Clone RE44883 Report

Search the DGRC for RE44883

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:448
Well:83
Vector:pFlc-1
Associated Gene/TranscriptSpf45-RB
Protein status:RE44883.pep: gold
Sequenced Size:1344

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17540 2004-03-31 Blastp of sequenced clone
Spf45 2008-04-29 Release 5.5 accounting
Spf45 2008-08-15 Release 5.9 accounting
Spf45 2008-12-18 5.12 accounting

Clone Sequence Records

RE44883.complete Sequence

1344 bp (1344 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012461

> RE44883.complete
GTCGTCAATATCTTAAGGTGGTGCTAGTATTGATATATTTGTTAATGGAT
TTGTATGACGGCATTGATACGAGGGCTCGATCTAGCCAGATTGATGGATG
GTCTTCGGGAATAAAAATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCAATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTG
TATCCAAACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGG
ATAAACAGGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCC
AAATGAATATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATC
GAGCAGGCGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGT
AAACGTGGACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGC
CCCTAACCTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACA
TGTACTTGCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATC
GCTCCCCCTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGC
CACTAATACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGG
CAAAATATGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGC
ATGGCCATAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGAT
CATACACGAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTT
CTATTGGCTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCT
CCCCAGATGGTAGACACGGCGGCTGAGAGTGGTGACATCGGATACAGCAT
TACGGAGATTATGAAATCACCAAGCAAGGTTGTTCTTCTACGCAACATGG
TAGGACCCGGGGACGTTGACGAAGAATTGGAACCCGAGGTAAAAGACGAA
TGCAACACCAAGTACGGGGAAGTGAACAGTGTAATCATTCACGAATCGTT
CGGAACTGTGCCAGAAGATGCAGTTAAAATATTCGTAGAGTTTAGGCGGA
TCGAAAGTGCAATTAAAGCTGTAGTGGACCTTAATGGACGTTTTTTTGGA
GGACGTCAAGTGCGAGCGGGGTTTTACAACTATGATAAGTTTAAATGTTT
CCAATTACATTAGAACTAATACAACTAAGATTGCATTTATTTTTTTCTAA
GTTATTGATAGCCTAAAAAATGTTTACCGCACAGAACTAGTCTTGTAAAT
TTCTATTAAAAACTACTTTCTATCAAACAAAAAAAAAAAAAAAA

RE44883.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1531 Spf45-RB 107..1439 1..1333 6650 99.9 Plus
Spf45-RA 1574 Spf45-RA 311..1482 162..1333 5860 100 Plus
Spf45-RC 1546 Spf45-RC 283..1454 162..1333 5860 100 Plus
Spf45-RA 1574 Spf45-RA 107..267 1..161 790 99.3 Plus
Spf45-RC 1546 Spf45-RC 24..184 1..161 790 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22958380..22959336 1118..162 4755 99.8 Minus
chr2L 23010047 chr2L 22958109..22958320 1328..1117 1060 100 Minus
chr2L 23010047 chr2L 22959435..22959595 161..1 790 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068101 1118..162 4785 100 Minus
2L 23513712 2L 23066869..23067085 1333..1117 1085 100 Minus
2L 23513712 2L 23068200..23068360 161..1 790 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068101 1118..162 4785 100 Minus
2L 23513712 2L 23066869..23067085 1333..1117 1085 100 Minus
2L 23513712 2L 23068200..23068360 161..1 790 99.3 Minus
Blast to na_te.dros performed on 2019-03-15 22:44:28 has no hits.

RE44883.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:45:11 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22959435..22959595 1..161 99   Minus
chr2L 22958109..22958318 1119..1328 100 <- Minus
chr2L 22958380..22959336 162..1118 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:17:57 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 1..1116 98..1213 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:58 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 1..1116 98..1213 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:31:40 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 1..1116 98..1213 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:46 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 1..1116 98..1213 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:12 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 1..1116 98..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:51 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 88..1415 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:58 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 88..1415 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:31:40 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 27..1354 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:46 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 88..1415 1..1328 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:12 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 27..1354 1..1328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:45:11 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23068200..23068360 1..161 99   Minus
2L 23066874..23067083 1119..1328 100 <- Minus
2L 23067145..23068101 162..1118 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:45:11 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23068200..23068360 1..161 99   Minus
2L 23066874..23067083 1119..1328 100 <- Minus
2L 23067145..23068101 162..1118 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:45:11 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23068200..23068360 1..161 99   Minus
2L 23066874..23067083 1119..1328 100 <- Minus
2L 23067145..23068101 162..1118 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:31:40 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959606..22959815 1119..1328 100 <- Minus
arm_2L 22959877..22960833 162..1118 100 <- Minus
arm_2L 22960932..22961092 1..161 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:11 Download gff for RE44883.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23066874..23067083 1119..1328 100 <- Minus
2L 23067145..23068101 162..1118 100 <- Minus
2L 23068200..23068360 1..161 99   Minus

