Clone RE45537 Report

Search the DGRC for RE45537

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:455
Well:37
Vector:pFlc-1
Associated Gene/TranscriptTgi-RB
Protein status:RE45537.pep: gold
Preliminary Size:1608
Sequenced Size:1916

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10741 2002-01-01 Sim4 clustering to Release 2
CG10741 2003-01-01 Sim4 clustering to Release 3
CG10741 2003-08-12 Blastp of sequenced clone
CG10741 2008-04-29 Release 5.5 accounting
CG10741 2008-08-15 Release 5.9 accounting
CG10741 2008-12-18 5.12 accounting

Clone Sequence Records

RE45537.complete Sequence

1916 bp (1916 high quality bases) assembled on 2003-08-12

GenBank Submission: BT011029

> RE45537.complete
GACTTTGGCCATCGATGTTACATCGACGTATCTTCCAGCTCTAACGCGAA
CTGAACTATTATTGCAATTATACCAAAAATCATCGAACCCCCGCTTTTCC
CAGCGCAAATCGTGAAAAGTCGGTGAAAATTAGCGAGGATAAATCGCCGT
ACAGCTGAGGAGCAGGATTCCAGCGAGGATTTGAAGGCGCACACCTGGCG
AAAGTGTGAAACTCATGCGGTGCAGATCGAGTCGGTGCAGGAGCAGCGAA
ACCAAGTCCAAGTCCAACTCCAAATCCACGTCCAATCCCACGTAGAAGCG
TTGAGATCATCATGGAAACGGCGCTGGATGTACTCTCTAGAGCGGCGACC
ATGGTGCAAAACAATCCCAGCGAGATGCGTGCGACGTCCAAGGTGCTGAC
CACCACCAAATGGCGACGCGAGCGGCGTCAGCGTAGTGCCGGATACCAGC
CGCACGAGGCAGGCAACAGCGAGAGGGAGCGGGAACGGGAGCGGGATCGA
GAGGATCGCGACATGGACAGTCCCATTGACATGTCGGTGACGACGGGAGC
TCTGAAGCAGAGAGCCTCACCGCCGCCACCCTATCGCGAACCCTTGCCTG
GGACCAACTACGCGGCCAACAGTCGACCCAGCGTCATTACCCAGGCTCCA
CCCAAGCGAGAACCACCGGAGCAGGCCCACTCTACAGATATGGCGATGTG
CGACATTGACGAGCACTTCCGACGCTCACTGGGCGAGAACTATGCTGCCC
TGTTCGCCAAGAAGTCACCGACGCCTACGCCAACACCCACGCCCTCGCCA
AGTGGTACACCTAAGCAGCAGGTTTCGCCACTGGCCTACGGACTGCCTTC
ATCAACCAGCACAGCGGCATCGCAGCACTACCAGCAGCAACGCTCGCCGC
TGGCCAAGTCGGGATGGGTCATTCTGGAGCCCGAATCGCTGCAGCCGGAA
CTGCCGCCGCCGCAGGAGGAACCGCTTCCCCTGTCGCTGGCACTGCATCG
CACCCAAACGCCGCCATCGCCGCCACCTTCGGCCACGGGATCGGCACCAG
CGCTACCCACGGCCGTCAGCCAGGTGATGGAGGCAGCGGTGGCGGGCAGG
CGGATCCTGGACACGCCACACCACACGCCGCCGAGATACAACACACCACC
GCCTCCACCGCCGGCTTACGGAATAGCCGGAACCACCGTTGTGGCGCCGA
CTTTGACACCGACACCAACTCCGAATCCGACGCCGTCGCAGATTCCCACG
CCCACGCCCAGCATGCCGGCCATCATTCGGGTGAAGGCTGAACCGGGACT
GGCGGCCGTGGCTGCCTCCTCGACGCAGACGCCGCCCGCTTCGCCCACCT
CGTCCACGAATATCTCGATATTCACCAAGACTGAAGCCTCGGTGGACGAC
CACTTTGCCAAGGCGCTGGGCGAAACTTGGAAGAAGCTGCAGGGCGGGCA
CAAGGAGTAGAGGAGGAGCAAGCGAGCAAATCACCCACCAACCCGCACAC
AACCCGATCCCGATCCCGATCCCAATTCCCAACAGAACTCAACACAACCC
AACCCAAAAGCAACCCCTGATCCTCAACGATTCAACTCAAGAGCTGTTTT
TATTATAAATATTTCAAACTACACAATTAACGTTTAAAGATCTCATGCTG
ATGTGAACGGAAATTCTTCAACTGCGAGTGTATTACAAGTTTCTGATATA
ATGATTTTATTGAATATTGATAACGGTTAGCGCGCGGATATAATTATATA
TATATATATATGAATATTTACATATATATGGATAAATGTGTATGACAAAG
TGTATACGTACAAGTGACAAAATTTTGTATTCTTAACGCTTAGTTGGTAG
AGACTAATCCTTAATAATATACCTATTAAACATAAGTAAACAATCCTAAG
AAAAAAAAAAAAAAAA

