Clone RE44923 Report

Search the DGRC for RE44923

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:449
Well:23
Vector:pFlc-1
Associated Gene/Transcriptsicily-RA
Protein status:RE44923.pep: gold
Preliminary Size:1005
Sequenced Size:1137

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15738 2002-01-01 Sim4 clustering to Release 2
CG15738 2002-06-07 Blastp of sequenced clone
CG15738 2003-01-01 Sim4 clustering to Release 3
CG15738 2008-04-29 Release 5.5 accounting
CG15738 2008-08-15 Release 5.9 accounting
CG15738 2008-12-18 5.12 accounting

Clone Sequence Records

RE44923.complete Sequence

1137 bp (1137 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119646

> RE44923.complete
GGTTGTCTGGTGGAAAGAAGAAGCACAGATGCGGCGCCTGGTGCGAAATT
GGAATTGCCGATTGTTATTTAACGCCAAATCCGGCCAAGAAATTGTCAGC
CATGCCGGAATTCACCAGGAGGCCAAGACCAATGCGATTCCCAGGGAAAA
GAAAGTGATTGAGGCGGACAAGAATGGATACGGGGCCAAACATTGCATGA
GTCTAGTGGAGAAATACGACTACGAGAACTACCTGTGCACCTTGCTCCTA
CCACGGGAACTGCGACGTGCTGCCTTCGCCCTACGGGCATTCAATGTGGA
GGTCTCCAGATCGGTTAGCGGCCATCAAATTGAGCCGCAAATAGCCAAAA
TGCGCCTTAAGTTCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGAT
TCCCAAAGATCGTACGTGGAGGACCAGCCTGTCCTGCGCGAACTGAAGCA
CACGGTGGGCAGTCGCAAGCTAAATAAGGTATATTTGCGCCGTCTGGTCA
CAGCACGGGAACGTCCGCCCACGCATGCATTTGAGTCGATACGCGAGCTG
GAGGAGTACACGGAACAGACCTTCTCTTCGCTATTGCTCCTGCTGTTGGA
GGTGGGCGGAGTGCGTGACCTAAATGCTGATCATGCCGCCTCCCACTTGG
GCAAGGCCCAAGGCATCGCCACCCTGCTGCGATCGATACCGCTGGCAGGA
CGTCAGCAGGCGCCCTGCATTCCGCTCGAGGTGCTGGTGCTGCATGGCGT
CAGCCAGGAGCGCATCATTCGCTCTAAGAGCGACGACAAGGGTGTCGAGG
ACTGTATATTCGATGTGGCCAGTGCCGCCAATACGCACCTAAAGCTCGCC
AGGCAGCTGCACGATAAGGTGCCGCCGCAGGTGCGCAAGATCTTCCTCTC
CGCCGTGGCCACGGATGCATATTTGGAGCGCCTCCGCCGTGCCAACTTCC
TGCTAACCCACAAGAGCTGCGTAGGCCGCGACACCTTACTGCCAGCACGT
TTATTCTGGAAGTCGCTGCTTAATCGGTTCTGATAGCGATTATGTTAGTA
TGTAGTACGAAATAAATTCTTCATTGTTGACTTCTTTAATAAAAATCACT
TTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RE44923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15738-RA 1232 CG15738-RA 123..1230 2..1109 5540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11783861..11784487 326..952 3135 100 Plus
chrX 22417052 chrX 11783142..11783351 2..211 1050 100 Plus
chrX 22417052 chrX 11784721..11784876 952..1107 780 100 Plus
chrX 22417052 chrX 11783420..11783534 211..325 575 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11892730..11893356 326..952 3135 100 Plus
X 23542271 X 11892011..11892220 2..211 1050 100 Plus
X 23542271 X 11893590..11893747 952..1109 790 100 Plus
X 23542271 X 11892289..11892403 211..325 575 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11900828..11901454 326..952 3135 100 Plus
X 23527363 X 11900109..11900318 2..211 1050 100 Plus
X 23527363 X 11901688..11901845 952..1109 790 100 Plus
X 23527363 X 11900387..11900501 211..325 575 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:03:55 has no hits.