RE44883.pep Sequence

Translation from 97 to 1212

> RE44883.pep
MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE
RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD
RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT
IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ
GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP
PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD
ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF
GGRQVRAGFYNYDKFKCFQLH*

RE44883.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15900-PA 401 GF15900-PA 40..401 6..371 1076 66 Plus
Dana\GF25032-PA 643 GF25032-PA 542..636 276..365 198 47.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21408-PA 406 GG21408-PA 54..406 22..371 1600 87 Plus
Dere\GG11065-PA 200 GG11065-PA 1..200 172..371 958 92.5 Plus
Dere\GG14596-PA 731 GG14596-PA 630..724 276..365 204 47.9 Plus
Dere\GG20057-PA 440 GG20057-PA 338..434 274..365 151 37.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13625-PA 451 GH13625-PA 71..451 32..371 1057 63.5 Plus
Dgri\GH15204-PA 643 GH15204-PA 542..636 276..365 200 47.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PB 371 CG17540-PB 1..371 1..371 1938 100 Plus
Spf45-PA 403 CG17540-PA 38..403 6..371 1819 95.9 Plus
Spf45-PC 363 CG17540-PC 14..363 22..371 1818 99.7 Plus
hfp-PJ 545 CG12085-PJ 444..538 276..365 192 47.9 Plus
hfp-PI 545 CG12085-PI 444..538 276..365 192 47.9 Plus
hfp-PH 545 CG12085-PH 444..538 276..365 192 47.9 Plus
hfp-PG 545 CG12085-PG 444..538 276..365 192 47.9 Plus
hfp-PF 545 CG12085-PF 444..538 276..365 192 47.9 Plus
hfp-PE 545 CG12085-PE 444..538 276..365 192 47.9 Plus
hfp-PB 545 CG12085-PB 444..538 276..365 192 47.9 Plus
hfp-PD 545 CG12085-PD 444..538 276..365 192 47.9 Plus
hfp-PC 545 CG12085-PC 444..538 276..365 192 47.9 Plus
hfp-PA 637 CG12085-PA 536..630 276..365 192 47.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11727-PA 438 GI11727-PA 60..438 20..371 1038 61.3 Plus
Dmoj\GI16722-PA 616 GI16722-PA 515..609 276..365 203 47.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21138-PA 418 GL21138-PA 73..418 36..371 1104 68.4 Plus
Dper\GL22585-PA 653 GL22585-PA 552..646 276..365 199 47.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29081-PA 418 GA29081-PA 73..418 36..371 1104 68.4 Plus
Dpse\GA11385-PA 653 GA11385-PA 552..646 276..365 199 47.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11754-PA 400 GM11754-PA 55..400 23..371 1683 92 Plus
Dsec\GM11755-PA 450 GM11755-PA 1..169 172..349 712 80.3 Plus
Dsec\GM14211-PA 616 GM14211-PA 515..609 276..365 202 47.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17712-PA 403 GD17712-PA 55..403 23..371 1730 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13092-PA 432 GJ13092-PA 60..432 20..371 1050 63.4 Plus
Dvir\GJ12466-PA 645 GJ12466-PA 544..638 276..365 202 47.9 Plus
Dvir\GJ20975-PA 428 GJ20975-PA 317..428 265..371 153 36.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23713-PA 443 GK23713-PA 66..443 23..371 1105 65.1 Plus
Dwil\GK17204-PA 631 GK17204-PA 530..624 276..365 205 49 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10978-PA 367 GE10978-PA 22..367 23..371 1555 85.1 Plus
Dyak\GE20955-PA 637 GE20955-PA 536..630 276..365 204 47.9 Plus
Dyak\GE11595-PA 437 GE11595-PA 335..431 274..365 155 39.8 Plus

RE44883.hyp Sequence

Translation from 97 to 1212

> RE44883.hyp
MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE
RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD
RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT
IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ
GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP
PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD
ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF
GGRQVRAGFYNYDKFKCFQLH*

RE44883.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PB 371 CG17540-PB 1..371 1..371 1938 100 Plus
Spf45-PA 403 CG17540-PA 38..403 6..371 1819 95.9 Plus
Spf45-PC 363 CG17540-PC 14..363 22..371 1818 99.7 Plus
pUf68-PJ 545 CG12085-PJ 444..538 276..365 192 47.9 Plus
pUf68-PI 545 CG12085-PI 444..538 276..365 192 47.9 Plus