BDGP Sequence Production Resources |
Search the DGRC for RE45066
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 450 |
Well: | 66 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9896-RA |
Protein status: | RE45066.pep: gold |
Preliminary Size: | 1008 |
Sequenced Size: | 2059 |
Gene | Date | Evidence |
---|---|---|
CG9896 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9896 | 2002-04-26 | Blastp of sequenced clone |
CG9896 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9896 | 2008-04-29 | Release 5.5 accounting |
CG9896 | 2008-08-15 | Release 5.9 accounting |
CG9896 | 2008-12-18 | 5.12 accounting |
2059 bp (2059 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113481
> RE45066.complete GAGTACGCTTCTGTCACTCGGTCGGCTAACAACACGGCGCGCTTGCTCCG CTCAGGTCCGCTCCACCGCCTCGATCCCGATCCCAAACACGATCGCCATA CCGCCAAACAGCCACACCGCTCGTCGGACTGCCCGCTGCAGTTGTCATTC GAAAGCGCGTCGCTCGGCGGCTCCAGACCAAACGAAACCAGTTACAAGCA CTTAACTGCCCTTGCGGAAACAATTGCATTGTAAACAGCCAGCAGAAAGC TAAGGAGTGCGGGGAAATGCATCAAATGTGGAATCGCAACTGGAGCTGGA CTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCGGAGGTGGCCAAT TCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGCCGAACCACTTGA TATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGGCCAAGAAGGAGG AACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTGAGGTGCATACAG AGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAATCAGTTCAACAA GCTCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTG CCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCTGAAATGGCCAAG AAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGACCATGGTGTTCCT CAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCACCCTGAACGAGA ACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTGGATTGCTCGGAG GATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAAGTTTACGCGTCA ACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCTACTGCGAGGACT TCACCCGAAATCCGGGCATCTGCAGGGATGGCGAGGGCAATGGCTCCACG CGAGCAGCTGGCAGTAGTTTGGGACTCCTGCTCACAGGGACATTGCTGAC ACTGCTGGTCAGCAGAGGCAACAGATAGATGGCAGAGGCACAGCTAAGTG CACAAATCTAGAACCAGTCTTACCAGAAAGGAAATTCGTGCGAGAAGGTG AAGCGAACAAGGCAAAGGATAAATAGTTAAGGTTTCCCCCATCACACCGA AAGAAGAATTCCACACGCTGTTGCATACTTCTGGCAGTCAGTTTAGGCCA CAGAATCCCCGAGAGGTCAAAGAAGTAAGCTATACAGTAAAATACACGTT AAGTATGTTATGTATATTAGTATGCATATATCAAAGATCTATAGGGAATA TGAGAGCAGAGTCAAGATCGTATATATATATGTATATATATATGCGGATA TGTGTGTTACTATATAGTGGATATAGGCTAGCTAGTTAGAATCAGTGTTG AGTGTGGCAGGCAGGTTAGTTGTTGTTGGCCTTACTTTCCAGTCGTCGTC GATCGTGCAATACTAGAGTTTCGTTGAGTTTGTTGAAGTTGTCCAGGCTT TAAGTGTAGGCATATTTTAGAGAATAACCCTAAGTTTCACAAATCGTTGT TAGCTGAAGTTAGAGCGCTCCCCACCCCCCCACATCTGTTTTCCGTAATA CCAGGCAATATCAAAAATCGAATGATCAGATGATCGTTTGGAAACGCCTA TGTACCTCTTAATAGCAGTATGTTTGCAAAGTCAGTTTTCGTTACTCACA CAGCACTAAGCGCACAAGAAAATATCCCGAGCGGATTTGCTCACATATCG GCAATAAATTTAGATTAACAAAAAGTGCATTTCTATGAATCAGGATTTTT AAATTATTTATAAACCTATTTAGTGTATATTTATTTCCCACACTGTAAAT ACCTTTAAATATATTCAAAATCGGAAATACATATACGAATAAATATTAGT TTAACTTAAAAATACACTCACACACAAACACACACACCTACTTACAAAAA CTGTGAATATATATTATGATTAAAGAGTAACATTTATTTTAAGTAAAACA CACACATGCATATGCAAGGAAAAACAATAAAAAATGAGAAAACAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9896-RA | 2217 | CG9896-RA | 94..2138 | 2..2046 | 10210 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18880154..18881313 | 2042..883 | 5785 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 18881808..18882107 | 769..470 | 1470 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 18885186..18885366 | 182..2 | 905 | 100 | Minus |
