BDGP Sequence Production Resources |
Search the DGRC for RE44883
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 448 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Spf45-RB |
Protein status: | RE44883.pep: gold |
Sequenced Size: | 1344 |
Gene | Date | Evidence |
---|---|---|
CG17540 | 2004-03-31 | Blastp of sequenced clone |
Spf45 | 2008-04-29 | Release 5.5 accounting |
Spf45 | 2008-08-15 | Release 5.9 accounting |
Spf45 | 2008-12-18 | 5.12 accounting |
1344 bp (1344 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012461
> RE44883.complete GTCGTCAATATCTTAAGGTGGTGCTAGTATTGATATATTTGTTAATGGAT TTGTATGACGGCATTGATACGAGGGCTCGATCTAGCCAGATTGATGGATG GTCTTCGGGAATAAAAATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG TCAAAAAACCAATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTG TATCCAAACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGG ATAAACAGGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCC AAATGAATATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATC GAGCAGGCGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGT AAACGTGGACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGC CCCTAACCTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACA TGTACTTGCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATC GCTCCCCCTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGC CACTAATACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGG CAAAATATGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGC ATGGCCATAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGAT CATACACGAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTT CTATTGGCTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCT CCCCAGATGGTAGACACGGCGGCTGAGAGTGGTGACATCGGATACAGCAT TACGGAGATTATGAAATCACCAAGCAAGGTTGTTCTTCTACGCAACATGG TAGGACCCGGGGACGTTGACGAAGAATTGGAACCCGAGGTAAAAGACGAA TGCAACACCAAGTACGGGGAAGTGAACAGTGTAATCATTCACGAATCGTT CGGAACTGTGCCAGAAGATGCAGTTAAAATATTCGTAGAGTTTAGGCGGA TCGAAAGTGCAATTAAAGCTGTAGTGGACCTTAATGGACGTTTTTTTGGA GGACGTCAAGTGCGAGCGGGGTTTTACAACTATGATAAGTTTAAATGTTT CCAATTACATTAGAACTAATACAACTAAGATTGCATTTATTTTTTTCTAA GTTATTGATAGCCTAAAAAATGTTTACCGCACAGAACTAGTCTTGTAAAT TTCTATTAAAAACTACTTTCTATCAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spf45-RB | 1531 | Spf45-RB | 107..1439 | 1..1333 | 6650 | 99.9 | Plus |
Spf45-RA | 1574 | Spf45-RA | 311..1482 | 162..1333 | 5860 | 100 | Plus |
Spf45-RC | 1546 | Spf45-RC | 283..1454 | 162..1333 | 5860 | 100 | Plus |
Spf45-RA | 1574 | Spf45-RA | 107..267 | 1..161 | 790 | 99.3 | Plus |
Spf45-RC | 1546 | Spf45-RC | 24..184 | 1..161 | 790 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 22958380..22959336 | 1118..162 | 4755 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 22958109..22958320 | 1328..1117 | 1060 | 100 | Minus |
chr2L | 23010047 | chr2L | 22959435..22959595 | 161..1 | 790 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23067145..23068101 | 1118..162 | 4785 | 100 | Minus |
2L | 23513712 | 2L | 23066869..23067085 | 1333..1117 | 1085 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068360 | 161..1 | 790 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23067145..23068101 | 1118..162 | 4785 | 100 | Minus |
2L | 23513712 | 2L | 23066869..23067085 | 1333..1117 | 1085 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068360 | 161..1 | 790 | 99.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 22959435..22959595 | 1..161 | 99 | Minus | |
chr2L | 22958109..22958318 | 1119..1328 | 100 | <- | Minus |
chr2L | 22958380..22959336 | 162..1118 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 1..1116 | 98..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 1..1116 | 98..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 1..1116 | 98..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 1..1116 | 98..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 1..1116 | 98..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 88..1415 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 88..1415 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 27..1354 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 88..1415 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RB | 27..1354 | 1..1328 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23068200..23068360 | 1..161 | 99 | Minus | |
2L | 23066874..23067083 | 1119..1328 | 100 | <- | Minus |
2L | 23067145..23068101 | 162..1118 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23068200..23068360 | 1..161 | 99 | Minus | |
2L | 23066874..23067083 | 1119..1328 | 100 | <- | Minus |
2L | 23067145..23068101 | 162..1118 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23068200..23068360 | 1..161 | 99 | Minus | |
