTAGGGAGTAGTAGATGGATAAACCAGCGGAAC
AGATGAACAAATGAACAGATGAATTGATGAACAGATGAACAGAAGTACCT
GCCGTCGCCAGGTTGCCAGGTGATGAGAACGGATGATTGGAATCTGCGCT
TGTGATATTAGGACTTTAGGAGGAGACCTTGTAGGGGGGGACTTCGAGTG
GGAGGTAAGAGAAAAAGCTGTCTGGTTAACTTTGGCACAACAGTGTACTT
TATTTAGGTATTGTTAGCAGTTGGTCCCCATACAAAAAAAAACAATTACA
AAATTATATTTATGTAAACGTGCCAGGCAGCGTCTACTCGTACATTATAG
AGGCGTTCCATTGACGCTCCAAAAACCGTCGACGGAAAGTCCGAAAATCC
AATGTTATTTCATAGTTATGTTTAAACACAGAACAATAGTAATTGTTCCC
TAGCTTTAACTTTCCGTTAAACGCCCCCCAACTAATTTCCATATTTGTAG
TACGAAAACATTCCAATAACGATTATGCAATGTATGTATATGTAGAAAAT
AAATGAGATTATTGTTCCAAATGCGAAAAAAAAAAAAAAAA

RE44620.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13760-RC 1524 CG13760-RC 2..1522 3..1523 7605 100 Plus
CG13760.a 1470 CG13760.a 733..1468 788..1523 3680 100 Plus
CG13760.a 1470 CG13760.a 2..733 3..734 3660 100 Plus
CG13759.b 1043 CG13759.b 952..1043 1523..1432 460 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2477543..2478200 1523..875 3025 98 Minus
chrX 22417052 chrX 2478801..2479201 468..61 1820 97.5 Minus
chrX 22417052 chrX 2478473..2478745 734..462 1350 99.6 Minus
chrX 22417052 chrX 2478268..2478408 874..734 675 98.6 Minus
chrX 22417052 chrX 2479446..2479493 50..3 240 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2583747..2584395 1523..875 3245 100 Minus
X 23542271 X 2584995..2585414 468..49 2100 100 Minus
X 23542271 X 2584667..2584939 734..462 1365 100 Minus
X 23542271 X 2584463..2584603 874..734 705 100 Minus
X 23542271 X 2585651..2585698 50..3 240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2591845..2592493 1523..875 3245 100 Minus
X 23527363 X 2593093..2593512 468..49 2100 100 Minus
X 23527363 X 2592765..2593037 734..462 1365 100 Minus
X 23527363 X 2592561..2592701 874..734 705 100 Minus
X 23527363 X 2593749..2593796 50..3 240 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:39:59 has no hits.

RE44620.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:40:57 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2477541..2478200 875..1525 91 <- Minus
chrX 2478268..2478407 735..874 98 <- Minus
chrX 2478473..2478741 466..734 99 <- Minus
chrX 2478804..2479207 51..465 96 <- Minus
chrX 2479446..2479494 1..50 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:17:43 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RB 1..479 256..734 100 == Plus
CG13760-RB 480..669 789..978 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:33 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 1..723 256..978 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:16:09 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 1..723 256..978 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:50 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RB 1..479 256..734 100 == Plus
CG13760-RB 480..669 789..978 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:05 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 1..723 256..978 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:01:58 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RB 2..733 3..734 100 == Plus
CG13760-RB 734..923 789..978 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:33 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 2..1524 3..1525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:16:09 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 2..1524 3..1525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:50 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RB 2..733 3..734 100 == Plus
CG13760-RB 734..923 789..978 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:05 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
CG13760-RC 2..1524 3..1525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:57 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
X 2583745..2584395 875..1525 99 <- Minus
X 2584463..2584602 735..874 100 <- Minus
X 2584667..2584935 466..734 100 <- Minus
X 2584998..2585412 51..465 100 <- Minus
X 2585651..2585699 1..50 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:57 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
X 2583745..2584395 875..1525 99 <- Minus
X 2584463..2584602 735..874 100 <- Minus
X 2584667..2584935 466..734 100 <- Minus
X 2584998..2585412 51..465 100 <- Minus
X 2585651..2585699 1..50 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:57 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
X 2583745..2584395 875..1525 99 <- Minus
X 2584463..2584602 735..874 100 <- Minus
X 2584667..2584935 466..734 100 <- Minus
X 2584998..2585412 51..465 100 <- Minus
X 2585651..2585699 1..50 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:16:09 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2478700..2478968 466..734 100 <- Minus
arm_X 2477778..2478428 875..1525 99 <- Minus
arm_X 2478496..2478635 735..874 100 <- Minus
arm_X 2479031..2479445 51..465 100 <- Minus
arm_X 2479684..2479732 1..50 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:49 Download gff for RE44620.complete
Subject Subject Range Query Range Percent Splice Strand
X 2591843..2592493 875..1525 99 <- Minus
X 2592561..2592700 735..874 100 <- Minus
X 2592765..2593033 466..734 100 <- Minus
X 2593096..2593510 51..465 100 <- Minus
X 2593749..2593797 1..50 98   Minus

RE44620.pep Sequence

Translation from 255 to 977

> RE44620.pep
MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGE
EGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDE
RRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEV
CKRNVLEKFGCFHIPCIAQNTRLHGPKRYAGHYVVLCGYDMAAQKLFYHN
PEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE*

RE44620.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21945-PA 223 GF21945-PA 1..218 1..236 1094 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12608-PA 222 GG12608-PA 1..222 1..240 1153 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12747-PA 226 GH12747-PA 1..217 1..235 993 77.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13760-PC 240 CG13760-PC 1..240 1..240 1313 100 Plus
CG13760-PD 222 CG13760-PD 1..222 1..240 1177 92.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15891-PA 222 GI15891-PA 1..222 1..240 843 60.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14445-PA 222 GL14445-PA 1..222 1..240 1059 80.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12510-PA 222 GA12510-PA 1..222 1..240 1059 80.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18874-PA 305 GM18874-PA 1..42 30..71 229 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16361-PA 222 GD16361-PA 1..222 1..240 1166 92.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16638-PA 222 GJ16638-PA 1..222 1..240 894 66.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24912-PA 227 GK24912-PA 1..220 1..238 1059 81.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16939-PA 240 GE16939-PA 1..240 1..240 1268 96.7 Plus

RE44620.hyp Sequence

Translation from 255 to 977

> RE44620.hyp
MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGE
EGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDE
RRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEV
CKRNVLEKFGCFHIPCIAQNTRLHGPKRYAGHYVVLCGYDMAAQKLFYHN
PEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE*

RE44620.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13760-PC 240 CG13760-PC 1..240 1..240 1313 100 Plus
CG13760-PD 222 CG13760-PD 1..222 1..240 1177 92.5 Plus