BDGP Sequence Production Resources |
Search the DGRC for RE44923
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 449 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | sicily-RA |
Protein status: | RE44923.pep: gold |
Preliminary Size: | 1005 |
Sequenced Size: | 1137 |
Gene | Date | Evidence |
---|---|---|
CG15738 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15738 | 2002-06-07 | Blastp of sequenced clone |
CG15738 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15738 | 2008-04-29 | Release 5.5 accounting |
CG15738 | 2008-08-15 | Release 5.9 accounting |
CG15738 | 2008-12-18 | 5.12 accounting |
1137 bp (1137 high quality bases) assembled on 2002-06-07
GenBank Submission: AY119646
> RE44923.complete GGTTGTCTGGTGGAAAGAAGAAGCACAGATGCGGCGCCTGGTGCGAAATT GGAATTGCCGATTGTTATTTAACGCCAAATCCGGCCAAGAAATTGTCAGC CATGCCGGAATTCACCAGGAGGCCAAGACCAATGCGATTCCCAGGGAAAA GAAAGTGATTGAGGCGGACAAGAATGGATACGGGGCCAAACATTGCATGA GTCTAGTGGAGAAATACGACTACGAGAACTACCTGTGCACCTTGCTCCTA CCACGGGAACTGCGACGTGCTGCCTTCGCCCTACGGGCATTCAATGTGGA GGTCTCCAGATCGGTTAGCGGCCATCAAATTGAGCCGCAAATAGCCAAAA TGCGCCTTAAGTTCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGAT TCCCAAAGATCGTACGTGGAGGACCAGCCTGTCCTGCGCGAACTGAAGCA CACGGTGGGCAGTCGCAAGCTAAATAAGGTATATTTGCGCCGTCTGGTCA CAGCACGGGAACGTCCGCCCACGCATGCATTTGAGTCGATACGCGAGCTG GAGGAGTACACGGAACAGACCTTCTCTTCGCTATTGCTCCTGCTGTTGGA GGTGGGCGGAGTGCGTGACCTAAATGCTGATCATGCCGCCTCCCACTTGG GCAAGGCCCAAGGCATCGCCACCCTGCTGCGATCGATACCGCTGGCAGGA CGTCAGCAGGCGCCCTGCATTCCGCTCGAGGTGCTGGTGCTGCATGGCGT CAGCCAGGAGCGCATCATTCGCTCTAAGAGCGACGACAAGGGTGTCGAGG ACTGTATATTCGATGTGGCCAGTGCCGCCAATACGCACCTAAAGCTCGCC AGGCAGCTGCACGATAAGGTGCCGCCGCAGGTGCGCAAGATCTTCCTCTC CGCCGTGGCCACGGATGCATATTTGGAGCGCCTCCGCCGTGCCAACTTCC TGCTAACCCACAAGAGCTGCGTAGGCCGCGACACCTTACTGCCAGCACGT TTATTCTGGAAGTCGCTGCTTAATCGGTTCTGATAGCGATTATGTTAGTA TGTAGTACGAAATAAATTCTTCATTGTTGACTTCTTTAATAAAAATCACT TTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15738-RA | 1232 | CG15738-RA | 123..1230 | 2..1109 | 5540 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 11783861..11784487 | 326..952 | 3135 | 100 | Plus |
chrX | 22417052 | chrX | 11783142..11783351 | 2..211 | 1050 | 100 | Plus |
chrX | 22417052 | chrX | 11784721..11784876 | 952..1107 | 780 | 100 | Plus |
chrX | 22417052 | chrX | 11783420..11783534 | 211..325 | 575 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 11892730..11893356 | 326..952 | 3135 | 100 | Plus |
X | 23542271 | X | 11892011..11892220 | 2..211 | 1050 | 100 | Plus |
X | 23542271 | X | 11893590..11893747 | 952..1109 | 790 | 100 | Plus |
X | 23542271 | X | 11892289..11892403 | 211..325 | 575 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 11900828..11901454 | 326..952 | 3135 | 100 | Plus |
X | 23527363 | X | 11900109..11900318 | 2..211 | 1050 | 100 | Plus |
X | 23527363 | X | 11901688..11901845 | 952..1109 | 790 | 100 | Plus |
X | 23527363 | X | 11900387..11900501 | 211..325 | 575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11783420..11783534 | 211..325 | 100 | -> | Plus |
chrX | 11783141..11783350 | 1..210 | 99 | -> | Plus |
chrX | 11783861..11784486 | 326..951 | 100 | -> | Plus |
chrX | 11784721..11784876 | 952..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15738-RA | 1..1005 | 29..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15738-RA | 1..1005 | 29..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sicily-RA | 1..1005 | 29..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15738-RA | 1..1005 | 29..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sicily-RA | 1..1005 | 29..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15738-RA | 2..1107 | 2..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15738-RA | 2..1107 | 2..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sicily-RA | 4..1110 | 1..1107 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15738-RA | 2..1107 | 2..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sicily-RA | 4..1110 | 1..1107 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11892010..11892219 | 1..210 | 99 | -> | Plus |
