Clone RE45066 Report

Search the DGRC for RE45066

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:450
Well:66
Vector:pFlc-1
Associated Gene/TranscriptCG9896-RA
Protein status:RE45066.pep: gold
Preliminary Size:1008
Sequenced Size:2059

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9896 2002-01-01 Sim4 clustering to Release 2
CG9896 2002-04-26 Blastp of sequenced clone
CG9896 2003-01-01 Sim4 clustering to Release 3
CG9896 2008-04-29 Release 5.5 accounting
CG9896 2008-08-15 Release 5.9 accounting
CG9896 2008-12-18 5.12 accounting

Clone Sequence Records

RE45066.complete Sequence

2059 bp (2059 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113481

> RE45066.complete
GAGTACGCTTCTGTCACTCGGTCGGCTAACAACACGGCGCGCTTGCTCCG
CTCAGGTCCGCTCCACCGCCTCGATCCCGATCCCAAACACGATCGCCATA
CCGCCAAACAGCCACACCGCTCGTCGGACTGCCCGCTGCAGTTGTCATTC
GAAAGCGCGTCGCTCGGCGGCTCCAGACCAAACGAAACCAGTTACAAGCA
CTTAACTGCCCTTGCGGAAACAATTGCATTGTAAACAGCCAGCAGAAAGC
TAAGGAGTGCGGGGAAATGCATCAAATGTGGAATCGCAACTGGAGCTGGA
CTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCGGAGGTGGCCAAT
TCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGCCGAACCACTTGA
TATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGGCCAAGAAGGAGG
AACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTGAGGTGCATACAG
AGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAATCAGTTCAACAA
GCTCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTG
CCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCTGAAATGGCCAAG
AAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGACCATGGTGTTCCT
CAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCACCCTGAACGAGA
ACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTGGATTGCTCGGAG
GATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAAGTTTACGCGTCA
ACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCTACTGCGAGGACT
TCACCCGAAATCCGGGCATCTGCAGGGATGGCGAGGGCAATGGCTCCACG
CGAGCAGCTGGCAGTAGTTTGGGACTCCTGCTCACAGGGACATTGCTGAC
ACTGCTGGTCAGCAGAGGCAACAGATAGATGGCAGAGGCACAGCTAAGTG
CACAAATCTAGAACCAGTCTTACCAGAAAGGAAATTCGTGCGAGAAGGTG
AAGCGAACAAGGCAAAGGATAAATAGTTAAGGTTTCCCCCATCACACCGA
AAGAAGAATTCCACACGCTGTTGCATACTTCTGGCAGTCAGTTTAGGCCA
CAGAATCCCCGAGAGGTCAAAGAAGTAAGCTATACAGTAAAATACACGTT
AAGTATGTTATGTATATTAGTATGCATATATCAAAGATCTATAGGGAATA
TGAGAGCAGAGTCAAGATCGTATATATATATGTATATATATATGCGGATA
TGTGTGTTACTATATAGTGGATATAGGCTAGCTAGTTAGAATCAGTGTTG
AGTGTGGCAGGCAGGTTAGTTGTTGTTGGCCTTACTTTCCAGTCGTCGTC
GATCGTGCAATACTAGAGTTTCGTTGAGTTTGTTGAAGTTGTCCAGGCTT
TAAGTGTAGGCATATTTTAGAGAATAACCCTAAGTTTCACAAATCGTTGT
TAGCTGAAGTTAGAGCGCTCCCCACCCCCCCACATCTGTTTTCCGTAATA
CCAGGCAATATCAAAAATCGAATGATCAGATGATCGTTTGGAAACGCCTA
TGTACCTCTTAATAGCAGTATGTTTGCAAAGTCAGTTTTCGTTACTCACA
CAGCACTAAGCGCACAAGAAAATATCCCGAGCGGATTTGCTCACATATCG
GCAATAAATTTAGATTAACAAAAAGTGCATTTCTATGAATCAGGATTTTT
AAATTATTTATAAACCTATTTAGTGTATATTTATTTCCCACACTGTAAAT
ACCTTTAAATATATTCAAAATCGGAAATACATATACGAATAAATATTAGT
TTAACTTAAAAATACACTCACACACAAACACACACACCTACTTACAAAAA
CTGTGAATATATATTATGATTAAAGAGTAACATTTATTTTAAGTAAAACA
CACACATGCATATGCAAGGAAAAACAATAAAAAATGAGAAAACAAAAAAA
AAAAAAAAA