RE44923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:04:37 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11783420..11783534 211..325 100 -> Plus
chrX 11783141..11783350 1..210 99 -> Plus
chrX 11783861..11784486 326..951 100 -> Plus
chrX 11784721..11784876 952..1107 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:18:00 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 1..1005 29..1033 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:53 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 1..1005 29..1033 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:30:46 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 1..1005 29..1033 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:13 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 1..1005 29..1033 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:11:30 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 1..1005 29..1033 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:57:58 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 2..1107 2..1107 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:53 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 2..1107 2..1107 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:46 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 4..1110 1..1107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:13 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 2..1107 2..1107 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:11:30 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 4..1110 1..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:04:37 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11892010..11892219 1..210 99 -> Plus
X 11892289..11892403 211..325 100 -> Plus
X 11892730..11893355 326..951 100 -> Plus
X 11893590..11893745 952..1107 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:04:37 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11892010..11892219 1..210 99 -> Plus
X 11892289..11892403 211..325 100 -> Plus
X 11892730..11893355 326..951 100 -> Plus
X 11893590..11893745 952..1107 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:04:37 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11892010..11892219 1..210 99 -> Plus
X 11892289..11892403 211..325 100 -> Plus
X 11892730..11893355 326..951 100 -> Plus
X 11893590..11893745 952..1107 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:46 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11786043..11786252 1..210 99 -> Plus
arm_X 11786322..11786436 211..325 100 -> Plus
arm_X 11786763..11787388 326..951 100 -> Plus
arm_X 11787623..11787778 952..1107 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:45 Download gff for RE44923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11900108..11900317 1..210 99 -> Plus
X 11900387..11900501 211..325 100 -> Plus
X 11900828..11901453 326..951 100 -> Plus
X 11901688..11901843 952..1107 100   Plus

RE44923.hyp Sequence

Translation from 0 to 1032

> RE44923.hyp
VVWWKEEAQMRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREK
KVIEADKNGYGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVE
VSRSVSGHQIEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKH
TVGSRKLNKVYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLE
VGGVRDLNADHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGV
SQERIIRSKSDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLS
AVATDAYLERLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRF*

RE44923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
sicily-PB 334 CG15738-PB 1..334 10..343 1717 100 Plus
sicily-PA 334 CG15738-PA 1..334 10..343 1717 100 Plus

RE44923.pep Sequence

Translation from 28 to 1032

> RE44923.pep
MRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREKKVIEADKNG
YGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVEVSRSVSGHQ
IEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKHTVGSRKLNK
VYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLEVGGVRDLNA
DHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGVSQERIIRSK
SDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLSAVATDAYLE
RLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRF*

RE44923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21577-PA 330 GF21577-PA 1..330 1..334 1348 75.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18453-PA 334 GG18453-PA 1..334 1..334 1687 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12743-PA 339 GH12743-PA 3..339 11..334 1144 65.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
sicily-PB 334 CG15738-PB 1..334 1..334 1717 100 Plus
sicily-PA 334 CG15738-PA 1..334 1..334 1717 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15887-PA 278 GI15887-PA 1..278 57..334 1100 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20157-PA 327 GL20157-PA 1..327 1..334 1394 79 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13926-PA 327 GA13926-PA 1..327 1..334 1401 79.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13243-PA 334 GM13243-PA 1..334 1..334 1741 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16996-PA 197 GD16996-PA 1..184 1..184 966 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16634-PA 346 GJ16634-PA 60..346 48..334 1121 72.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25500-PA 328 GK25500-PA 29..328 31..334 1169 72.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15675-PA 334 GE15675-PA 1..334 1..334 1686 96.1 Plus