X | 11892289..11892403 | 211..325 | 100 | -> | Plus |
X | 11892730..11893355 | 326..951 | 100 | -> | Plus |
X | 11893590..11893745 | 952..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11892010..11892219 | 1..210 | 99 | -> | Plus |
X | 11892289..11892403 | 211..325 | 100 | -> | Plus |
X | 11892730..11893355 | 326..951 | 100 | -> | Plus |
X | 11893590..11893745 | 952..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11892010..11892219 | 1..210 | 99 | -> | Plus |
X | 11892289..11892403 | 211..325 | 100 | -> | Plus |
X | 11892730..11893355 | 326..951 | 100 | -> | Plus |
X | 11893590..11893745 | 952..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11786043..11786252 | 1..210 | 99 | -> | Plus |
arm_X | 11786322..11786436 | 211..325 | 100 | -> | Plus |
arm_X | 11786763..11787388 | 326..951 | 100 | -> | Plus |
arm_X | 11787623..11787778 | 952..1107 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11900108..11900317 | 1..210 | 99 | -> | Plus |
X | 11900387..11900501 | 211..325 | 100 | -> | Plus |
X | 11900828..11901453 | 326..951 | 100 | -> | Plus |
X | 11901688..11901843 | 952..1107 | 100 | Plus |
Translation from 0 to 1032
> RE44923.hyp VVWWKEEAQMRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREK KVIEADKNGYGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVE VSRSVSGHQIEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKH TVGSRKLNKVYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLE VGGVRDLNADHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGV SQERIIRSKSDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLS AVATDAYLERLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRF*
Translation from 28 to 1032
> RE44923.pep MRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREKKVIEADKNG YGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVEVSRSVSGHQ IEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKHTVGSRKLNK VYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLEVGGVRDLNA DHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGVSQERIIRSK SDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLSAVATDAYLE RLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21577-PA | 330 | GF21577-PA | 1..330 | 1..334 | 1348 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18453-PA | 334 | GG18453-PA | 1..334 | 1..334 | 1687 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12743-PA | 339 | GH12743-PA | 3..339 | 11..334 | 1144 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sicily-PB | 334 | CG15738-PB | 1..334 | 1..334 | 1717 | 100 | Plus |
sicily-PA | 334 | CG15738-PA | 1..334 | 1..334 | 1717 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15887-PA | 278 | GI15887-PA | 1..278 | 57..334 | 1100 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20157-PA | 327 | GL20157-PA | 1..327 | 1..334 | 1394 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13926-PA | 327 | GA13926-PA | 1..327 | 1..334 | 1401 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13243-PA | 334 | GM13243-PA | 1..334 | 1..334 | 1741 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16996-PA | 197 | GD16996-PA | 1..184 | 1..184 | 966 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16634-PA | 346 | GJ16634-PA | 60..346 | 48..334 | 1121 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25500-PA | 328 | GK25500-PA | 29..328 | 31..334 | 1169 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15675-PA | 334 | GE15675-PA | 1..334 | 1..334 | 1686 | 96.1 | Plus |