RE45066.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-RA 2217 CG9896-RA 94..2138 2..2046 10210 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18880154..18881313 2042..883 5785 99.9 Minus
chr2R 21145070 chr2R 18881808..18882107 769..470 1470 99.3 Minus
chr2R 21145070 chr2R 18885186..18885366 182..2 905 100 Minus
chr2R 21145070 chr2R 18882374..18882525 469..318 745 99.3 Minus
chr2R 21145070 chr2R 18882861..18882996 318..183 680 100 Minus
chr2R 21145070 chr2R 18881369..18881484 884..769 580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22993666..22994829 2046..883 5805 99.9 Minus
2R 25286936 2R 22995324..22995623 769..470 1500 100 Minus
2R 25286936 2R 22998703..22998883 182..2 905 100 Minus
2R 25286936 2R 22995890..22996041 469..318 760 100 Minus
2R 25286936 2R 22996377..22996512 318..183 680 100 Minus
2R 25286936 2R 22994885..22995000 884..769 580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22994865..22996028 2046..883 5805 99.9 Minus
2R 25260384 2R 22996523..22996822 769..470 1500 100 Minus
2R 25260384 2R 22999902..23000082 182..2 905 100 Minus
2R 25260384 2R 22997089..22997240 469..318 760 100 Minus
2R 25260384 2R 22997576..22997711 318..183 680 100 Minus
2R 25260384 2R 22996084..22996199 884..769 580 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:23:47 has no hits.

RE45066.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:24:36 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18882374..18882524 319..469 99 <- Minus
chr2R 18882861..18882996 183..318 100 <- Minus
chr2R 18885186..18885366 1..182 99   Minus
chr2R 18880177..18881311 885..2019 97 <- Minus
chr2R 18881369..18881483 770..884 100 <- Minus
chr2R 18881808..18882107 470..769 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:18:06 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..762 267..1028 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:08 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..762 267..1028 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:18:38 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..762 267..1028 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:27 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..762 267..1028 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:01 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..762 267..1028 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:35:33 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..2018 2..2019 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:08 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..2018 2..2019 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:18:38 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 2..2019 2..2019 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:27 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..2018 2..2019 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:01 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 2..2019 2..2019 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:36 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22993693..22994827 885..2019 100 <- Minus
2R 22994885..22994999 770..884 100 <- Minus
2R 22995324..22995623 470..769 100 <- Minus
2R 22995890..22996040 319..469 100 <- Minus
2R 22996377..22996512 183..318 100 <- Minus
2R 22998703..22998883 1..182 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:36 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22993693..22994827 885..2019 100 <- Minus
2R 22994885..22994999 770..884 100 <- Minus
2R 22995324..22995623 470..769 100 <- Minus
2R 22995890..22996040 319..469 100 <- Minus
2R 22996377..22996512 183..318 100 <- Minus
2R 22998703..22998883 1..182 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:36 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22993693..22994827 885..2019 100 <- Minus
2R 22994885..22994999 770..884 100 <- Minus
2R 22995324..22995623 470..769 100 <- Minus
2R 22995890..22996040 319..469 100 <- Minus
2R 22996377..22996512 183..318 100 <- Minus
2R 22998703..22998883 1..182 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:18:38 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18881216..18882350 885..2019 100 <- Minus
arm_2R 18882408..18882522 770..884 100 <- Minus
arm_2R 18882847..18883146 470..769 100 <- Minus
arm_2R 18883413..18883563 319..469 100 <- Minus
arm_2R 18883900..18884035 183..318 100 <- Minus
arm_2R 18886226..18886406 1..182 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:19 Download gff for RE45066.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22994910..22996044 885..2019 100 <- Minus
2R 22996102..22996216 770..884 100 <- Minus
2R 22996541..22996840 470..769 100 <- Minus
2R 22997107..22997257 319..469 100 <- Minus
2R 22997594..22997729 183..318 100 <- Minus
2R 22999920..23000100 1..182 99   Minus

