BDGP Sequence Production Resources |
Search the DGRC for RE45833
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 458 |
Well: | 33 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5676-RA |
Protein status: | RE45833.pep: gold |
Preliminary Size: | 620 |
Sequenced Size: | 784 |
Gene | Date | Evidence |
---|---|---|
CG5676 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5676 | 2002-06-10 | Blastp of sequenced clone |
CG5676 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5676 | 2008-04-29 | Release 5.5 accounting |
CG5676 | 2008-08-15 | Release 5.9 accounting |
CG5676 | 2008-12-18 | 5.12 accounting |
784 bp (784 high quality bases) assembled on 2002-06-10
GenBank Submission: BT011027
> RE45833.complete ATTGTGTTAAATTGACGTAAACTGGGCGGTCAGAATTTCGCATCTTAACG TCGACATCTAATTTTAAAAATGACTAATTATTCGGAAATTTTTAAGAAAG TTTTTAACGATATTGGCCAACGTTCAGCATATTCGCAGATGCTTATTGGC GTTTCATCAGGATGGGTCACAGGATATACGACAATGAAAATAGGCAAATT TGCTGCCTTTGCAGTTGGCGGCAGCATAATCTTGCTCGAAATCGCCCACC AAGAAGGACTTATAAAAATAAATTGGTCTAAGTTGGATAAGAGCGTGGAT AAGCTCGCCGATAAAGTGGAAGCCTCGCTGGGTCGTGAGAAGAACTGGAA GGATAAGACCGAAAGATATGTCGACAATCAATTAGACAGAGCTGAAAGCC TCCTAACCCGAAACGGCAAGAAAGTGGCGAAATGGTACACCAAACTGATT GGCGATGAAGAGGGTCCAAAAGTCAACGATCTGCACATATTTTTGGCATC ATTTTTCGGTGGCGTTGCCCTGGGCATTGCTACTGGATAAAAGAATTTTC CGATTGGCACAACAAAACATTTAAATACCATATGGTTATTACGAACAAAT CTCACTTAATAAAGTTACAAAAAAGGTAATTTAATCGAAAATCAATTGGT TCTTTCCCAAAACATCTCAACACTCTTCGGGTTTTCGATATCATTCGTTT TATTAAATTCTTAAACCTACTTATTTTACAGTCCATTTCGTTGAAAATAC ATATGTATGTGTAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5676-RA | 797 | CG5676-RA | 24..789 | 1..766 | 3830 | 100 | Plus |
CG5676.a | 685 | CG5676.a | 24..648 | 1..625 | 3125 | 100 | Plus |
Ror-RA | 2291 | Ror-RA | 2211..2291 | 766..686 | 405 | 100 | Minus |
CG5676.a | 685 | CG5676.a | 647..683 | 730..766 | 185 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10253462..10253872 | 766..356 | 2055 | 100 | Minus |
chr2L | 23010047 | chr2L | 10253934..10254127 | 357..164 | 970 | 100 | Minus |
chr2L | 23010047 | chr2L | 10254576..10254740 | 165..1 | 810 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10254606..10255016 | 766..356 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 10255078..10255271 | 357..164 | 970 | 100 | Minus |
2L | 23513712 | 2L | 10255720..10255884 | 165..1 | 825 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10254606..10255016 | 766..356 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 10255078..10255271 | 357..164 | 970 | 100 | Minus |
2L | 23513712 | 2L | 10255720..10255884 | 165..1 | 825 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 3094..3284 | 536..736 | 124 | 56.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10253460..10253870 | 358..768 | 99 | <- | Minus |
chr2L | 10253934..10254126 | 165..357 | 100 | <- | Minus |
chr2L | 10254577..10254740 | 1..164 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..471 | 70..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..471 | 70..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..471 | 70..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..471 | 70..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..471 | 70..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..766 | 1..768 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..762 | 1..762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 8..769 | 1..762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 1..766 | 1..768 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5676-RA | 8..769 | 1..762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10254604..10255014 | 358..768 | 99 | <- | Minus |
2L | 10255078..10255270 | 165..357 | 100 | <- | Minus |
2L | 10255721..10255884 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10254604..10255014 | 358..768 | 99 | <- | Minus |
2L | 10255078..10255270 | 165..357 | 100 | <- | Minus |
2L | 10255721..10255884 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10254604..10255014 | 358..768 | 99 | <- | Minus |
2L | 10255078..10255270 | 165..357 | 100 | <- | Minus |
2L | 10255721..10255884 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10254604..10255014 | 358..768 | 99 | <- | Minus |
arm_2L | 10255078..10255270 | 165..357 | 100 | <- | Minus |
arm_2L | 10255721..10255884 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10254604..10255014 | 358..768 | 99 | <- | Minus |
2L | 10255078..10255270 | 165..357 | 100 | <- | Minus |
2L | 10255721..10255884 | 1..164 | 100 | Minus |
Translation from 69 to 539
> RE45833.hyp MTNYSEIFKKVFNDIGQRSAYSQMLIGVSSGWVTGYTTMKIGKFAAFAVG GSIILLEIAHQEGLIKINWSKLDKSVDKLADKVEASLGREKNWKDKTERY VDNQLDRAESLLTRNGKKVAKWYTKLIGDEEGPKVNDLHIFLASFFGGVA LGIATG*
Translation from 69 to 539
> RE45833.pep MTNYSEIFKKVFNDIGQRSAYSQMLIGVSSGWVTGYTTMKIGKFAAFAVG GSIILLEIAHQEGLIKINWSKLDKSVDKLADKVEASLGREKNWKDKTERY VDNQLDRAESLLTRNGKKVAKWYTKLIGDEEGPKVNDLHIFLASFFGGVA LGIATG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14125-PA | 156 | GF14125-PA | 1..156 | 1..156 | 757 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23963-PA | 156 | GG23963-PA | 1..156 | 1..156 | 789 | 97.4 | Plus |
Dere\GG25089-PA | 121 | GG25089-PA | 1..67 | 12..78 | 134 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13545-PA | 157 | GH13545-PA | 1..157 | 1..156 | 568 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5676-PA | 156 | CG5676-PA | 1..156 | 1..156 | 802 | 100 | Plus |
CG12511-PB | 131 | CG12511-PB | 6..67 | 7..68 | 139 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19196-PA | 157 | GI19196-PA | 1..156 | 1..155 | 533 | 63.5 | Plus |
Dmoj\GI17557-PA | 126 | GI17557-PA | 11..110 | 12..117 | 134 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18968-PA | 157 | GL18968-PA | 1..157 | 1..156 | 588 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19050-PA | 157 | GA19050-PA | 1..156 | 1..155 | 584 | 69.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11901-PA | 156 | GM11901-PA | 1..156 | 1..156 | 803 | 98.7 | Plus |
Dsec\GM18565-PA | 121 | GM18565-PA | 1..57 | 12..68 | 135 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22288-PA | 156 | GD22288-PA | 1..156 | 1..156 | 803 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17529-PA | 157 | GJ17529-PA | 1..157 | 1..156 | 547 | 66.2 | Plus |
Dvir\GJ15573-PA | 136 | GJ15573-PA | 11..120 | 12..117 | 148 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18998-PA | 155 | GK18998-PA | 3..154 | 5..155 | 471 | 57.9 | Plus |
Dwil\GK19026-PA | 135 | GK19026-PA | 4..71 | 3..72 | 146 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26263-PA | 156 | GE26263-PA | 1..156 | 1..156 | 788 | 96.8 | Plus |