Clone RE45108 Report

Search the DGRC for RE45108

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:451
Well:8
Vector:pFlc-1
Associated Gene/TranscriptCG4611-RA
Protein status:RE45108.pep: gold
Preliminary Size:2112
Sequenced Size:2257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4611 2002-01-01 Sim4 clustering to Release 2
CG4611 2003-01-01 Sim4 clustering to Release 3
CG4611 2003-08-12 Blastp of sequenced clone
CG4611 2008-04-29 Release 5.5 accounting
CG4611 2008-08-15 Release 5.9 accounting
CG4611 2008-12-18 5.12 accounting

Clone Sequence Records

RE45108.complete Sequence

2257 bp (2257 high quality bases) assembled on 2003-08-12

GenBank Submission: BT011031

> RE45108.complete
CGTTTCTTTATTTACACCGCCGCCACACGCACGTTTAAAATAGTTTTTTT
TTAATTACATAAAAATCACAGAAAATTGCAACAGATAACATGGCTCTGCG
GTTGATTAGCCGTTCAATGAGCTGCCACATACGTGGCTTGCAATTAAATG
CCACCGGAAGACGGTTAAATAGTTACAACATCAGCCGGCTGGTTATTCTG
CCTGCAACTTGGTCTTGCTCACAAAATCGCCTGCTGCACGTGAGGATTAC
GGATCAACAAGCCGGTTTGGAGACCAAACGAGAGGCCAACAGGAACCAGA
ATCCTTTTCGCGAAGAAGTTTTTGAAGAACTTATCACAGCAGCACCCAAG
GAGCACCAGAAGTTTAAGCCAGAAAAGAAACCCAAAGAGAAGTCCACCAA
AAAGGTGCAGGATTTTGGTGATCCGGACACCTTTGGCGATGCCAAGGTGG
CTGCAACAGAAGACCCGGGTGATGTCGAGGAAGAGGAGTTCCTTAGCAAT
TCCACTAGGCGCTCAAAGAAACTAAAAGCCGTGGAATACGCCCGCCAAAT
TAAGGACCATCTTAAGGCGAATCGCCTAAATGAGGCCATCGCCGTGCTGG
AGCAACGGATGCTAAAGGAGGATCGCGCCAAGCCGGACAAGTACATATAC
AATCTGCTGATCAGTGGCTGTGCCAAGGCGGGCTACACCCGCAAGGCCTT
CTTCCTGTACACCAAGATGCGGCAACGTGGTCTTCAAGTCACCGGAGGAA
CCTACACTTCGCTATTCAACGCCTGCGCCAATGCTCCCTCCGTGAGCGAT
GGCCTGGCCAAGGCCCAAATCCTGCGGGAGAACATGCTCGAGAAGGGCTA
CGAACCAAATGTGAAAAACTACAATGCCATGATCAAGGCGTATGGAAGGT
GTGGCGATGTGGACACCGCCTACATGCTGGCCGACGAAATGATGGAGCGC
CAGCTGGAACTGAATGCAGATACATTCAACTTTCTGCTGCAGGCGTGTGC
CAGCAACTCGGAGCACGGTTTCCGGCATGCTCTGCTGACTTGGCACAACA
TGTTGCAGCGAGGTATTAGCCCGGACTACTACAGCTTCAATGCAATGCTG
AGATGTGCAAGGGATTGTGGCTTCGGTGACTTGGATTCCATGCGAGAGGT
TATCGATAAAATTGCGCCCTCAGCTGCTAGAAAGAAACCAGTTCTCCAGT
TGGAGAAAGGTCAGCAAGATGATTTACCCAGTGTGGAAGCCAACACAACT
ACGTTGCCTGCCCAAATTGAGGTGGCCACCACAGCGAGCGAGCTGGAACT
GCCCAATCTTTTGCTGCCTCAGCCGCATCTGGGCAGTCTGGTGGCCCTGG
AGGAGGTGACACGTCCACACGAACGTTTCTTGCTACTCGGCGGTCTCACT
GGCTTTCTGGAGCACATGAAGCAGCACAACATTACACCGGACATCGAGAC
ATTTACCGCAATGCTGGAGGTGATACCGCCCACAAATGCTGCCGAGAAGC
AGCTGCTCACGTTTGTGCGCAAGATTGGCCTCAAGGCGGACATCGACTTC
TTCAACATACTGATTAAAAAGCGTTCCATGCGCTTTGATTACGAGAGTGC
CAAGGAAGTGCTCCTCATGATTCGCACGGCGGGTTTGCGGCCGGACATTG
TCACCTACGGTGTGCTCGCTTTGGGTTGTCGCACGCAGGAAGAGGCTAGG
GAACTGCTGGAACAGATGCATGTGGCGGGCATTAAGATGAACATGCCCAT
ACTGGGGGCCATGCTGCGGCAGGGATGTGCTAACAAATCCTTTAGCTACG
TCAACGAGATCATTCAGTTGAGTCTGGAGGAGGGCCTTAAGCCAAATGAA
GCCTTCCTGCGGCACCTGCACAACTTTCACAGAGGTTGTGCGCGAGCCAT
TGATGCCAGACATCCATCAACCAAGACGGCAGCCTTTAAGAAGGGCCACT
CTAAGTTCTGTGATAAATACCGCCTGTACTACGAGGAGCAGGGACTGTCC
GGTCTCAAGCTGGAGGACGCCATTGCCAAGGTGAAGGAGCGCCCGTATGA
CCAGTTCAAGCTGCCGCCTGTCAACGGAATGGAACCACTCAAGCACGAGC
AGCTCAAGCACAAAACGAAACAGCGAAAGTACATCAAGAAGATCAAGATA
CACGAGCTGAAGGATGACCCTCCCAAAGAGTCTTTGAAGAGGATAGAATA
AGCTAAAAAGTTTAACTCCCAATAAAGTTTATTATTATTCGAAAAAAAAA
AAAAAAA

