BDGP Sequence Production Resources |
Search the DGRC for RE44908
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 449 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rrp40-RA |
Protein status: | RE44908.pep: gold |
Sequenced Size: | 857 |
Gene | Date | Evidence |
---|---|---|
CG31938 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31938 | 2008-04-29 | Release 5.5 accounting |
CG31938 | 2008-08-15 | Release 5.9 accounting |
CG31938 | 2008-12-18 | 5.12 accounting |
857 bp (857 high quality bases) assembled on 2005-08-04
GenBank Submission: BT023807
> RE44908.complete GCGGTGTTGGAAAGTCCTCGACTTGACCATATGTTTTGAAAGACACACGC GGATTTTTTGTTTGGAGTTTTCAAATCGTAAAAGCAACATTAAAATGAGC GCGACCAGCACAATAGTTATGCCCGGTGAGCGAATTGCGGCCATTGAGGA GCTGGCCAAGAGCAAGCGGGTGATACTCGGACCGGGACTGCGGCGTCTGG ATGACACGGTGGTGGCTAGCAAGGCGGGCCCACTTCGACACAAGGAACCC GGCACCTTCTGGGTGGACAACTACCAGAGAAGGTACATCCCGGCACGCGG GGATCTCATTCTGGGCATTGTGCGAGCCAAGGCGGGCGATCTGTACCGCG TGGACATCGGAGCAACGGACACAGCCTCCATATCGTATCTCGCCTTTGAG GCGGCCAGCAAGAAGAATCGCCCGGATCTGATCCCCGGTGATCTGATTTA CGCGAGAGTCCTGAATGCAAGCGCGGACATTGAACCGGAGCTGGTCTGCG TCAACTCGGTGGGCAAAAGTGGCAAACTGGGCGTCCTCACCGATGGATTC TTCTTCAAGTGCAGCCTGAATCTGGGAAGGATGCTGCTGCGGGAAAACTG CCCTGTTCTCGCCGCTCTTACCCGGGAACTGCCCTACGAGATCGCTGTGG GAGTCAACGGCAGGATATGGTTGAAGGCCCATTCCCTGAAAGAAACCGTG GCCCTCGCCAATGCCATTTCAGCGCTGGAGCAATCGGGATGTGCGGAAAT CGACAAAATATGTGGCAATCTCGGAGACTTCCTGCAGGCCTAGGATTAGT TCTTAGTTTACTTACTTTTATATAAAAAGAAATGGTTAGCCAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 1728556..1729393 | 4..841 | 4115 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1728738..1729578 | 4..844 | 4205 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1728738..1729578 | 4..844 | 4205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 1728553..1729393 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31938-RA | 1..699 | 95..793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp40-RA | 1..699 | 95..793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp40-RA | 1..699 | 95..793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31938-RA | 1..699 | 95..793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp40-RA | 1..699 | 95..793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31938-RA | 1..793 | 1..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp40-RA | 1..841 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp40-RA | 4..844 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31938-RA | 1..793 | 1..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp40-RA | 4..844 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1728735..1729575 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1728735..1729575 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1728735..1729575 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 1728735..1729575 | 1..841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1728735..1729575 | 1..841 | 99 | Plus |
Translation from 0 to 792
> RE44908.hyp QCWKVLDLTICFERHTRIFCLEFSNRKSNIKMSATSTIVMPGERIAAIEE LAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPARG DLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDLIY ARVLNASADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRENC PVLAALTRELPYEIAVGVNGRIWLKAHSLKETVALANAISALEQSGCAEI DKICGNLGDFLQA*
Translation from 94 to 792
> RE44908.pep MSATSTIVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHK EPGTFWVDNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLA FEAASKKNRPDLIPGDLIYARVLNASADIEPELVCVNSVGKSGKLGVLTD GFFFKCSLNLGRMLLRENCPVLAALTRELPYEIAVGVNGRIWLKAHSLKE TVALANAISALEQSGCAEIDKICGNLGDFLQA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14006-PA | 232 | GF14006-PA | 1..232 | 1..232 | 1064 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24804-PA | 232 | GG24804-PA | 1..231 | 1..231 | 1146 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH25200-PA | 232 | GH25200-PA | 1..232 | 1..232 | 1015 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rrp40-PB | 232 | CG31938-PB | 1..232 | 1..232 | 1176 | 100 | Plus |
Rrp40-PA | 232 | CG31938-PA | 1..232 | 1..232 | 1176 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17269-PA | 232 | GI17269-PA | 1..231 | 1..231 | 997 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19652-PA | 232 | GL19652-PA | 1..232 | 1..232 | 1022 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16580-PA | 232 | GA16580-PA | 1..232 | 1..232 | 1018 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16829-PA | 232 | GM16829-PA | 1..231 | 1..231 | 1177 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23107-PA | 232 | GD23107-PA | 1..231 | 1..231 | 1172 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22758-PA | 232 | GJ22758-PA | 1..232 | 1..232 | 1011 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20196-PA | 235 | GK20196-PA | 6..234 | 3..231 | 1031 | 81.7 | Plus |
Dwil\GK18349-PA | 235 | GK18349-PA | 6..234 | 3..231 | 1026 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17692-PA | 232 | GE17692-PA | 1..231 | 1..231 | 1166 | 96.1 | Plus |