RE45066.pep Sequence

Translation from 266 to 1027

> RE45066.pep
MHQMWNRNWSWTLLVFSALLLLSAEVANSEECGQEEFTKCAEPLDMLHLT
SDFSIGPAKKEELEKLCHELRKGVRCIQSYTRRCMDLQQRNQFNKLYHDT
NQFIRDLCNKGAFQDEYLKHVPCSEMAKKEFEVCSNRYRETMVFLKPNKN
QENSENGTLNENIKTICCSINELVDCSEDAARKICGNEAAKFTRQLVDKY
ANSLTKIYCEDFTRNPGICRDGEGNGSTRAAGSSLGLLLTGTLLTLLVSR
GNR*

RE45066.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11309-PA 250 GF11309-PA 1..250 1..253 1125 86.2 Plus
Dana\GF11308-PA 253 GF11308-PA 26..213 30..225 794 75.5 Plus
Dana\GF18067-PA 229 GF18067-PA 1..174 19..195 150 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20078-PA 253 GG20078-PA 1..253 1..253 1332 97.6 Plus
Dere\GG11105-PA 263 GG11105-PA 36..204 24..195 160 24.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20916-PA 203 GH20916-PA 1..183 46..228 887 88 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-PA 253 CG9896-PA 1..253 1..253 1353 100 Plus
CG13408-PA 257 CG13408-PA 36..205 23..195 169 23.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18351-PA 297 GI18351-PA 64..277 14..228 1004 87 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10164-PA 256 GL10164-PA 1..249 1..248 1070 81.5 Plus
Dper\GL23658-PA 251 GL23658-PA 39..248 29..250 150 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22109-PA 256 GA22109-PA 1..249 1..248 1075 81.5 Plus
Dpse\GA12264-PB 251 GA12264-PB 39..248 29..250 150 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15593-PA 253 GM15593-PA 1..253 1..253 1348 99.6 Plus
Dsec\GM26399-PA 256 GM26399-PA 38..204 26..195 160 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25092-PA 253 GD25092-PA 1..253 1..253 1348 99.6 Plus
Dsim\GD20920-PA 256 GD20920-PA 38..204 26..195 160 24.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20750-PA 254 GJ20750-PA 14..243 6..237 1005 80.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19605-PA 247 GK19605-PA 1..232 1..234 999 80.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11616-PA 253 GE11616-PA 1..253 1..253 1047 87 Plus
Dyak\GE10267-PA 263 GE10267-PA 38..204 26..195 160 24.7 Plus

RE45066.hyp Sequence

Translation from 266 to 1027

> RE45066.hyp
MHQMWNRNWSWTLLVFSALLLLSAEVANSEECGQEEFTKCAEPLDMLHLT
SDFSIGPAKKEELEKLCHELRKGVRCIQSYTRRCMDLQQRNQFNKLYHDT
NQFIRDLCNKGAFQDEYLKHVPCSEMAKKEFEVCSNRYRETMVFLKPNKN
QENSENGTLNENIKTICCSINELVDCSEDAARKICGNEAAKFTRQLVDKY
ANSLTKIYCEDFTRNPGICRDGEGNGSTRAAGSSLGLLLTGTLLTLLVSR
GNR*

RE45066.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-PA 253 CG9896-PA 1..253 1..253 1353 100 Plus
CG13408-PA 257 CG13408-PA 36..205 23..195 169 23.7 Plus