RE45108.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4611-RA 2263 CG4611-RA 24..2263 2..2241 11200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5128940..5130848 2..1910 9395 99.5 Plus
chr3L 24539361 chr3L 5130905..5131235 1911..2241 1595 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:57:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5136384..5138292 2..1910 9545 100 Plus
3L 28110227 3L 5138349..5138679 1911..2241 1655 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5129484..5131392 2..1910 9545 100 Plus
3L 28103327 3L 5131449..5131779 1911..2241 1655 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:21:56 has no hits.

RE45108.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:23:09 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5128938..5130848 1..1910 99 -> Plus
chr3L 5130905..5131235 1911..2241 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:18:09 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2112 90..2201 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:41 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2112 90..2201 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:25:18 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2112 90..2201 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:34:00 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2112 90..2201 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:56:00 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2112 90..2201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:03:05 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2242 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:41 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2240 2..2241 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:25:18 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 7..2248 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:34:01 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 1..2242 1..2241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:56:00 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4611-RA 7..2248 1..2241 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:09 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5136382..5138292 1..1910 99 -> Plus
3L 5138349..5138679 1911..2241 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:09 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5136382..5138292 1..1910 99 -> Plus
3L 5138349..5138679 1911..2241 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:09 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5136382..5138292 1..1910 99 -> Plus
3L 5138349..5138679 1911..2241 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:25:18 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5129482..5131392 1..1910 99 -> Plus
arm_3L 5131449..5131779 1911..2241 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:15:12 Download gff for RE45108.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5129482..5131392 1..1910 99 -> Plus
3L 5131449..5131779 1911..2241 100   Plus

RE45108.pep Sequence

Translation from 89 to 2200

> RE45108.pep
MALRLISRSMSCHIRGLQLNATGRRLNSYNISRLVILPATWSCSQNRLLH
VRITDQQAGLETKREANRNQNPFREEVFEELITAAPKEHQKFKPEKKPKE
KSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSNSTRRSKKLKAVEY
ARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYT
RKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENML
EKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLL
QACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDS
MREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTAS
ELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITP
DIETFTAMLEVIPPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFD
YESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQEEARELLEQMHVAGIKM
NMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRHLHNFHRGC
ARAIDARHPSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKE
RPYDQFKLPPVNGMEPLKHEQLKHKTKQRKYIKKIKIHELKDDPPKESLK
RIE*

RE45108.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23967-PA 703 GF23967-PA 1..703 1..703 2840 78.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15260-PA 703 GG15260-PA 1..702 1..702 3274 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16176-PA 711 GH16176-PA 1..711 1..703 2583 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4611-PA 703 CG4611-PA 1..703 1..703 3635 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13329-PA 723 GI13329-PA 1..723 1..703 2571 67.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22616-PA 707 GL22616-PA 1..707 1..703 2801 76.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18300-PA 707 GA18300-PA 1..707 1..703 2815 77.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14694-PA 686 GM14694-PA 1..686 1..703 3312 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13877-PA 702 GD13877-PA 1..702 1..703 3400 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13155-PA 721 GJ13155-PA 1..721 1..703 2482 68.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19803-PA 700 GK19803-PA 1..686 1..694 2368 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21482-PA 702 GE21482-PA 1..702 1..703 3276 92.6 Plus

RE45108.hyp Sequence

Translation from 89 to 2200

> RE45108.hyp
MALRLISRSMSCHIRGLQLNATGRRLNSYNISRLVILPATWSCSQNRLLH
VRITDQQAGLETKREANRNQNPFREEVFEELITAAPKEHQKFKPEKKPKE
KSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSNSTRRSKKLKAVEY
ARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYT
RKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENML
EKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLL
QACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDS
MREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTAS
ELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITP
DIETFTAMLEVIPPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFD
YESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQEEARELLEQMHVAGIKM
NMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRHLHNFHRGC
ARAIDARHPSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKE
RPYDQFKLPPVNGMEPLKHEQLKHKTKQRKYIKKIKIHELKDDPPKESLK
RIE*

RE45108.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4611-PA 703 CG4611-PA 1..703 1..703 3635 100 Plus