chr2R | 21145070 | chr2R | 18882374..18882525 | 469..318 | 745 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 18882861..18882996 | 318..183 | 680 | 100 | Minus |
chr2R | 21145070 | chr2R | 18881369..18881484 | 884..769 | 580 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22993666..22994829 | 2046..883 | 5805 | 99.9 | Minus |
2R | 25286936 | 2R | 22995324..22995623 | 769..470 | 1500 | 100 | Minus |
2R | 25286936 | 2R | 22998703..22998883 | 182..2 | 905 | 100 | Minus |
2R | 25286936 | 2R | 22995890..22996041 | 469..318 | 760 | 100 | Minus |
2R | 25286936 | 2R | 22996377..22996512 | 318..183 | 680 | 100 | Minus |
2R | 25286936 | 2R | 22994885..22995000 | 884..769 | 580 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22994865..22996028 | 2046..883 | 5805 | 99.9 | Minus |
2R | 25260384 | 2R | 22996523..22996822 | 769..470 | 1500 | 100 | Minus |
2R | 25260384 | 2R | 22999902..23000082 | 182..2 | 905 | 100 | Minus |
2R | 25260384 | 2R | 22997089..22997240 | 469..318 | 760 | 100 | Minus |
2R | 25260384 | 2R | 22997576..22997711 | 318..183 | 680 | 100 | Minus |
2R | 25260384 | 2R | 22996084..22996199 | 884..769 | 580 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18882374..18882524 | 319..469 | 99 | <- | Minus |
chr2R | 18882861..18882996 | 183..318 | 100 | <- | Minus |
chr2R | 18885186..18885366 | 1..182 | 99 | Minus | |
chr2R | 18880177..18881311 | 885..2019 | 97 | <- | Minus |
chr2R | 18881369..18881483 | 770..884 | 100 | <- | Minus |
chr2R | 18881808..18882107 | 470..769 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..762 | 267..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..762 | 267..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..762 | 267..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..762 | 267..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..762 | 267..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..2018 | 2..2019 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..2018 | 2..2019 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 2..2019 | 2..2019 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 1..2018 | 2..2019 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9896-RA | 2..2019 | 2..2019 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22993693..22994827 | 885..2019 | 100 | <- | Minus |
2R | 22994885..22994999 | 770..884 | 100 | <- | Minus |
2R | 22995324..22995623 | 470..769 | 100 | <- | Minus |
2R | 22995890..22996040 | 319..469 | 100 | <- | Minus |
2R | 22996377..22996512 | 183..318 | 100 | <- | Minus |
2R | 22998703..22998883 | 1..182 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22993693..22994827 | 885..2019 | 100 | <- | Minus |
2R | 22994885..22994999 | 770..884 | 100 | <- | Minus |
2R | 22995324..22995623 | 470..769 | 100 | <- | Minus |
2R | 22995890..22996040 | 319..469 | 100 | <- | Minus |
2R | 22996377..22996512 | 183..318 | 100 | <- | Minus |
2R | 22998703..22998883 | 1..182 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22993693..22994827 | 885..2019 | 100 | <- | Minus |
2R | 22994885..22994999 | 770..884 | 100 | <- | Minus |
2R | 22995324..22995623 | 470..769 | 100 | <- | Minus |
