Clone RE45482 Report

Search the DGRC for RE45482

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:454
Well:82
Vector:pFlc-1
Associated Gene/TranscriptCG2846-RA
Protein status:RE45482.pep: gold
Preliminary Size:741
Sequenced Size:1001

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2846 2001-12-14 Blastp of sequenced clone
CG2846 2002-01-01 Sim4 clustering to Release 2
CG2846 2003-01-01 Sim4 clustering to Release 3
CG2846 2008-04-29 Release 5.5 accounting
CG2846 2008-08-15 Release 5.9 accounting
CG2846 2008-12-18 5.12 accounting

Clone Sequence Records

RE45482.complete Sequence

1001 bp (1001 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071393

> RE45482.complete
ATGAATGCGGAAAATTTGTCTGTGTGTTTATGAATATTATGCCGATCAAT
GGAACGAGGAATAGTTATGTGAGTGGCTACGCGGCAATCACAACATACGT
ACTCTGTAGAAAACCCCGCTTGACTCCTTGCCAGACTCGATAAATTGGCC
CGCAGCGCTTTGCGGTTGCACAGAATACCGCAAATCAACCGCCCATTGGC
CCCTGATATTCATTTCAAGCGCCAGCACAGCAGATCTGGGTCAGATTGCA
AGGAAATCTGGGAAATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCGAG
ATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACAGC
TAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCACTG
GCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGATG
GTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGCGT
GGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGACAC
TCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACTCC
CTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAGGC
GTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTTTA
CGGAGAAGCTCTGCTCGTCGAAATAGCGATGGCGTAGGTCAGTCTGGAAA
AGGAGGCTTTGCTGAAGGACGCACTACTACTCTTCGCACGGCTTTGAAAT
AGTTATTCCATCAGTTATCTTATCTCTCAATTTGCGCGATGTGCAAAGCG
GAATTCGAATATCGAATCAAGTACTTAAGCTAAACGTTTTCATTAAATTC
CTACTGCTCATAATGACACCAACAAATTGAACCAATCGCATTTCAGTTTG
ATACTTATCAAATGTATAAAAGAAACCGTTTTTGCAAAAAAAAAAAAAAA
A

RE45482.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RA 1263 CG2846-RA 67..1056 1..990 4935 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3738266..3738902 984..348 3185 100 Minus
chr3R 27901430 chr3R 3738965..3739313 349..1 1745 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7912224..7912866 990..348 3200 99.8 Minus
3R 32079331 3R 7912929..7913277 349..1 1745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7653055..7653697 990..348 3200 99.8 Minus
3R 31820162 3R 7653760..7654108 349..1 1745 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:20:18 has no hits.

RE45482.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:21:25 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3738265..3738900 350..985 99 <- Minus
chr3R 3738965..3739313 1..349 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:18:24 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..462 265..726 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:35 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..462 265..726 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:11:16 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..462 265..726 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:16 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..462 265..726 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:07 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..462 265..726 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:32:08 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..984 1..985 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:34 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..984 1..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:16 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 14..997 1..985 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:16 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..984 1..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:07 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 14..997 1..985 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:25 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7912929..7913277 1..349 100   Minus
3R 7912229..7912864 350..985 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:25 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7912929..7913277 1..349 100   Minus
3R 7912229..7912864 350..985 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:25 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7912929..7913277 1..349 100   Minus
3R 7912229..7912864 350..985 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:16 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3738651..3738999 1..349 100   Minus
arm_3R 3737951..3738586 350..985 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:05:16 Download gff for RE45482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7653060..7653695 350..985 99 <- Minus
3R 7653760..7654108 1..349 100   Minus

RE45482.pep Sequence

Translation from 264 to 725

> RE45482.pep
MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYG
WANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICI
VGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKLC
SSK*

RE45482.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16845-PA 154 GF16845-PA 1..151 1..150 680 84.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24851-PA 153 GG24851-PA 1..153 1..153 775 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19022-PA 152 GH19022-PA 1..149 1..149 603 71.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PB 153 CG2846-PB 1..153 1..153 807 100 Plus
CG2846-PA 153 CG2846-PA 1..153 1..153 807 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22835-PA 149 GI22835-PA 1..148 1..148 597 70.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12140-PA 155 GL12140-PA 1..147 1..147 657 81.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15482-PA 155 GA15482-PA 1..147 1..147 657 81.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10446-PA 153 GM10446-PA 1..153 1..153 801 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19451-PA 153 GD19451-PA 1..153 1..153 812 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24661-PA 152 GJ24661-PA 1..149 1..149 633 75.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11049-PA 152 GK11049-PA 1..149 1..149 662 80.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25761-PA 153 GE25761-PA 1..153 1..153 773 94.8 Plus

RE45482.hyp Sequence

Translation from 264 to 725

> RE45482.hyp
MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYG
WANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICI
VGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKLC
SSK*

RE45482.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PB 153 CG2846-PB 1..153 1..153 807 100 Plus
CG2846-PA 153 CG2846-PA 1..153 1..153 807 100 Plus