BDGP Sequence Production Resources |
Search the DGRC for RE44872
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 448 |
Well: | 72 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ImpL1-RC |
Protein status: | RE44872.pep: gold |
Sequenced Size: | 1173 |
Gene | Date | Evidence |
---|---|---|
CG10717 | 2004-03-31 | Blastp of sequenced clone |
ImpL1 | 2008-04-29 | Release 5.5 accounting |
ImpL1 | 2008-08-15 | Release 5.9 accounting |
ImpL1 | 2008-12-18 | 5.12 accounting |
1173 bp (1173 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012464
> RE44872.complete ATCAGTTGTTGTGGAGTCGAGCAGCTGACCAGATCAACATGAGGCCATAC CAAGTAGTTTGCATCGTAGTAGCAGCTCTGCTGCTTTTGGAGGCGATTCC CGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACTATGAAA AGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGCTCCACG GATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTACTATGT AAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGAAGCGTC TAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGTGAGTCG GGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAGTGCCGC GCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATGAACTGT ACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTCTACAAC AAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTGGACGGA CTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTGCCTATG CCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCCATCGTG GAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGAACAACA CAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAAATAAGA ACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAGGATGACCAAAAGGAA AACAAGCAGAAGGATCCCCTTTCCCTAATGCCACAGAAGAAAGTGGAATC CACCCAGAAGCCAGTGCCAGTTCCTATTCAAGTAGCAGTTCCAAAACCAG TTTCAGTTTTGGAGCCTGCAAAGACGACCGAGGACATCGCTATGCCGCCT ATGCCACTGAAGGACACTCCCACGCCCAAACCTCTGGAGATCGCGCCCCT TCACCAGCAGACCCAACCCAAGGGCAAGGACATTGATAGGCTCAAGTACC AAGTAGCTTAGAAAGCAATGGCTACACAAATCTCACCTAATTATAGTATT TATTTAATTTATTACAACAAATAAAATTCTAAACAACGATAATCATCTAT ATTTGAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ImpL1-RC | 1274 | ImpL1-RC | 14..1178 | 1..1165 | 5795 | 99.8 | Plus |
ImpL1-RA | 1431 | ImpL1-RA | 168..1335 | 1..1165 | 5740 | 99.5 | Plus |
ImpL1-RB | 1232 | ImpL1-RB | 143..1231 | 68..1156 | 5445 | 100 | Plus |
ImpL1-RB | 1232 | ImpL1-RB | 1..66 | 4..69 | 330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 703..782 | 1154..1072 | 118 | 66.7 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 660..778 | 117 | 56.8 | Plus |
micropia | 5461 | micropia DMDM11 5461bp | 3942..3996 | 544..492 | 116 | 72.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 13372994..13373062 | 1..69 | 100 | -> | Plus |
chr3L | 13373141..13373735 | 70..664 | 100 | == | Plus |
chr3L | 13373886..13374227 | 815..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RA | 1..1026 | 39..1061 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RC | 1..1023 | 39..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RC | 1..1023 | 39..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RA | 1..1026 | 39..1061 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RC | 1..1023 | 39..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RA | 1..1159 | 1..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RC | 11..1165 | 1..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RC | 3..1157 | 1..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RA | 1..1159 | 1..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ImpL1-RC | 3..1157 | 1..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13382767..13382835 | 1..69 | 100 | -> | Plus |
3L | 13382914..13384000 | 70..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13382767..13382835 | 1..69 | 100 | -> | Plus |
3L | 13382914..13384000 | 70..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13382767..13382835 | 1..69 | 100 | -> | Plus |
3L | 13382914..13384000 | 70..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 13375867..13375935 | 1..69 | 100 | -> | Plus |
arm_3L | 13376014..13377100 | 70..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13376014..13377100 | 70..1157 | 99 | Plus | |
3L | 13375867..13375935 | 1..69 | 100 | -> | Plus |
Translation from 2 to 1060
> RE44872.hyp QLLWSRAADQINMRPYQVVCIVVAALLLLEAIPADAKRRKHKGSDHHYEK SDPHKTKTKTKWSSSTDLAGNTPISTEEHGYYVKRTFAAPGEIGAAQKRL SPPYLAIPIAWFSCESGQKNCQSSNSAAINSAAQSLSEGYLCDDDCDELY EPICGRTTSEVAVFYNKCKLGVAKCRSHGLWTDFAYAECQAKYPQETAYA DKKFRSSPYFRDAAIVEQLKLEEEKRKQEEEQHKLEKEQKKKEKAEKNKN EKDSSESSEEKDDQKENKQKDPLSLMPQKKVESTQKPVPVPIQVAVPKPV SVLEPAKTTEDIAMPPMPLKDTPTPKPLEIAPLHQQTQPKGKDIDRLKYQ VA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ImpL1-PC | 340 | CG10717-PC | 1..340 | 13..352 | 1793 | 100 | Plus |
ImpL1-PA | 341 | CG10717-PA | 1..341 | 13..352 | 1781 | 99.7 | Plus |
ImpL1-PB | 366 | CG10717-PB | 1..366 | 13..352 | 1756 | 92.9 | Plus |
Translation from 38 to 1060
> RE44872.pep MRPYQVVCIVVAALLLLEAIPADAKRRKHKGSDHHYEKSDPHKTKTKTKW SSSTDLAGNTPISTEEHGYYVKRTFAAPGEIGAAQKRLSPPYLAIPIAWF SCESGQKNCQSSNSAAINSAAQSLSEGYLCDDDCDELYEPICGRTTSEVA VFYNKCKLGVAKCRSHGLWTDFAYAECQAKYPQETAYADKKFRSSPYFRD AAIVEQLKLEEEKRKQEEEQHKLEKEQKKKEKAEKNKNEKDSSESSEEKD DQKENKQKDPLSLMPQKKVESTQKPVPVPIQVAVPKPVSVLEPAKTTEDI AMPPMPLKDTPTPKPLEIAPLHQQTQPKGKDIDRLKYQVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24041-PA | 356 | GF24041-PA | 1..356 | 1..340 | 891 | 65.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15638-PA | 343 | GG15638-PA | 1..343 | 1..340 | 1345 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17161-PA | 320 | GH17161-PA | 1..278 | 1..313 | 766 | 51.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ImpL1-PC | 340 | CG10717-PC | 1..340 | 1..340 | 1793 | 100 | Plus |
ImpL1-PA | 341 | CG10717-PA | 1..341 | 1..340 | 1781 | 99.7 | Plus |
ImpL1-PB | 366 | CG10717-PB | 1..366 | 1..340 | 1756 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11776-PA | 362 | GI11776-PA | 1..292 | 1..310 | 696 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15712-PA | 323 | GL15712-PA | 44..323 | 42..340 | 848 | 59.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10517-PA | 323 | GA10517-PA | 1..323 | 1..340 | 883 | 60.6 | Plus |
Dpse\GA29257-PA | 304 | GA29257-PA | 1..197 | 1..208 | 658 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25416-PA | 342 | GM25416-PA | 1..342 | 1..340 | 1383 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14446-PA | 342 | GD14446-PA | 1..342 | 1..340 | 1377 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13478-PA | 333 | GJ13478-PA | 1..277 | 1..308 | 756 | 54.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17441-PA | 324 | GK17441-PA | 1..277 | 1..319 | 667 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21966-PA | 348 | GE21966-PA | 1..348 | 1..340 | 1409 | 88.8 | Plus |