2R | 22995890..22996040 | 319..469 | 100 | <- | Minus |
2R | 22996377..22996512 | 183..318 | 100 | <- | Minus |
2R | 22998703..22998883 | 1..182 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18881216..18882350 | 885..2019 | 100 | <- | Minus |
arm_2R | 18882408..18882522 | 770..884 | 100 | <- | Minus |
arm_2R | 18882847..18883146 | 470..769 | 100 | <- | Minus |
arm_2R | 18883413..18883563 | 319..469 | 100 | <- | Minus |
arm_2R | 18883900..18884035 | 183..318 | 100 | <- | Minus |
arm_2R | 18886226..18886406 | 1..182 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22994910..22996044 | 885..2019 | 100 | <- | Minus |
2R | 22996102..22996216 | 770..884 | 100 | <- | Minus |
2R | 22996541..22996840 | 470..769 | 100 | <- | Minus |
2R | 22997107..22997257 | 319..469 | 100 | <- | Minus |
2R | 22997594..22997729 | 183..318 | 100 | <- | Minus |
2R | 22999920..23000100 | 1..182 | 99 | Minus |
Translation from 266 to 1027
> RE45066.pep MHQMWNRNWSWTLLVFSALLLLSAEVANSEECGQEEFTKCAEPLDMLHLT SDFSIGPAKKEELEKLCHELRKGVRCIQSYTRRCMDLQQRNQFNKLYHDT NQFIRDLCNKGAFQDEYLKHVPCSEMAKKEFEVCSNRYRETMVFLKPNKN QENSENGTLNENIKTICCSINELVDCSEDAARKICGNEAAKFTRQLVDKY ANSLTKIYCEDFTRNPGICRDGEGNGSTRAAGSSLGLLLTGTLLTLLVSR GNR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11309-PA | 250 | GF11309-PA | 1..250 | 1..253 | 1125 | 86.2 | Plus |
Dana\GF11308-PA | 253 | GF11308-PA | 26..213 | 30..225 | 794 | 75.5 | Plus |
Dana\GF18067-PA | 229 | GF18067-PA | 1..174 | 19..195 | 150 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20078-PA | 253 | GG20078-PA | 1..253 | 1..253 | 1332 | 97.6 | Plus |
Dere\GG11105-PA | 263 | GG11105-PA | 36..204 | 24..195 | 160 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20916-PA | 203 | GH20916-PA | 1..183 | 46..228 | 887 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9896-PA | 253 | CG9896-PA | 1..253 | 1..253 | 1353 | 100 | Plus |
CG13408-PA | 257 | CG13408-PA | 36..205 | 23..195 | 169 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18351-PA | 297 | GI18351-PA | 64..277 | 14..228 | 1004 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10164-PA | 256 | GL10164-PA | 1..249 | 1..248 | 1070 | 81.5 | Plus |
Dper\GL23658-PA | 251 | GL23658-PA | 39..248 | 29..250 | 150 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22109-PA | 256 | GA22109-PA | 1..249 | 1..248 | 1075 | 81.5 | Plus |
Dpse\GA12264-PB | 251 | GA12264-PB | 39..248 | 29..250 | 150 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15593-PA | 253 | GM15593-PA | 1..253 | 1..253 | 1348 | 99.6 | Plus |
Dsec\GM26399-PA | 256 | GM26399-PA | 38..204 | 26..195 | 160 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25092-PA | 253 | GD25092-PA | 1..253 | 1..253 | 1348 | 99.6 | Plus |
Dsim\GD20920-PA | 256 | GD20920-PA | 38..204 | 26..195 | 160 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20750-PA | 254 | GJ20750-PA | 14..243 | 6..237 | 1005 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19605-PA | 247 | GK19605-PA | 1..232 | 1..234 | 999 | 80.8 | Plus |
Translation from 266 to 1027
> RE45066.hyp MHQMWNRNWSWTLLVFSALLLLSAEVANSEECGQEEFTKCAEPLDMLHLT SDFSIGPAKKEELEKLCHELRKGVRCIQSYTRRCMDLQQRNQFNKLYHDT NQFIRDLCNKGAFQDEYLKHVPCSEMAKKEFEVCSNRYRETMVFLKPNKN QENSENGTLNENIKTICCSINELVDCSEDAARKICGNEAAKFTRQLVDKY ANSLTKIYCEDFTRNPGICRDGEGNGSTRAAGSSLGLLLTGTLLTLLVSR GNR*