RE45537.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10741-RB 2082 CG10741-RB 138..2035 1..1898 9490 100 Plus
CG10741.a 1674 CG10741.a 70..1674 205..1809 8025 100 Plus
CG10741.b 1594 CG10741.b 69..1594 372..1897 7630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13491509..13492718 685..1898 5945 99.5 Plus
chr3L 24539361 chr3L 13491128..13491443 372..687 1550 99.4 Plus
chr3L 24539361 chr3L 13477019..13477222 1..204 1020 100 Plus
chr3L 24539361 chr3L 13477776..13477945 203..372 850 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13501280..13502493 685..1898 6070 100 Plus
3L 28110227 3L 13500899..13501214 372..687 1580 100 Plus
3L 28110227 3L 13486804..13487007 1..204 1020 100 Plus
3L 28110227 3L 13487561..13487730 203..372 850 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13494380..13495593 685..1898 6070 100 Plus
3L 28103327 3L 13493999..13494314 372..687 1580 100 Plus
3L 28103327 3L 13479904..13480107 1..204 1020 100 Plus
3L 28103327 3L 13480661..13480830 203..372 850 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:15:32 has no hits.

RE45537.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:16:36 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13477019..13477222 1..204 100 -> Plus
chr3L 13477778..13477945 205..372 100 -> Plus
chr3L 13491129..13491443 373..687 99 -> Plus
chr3L 13491512..13492311 688..1487 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:04:30 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1149 312..1460 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:52 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1149 312..1460 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:43 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1149 312..1460 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:22:04 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1149 312..1460 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:10 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 1..1149 312..1460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:04:29 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1809 1..1809 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:52 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1809 1..1809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:43 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 8..1904 1..1897 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:22:04 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1809 1..1809 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:10 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 8..1904 1..1897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:36 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13486804..13487007 1..204 100 -> Plus
3L 13487563..13487730 205..372 100 -> Plus
3L 13500900..13501214 373..687 100 -> Plus
3L 13501283..13502493 688..1900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:36 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13486804..13487007 1..204 100 -> Plus
3L 13487563..13487730 205..372 100 -> Plus
3L 13500900..13501214 373..687 100 -> Plus
3L 13501283..13502493 688..1900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:36 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13486804..13487007 1..204 100 -> Plus
3L 13487563..13487730 205..372 100 -> Plus
3L 13500900..13501214 373..687 100 -> Plus
3L 13501283..13502493 688..1900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:43 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13479904..13480107 1..204 100 -> Plus
arm_3L 13480663..13480830 205..372 100 -> Plus
arm_3L 13494000..13494314 373..687 100 -> Plus
arm_3L 13494383..13495593 688..1900 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:55:49 Download gff for RE45537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13494000..13494314 373..687 100 -> Plus
3L 13494383..13495593 688..1900 99   Plus
3L 13479904..13480107 1..204 100 -> Plus
3L 13480663..13480830 205..372 100 -> Plus