2L | 23066874..23067083 | 1119..1328 | 100 | <- | Minus |
2L | 23067145..23068101 | 162..1118 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 22959606..22959815 | 1119..1328 | 100 | <- | Minus |
arm_2L | 22959877..22960833 | 162..1118 | 100 | <- | Minus |
arm_2L | 22960932..22961092 | 1..161 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23066874..23067083 | 1119..1328 | 100 | <- | Minus |
2L | 23067145..23068101 | 162..1118 | 100 | <- | Minus |
2L | 23068200..23068360 | 1..161 | 99 | Minus |
Translation from 97 to 1212
> RE44883.pep MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF GGRQVRAGFYNYDKFKCFQLH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15900-PA | 401 | GF15900-PA | 40..401 | 6..371 | 1076 | 66 | Plus |
Dana\GF25032-PA | 643 | GF25032-PA | 542..636 | 276..365 | 198 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21408-PA | 406 | GG21408-PA | 54..406 | 22..371 | 1600 | 87 | Plus |
Dere\GG11065-PA | 200 | GG11065-PA | 1..200 | 172..371 | 958 | 92.5 | Plus |
Dere\GG14596-PA | 731 | GG14596-PA | 630..724 | 276..365 | 204 | 47.9 | Plus |
Dere\GG20057-PA | 440 | GG20057-PA | 338..434 | 274..365 | 151 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13625-PA | 451 | GH13625-PA | 71..451 | 32..371 | 1057 | 63.5 | Plus |
Dgri\GH15204-PA | 643 | GH15204-PA | 542..636 | 276..365 | 200 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spf45-PB | 371 | CG17540-PB | 1..371 | 1..371 | 1938 | 100 | Plus |
Spf45-PA | 403 | CG17540-PA | 38..403 | 6..371 | 1819 | 95.9 | Plus |
Spf45-PC | 363 | CG17540-PC | 14..363 | 22..371 | 1818 | 99.7 | Plus |
hfp-PJ | 545 | CG12085-PJ | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PI | 545 | CG12085-PI | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PH | 545 | CG12085-PH | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PG | 545 | CG12085-PG | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PF | 545 | CG12085-PF | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PE | 545 | CG12085-PE | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PB | 545 | CG12085-PB | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PD | 545 | CG12085-PD | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PC | 545 | CG12085-PC | 444..538 | 276..365 | 192 | 47.9 | Plus |
hfp-PA | 637 | CG12085-PA | 536..630 | 276..365 | 192 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11727-PA | 438 | GI11727-PA | 60..438 | 20..371 | 1038 | 61.3 | Plus |
Dmoj\GI16722-PA | 616 | GI16722-PA | 515..609 | 276..365 | 203 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21138-PA | 418 | GL21138-PA | 73..418 | 36..371 | 1104 | 68.4 | Plus |
Dper\GL22585-PA | 653 | GL22585-PA | 552..646 | 276..365 | 199 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA29081-PA | 418 | GA29081-PA | 73..418 | 36..371 | 1104 | 68.4 | Plus |
Dpse\GA11385-PA | 653 | GA11385-PA | 552..646 | 276..365 | 199 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11754-PA | 400 | GM11754-PA | 55..400 | 23..371 | 1683 | 92 | Plus |
Dsec\GM11755-PA | 450 | GM11755-PA | 1..169 | 172..349 | 712 | 80.3 | Plus |
Dsec\GM14211-PA | 616 | GM14211-PA | 515..609 | 276..365 | 202 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17712-PA | 403 | GD17712-PA | 55..403 | 23..371 | 1730 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13092-PA | 432 | GJ13092-PA | 60..432 | 20..371 | 1050 | 63.4 | Plus |
Dvir\GJ12466-PA | 645 | GJ12466-PA | 544..638 | 276..365 | 202 | 47.9 | Plus |
Dvir\GJ20975-PA | 428 | GJ20975-PA | 317..428 | 265..371 | 153 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23713-PA | 443 | GK23713-PA | 66..443 | 23..371 | 1105 | 65.1 | Plus |
Dwil\GK17204-PA | 631 | GK17204-PA | 530..624 | 276..365 | 205 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10978-PA | 367 | GE10978-PA | 22..367 | 23..371 | 1555 | 85.1 | Plus |
Dyak\GE20955-PA | 637 | GE20955-PA | 536..630 | 276..365 | 204 | 47.9 | Plus |
Dyak\GE11595-PA | 437 | GE11595-PA | 335..431 | 274..365 | 155 | 39.8 | Plus |
Translation from 97 to 1212
> RE44883.hyp MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF GGRQVRAGFYNYDKFKCFQLH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spf45-PB | 371 | CG17540-PB | 1..371 | 1..371 | 1938 | 100 | Plus |
Spf45-PA | 403 | CG17540-PA | 38..403 | 6..371 | 1819 | 95.9 | Plus |
Spf45-PC | 363 | CG17540-PC | 14..363 | 22..371 | 1818 | 99.7 | Plus |
pUf68-PJ | 545 | CG12085-PJ | 444..538 | 276..365 | 192 | 47.9 | Plus |
pUf68-PI | 545 | CG12085-PI | 444..538 | 276..365 | 192 | 47.9 | Plus |