RE45537.pep Sequence

Translation from 311 to 1459

> RE45537.pep
METALDVLSRAATMVQNNPSEMRATSKVLTTTKWRRERRQRSAGYQPHEA
GNSERERERERDREDRDMDSPIDMSVTTGALKQRASPPPPYREPLPGTNY
AANSRPSVITQAPPKREPPEQAHSTDMAMCDIDEHFRRSLGENYAALFAK
KSPTPTPTPTPSPSGTPKQQVSPLAYGLPSSTSTAASQHYQQQRSPLAKS
GWVILEPESLQPELPPPQEEPLPLSLALHRTQTPPSPPPSATGSAPALPT
AVSQVMEAAVAGRRILDTPHHTPPRYNTPPPPPPAYGIAGTTVVAPTLTP
TPTPNPTPSQIPTPTPSMPAIIRVKAEPGLAAVAASSTQTPPASPTSSTN
ISIFTKTEASVDDHFAKALGETWKKLQGGHKE*

RE45537.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23470-PA 555 GF23470-PA 162..555 21..382 686 65.5 Plus
Dana\GF10943-PA 493 GF10943-PA 343..475 8..152 363 57.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15649-PA 545 GG15649-PA 171..545 20..382 1253 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14822-PA 416 GH14822-PA 1..416 1..382 723 50.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-PB 382 CG10741-PB 1..382 1..382 2011 100 Plus
Tgi-PA 535 CG10741-PA 173..535 20..382 1919 100 Plus
CG15021-PA 420 CG15021-PA 69..260 79..319 165 27.7 Plus
Jarid2-PD 2351 CG3654-PD 795..1114 53..357 161 26.4 Plus
CG15021-PA 420 CG15021-PA 57..206 155..319 159 32.4 Plus
CG15021-PA 420 CG15021-PA 151..386 87..349 153 26.1 Plus
CG15023-PC 168 CG15023-PC 56..151 207..316 148 35.1 Plus
CG15023-PD 169 CG15023-PD 57..152 207..316 148 35.1 Plus
CG15023-PB 169 CG15023-PB 57..152 207..316 148 35.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13928-PA 416 GI13928-PA 1..416 1..382 745 49.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22083-PA 407 GL22083-PA 1..407 1..382 892 68.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10535-PA 594 GA10535-PA 206..594 21..382 802 70.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25426-PA 534 GM25426-PA 170..534 20..382 1851 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14454-PA 549 GD14454-PA 185..549 20..382 1864 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13716-PA 392 GJ13716-PA 1..389 1..378 889 55.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17075-PA 568 GK17075-PA 140..551 5..377 703 59.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21976-PA 578 GE21976-PA 215..578 20..382 1224 95.1 Plus

RE45537.hyp Sequence

Translation from 311 to 1459

> RE45537.hyp
METALDVLSRAATMVQNNPSEMRATSKVLTTTKWRRERRQRSAGYQPHEA
GNSERERERERDREDRDMDSPIDMSVTTGALKQRASPPPPYREPLPGTNY
AANSRPSVITQAPPKREPPEQAHSTDMAMCDIDEHFRRSLGENYAALFAK
KSPTPTPTPTPSPSGTPKQQVSPLAYGLPSSTSTAASQHYQQQRSPLAKS
GWVILEPESLQPELPPPQEEPLPLSLALHRTQTPPSPPPSATGSAPALPT
AVSQVMEAAVAGRRILDTPHHTPPRYNTPPPPPPAYGIAGTTVVAPTLTP
TPTPNPTPSQIPTPTPSMPAIIRVKAEPGLAAVAASSTQTPPASPTSSTN
ISIFTKTEASVDDHFAKALGETWKKLQGGHKE*

RE45537.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-PB 382 CG10741-PB 1..382 1..382 2011 100 Plus
Tgi-PA 535 CG10741-PA 173..535 20..382 1919 100 Plus
CG15021-PA 420 CG15021-PA 69..260 79..319 165 27.7 Plus
Jarid2-PD 2351 CG3654-PD 795..1114 53..357 161 26.4 Plus
CG15021-PA 420 CG15021-PA 57..206 155..319 159 32.4 Plus
CG15021-PA 420 CG15021-PA 151..386 87..349 153 26.1 Plus
CG15023-PC 168 CG15023-PC 56..151 207..316 148 35.1 Plus