Clone RE46159 Report

Search the DGRC for RE46159

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:461
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG14968-RA
Protein status:RE46159.pep: gold
Preliminary Size:600
Sequenced Size:950

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14968 2001-12-17 Blastp of sequenced clone
CG14968 2002-01-01 Sim4 clustering to Release 2
CG14968 2003-01-01 Sim4 clustering to Release 3
CG14968 2008-04-29 Release 5.5 accounting
CG14968 2008-08-15 Release 5.9 accounting
CG14968 2008-12-18 5.12 accounting

Clone Sequence Records

RE46159.complete Sequence

950 bp (950 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071394

> RE46159.complete
AGTGGCGCGTTTACCGGCCGAGGAAACAGGTGTACAAAGAAACAAAGCCA
TCATAAAATCGTTGGTTTGCGGTGAATGCGTTCAACGGTGGATCTTCGCT
TGCACCTTTCGCGATAGACGACATACGGATGCAGATACAGCTACAGAATG
GCCTCCAACAACAGTAGTACCACCGATCTGGACAGCCAGGTCAATGTGGA
GGATTTGCCCATAACGTTCAAGGTGAAGTACATTGGTTCCGAAGTGGCAC
GTGGCTTATGGGGCATTAAGTATACGCGTCGTCCGGTGGACATAATGGTG
GGCGTGGCCAAGAACCTGCCGCCCAATAAGGTGCTGCCCAACTGCGAACT
GAAGGTGTCCACCGACGGAGTCCAGCTGGAGATCATATCGCCAAAGGCCA
GCATCAATCACTGGAGCTATCCCATCGACACGATCTCGTATGGCGTTCAG
GACCTGGTCTACACAAGGGTCTTTGCCATGATCGTGGTGAAGGACGAGTC
GAGTCCGCATCCCTTTGAGGTTCACGCCTTCGTGTGCGACAGTCGTGCGA
TGGCGCGGAAGTTGACCTTTGCCCTGGCCGCCGCCTTCCAGGATTACTCG
CGACGGGTCAAGGAGGCAACCGGTGAGGAGGAGGGCGAGGCCACGCCCAG
CGACACTATTACACCCACGCGACACAAGTTCGCCATCGATCTGCGAACGC
CGGAGGAAATCCAGGCTGGCGAACTGGAGCAAGAAACGGAGGCGTAGTTA
TCCTGGTGATCCTGCGTTGGCTCCGTCAATGAGATGTGATGTGTTAGTTA
CTTAACGTCCAGTGTTCACTGTATCTGTAAATTGTGGTTCTCTCACCTGG
TAGTTGCCTCATACAGCTAATTACCCAAAGCCTAAGTGTTAATACGATTT
GTAAACGATTTTCTAAAATAAATTACGAATATGGCAAAAAAAAAAAAAAA

RE46159.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RB 1115 CG14968-RB 124..1057 1..934 4625 99.6 Plus
CG14968-RC 1063 CG14968-RC 132..1005 61..934 4340 99.7 Plus
CG14968-RA 1104 CG14968-RA 218..1091 61..934 4340 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3298731..3299444 934..221 3555 99.9 Minus
chr3L 24539361 chr3L 3300110..3300275 226..61 815 99.4 Minus
chr3L 24539361 chr3L 3302450..3302510 61..1 260 95.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3299336..3300049 934..221 3555 99.9 Minus
3L 28110227 3L 3300719..3300884 226..61 815 99.4 Minus
3L 28110227 3L 3303048..3303108 61..1 290 98.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3299336..3300049 934..221 3555 99.8 Minus
3L 28103327 3L 3300719..3300884 226..61 815 99.3 Minus
3L 28103327 3L 3303048..3303108 61..1 290 98.3 Minus
Blast to na_te.dros performed on 2019-03-16 02:11:32 has no hits.

RE46159.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:12:59 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3298730..3299442 223..935 99 <- Minus
chr3L 3300114..3300274 62..222 99 <- Minus
chr3L 3302450..3302510 1..61 95   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:14 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 1..600 148..747 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:27 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 1..600 148..747 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:56 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 1..600 148..747 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:00:20 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 1..600 148..747 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:09 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RB 1..934 1..934 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:13 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RB 1..934 1..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:27 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RB 5..938 1..934 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:56 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RB 1..934 1..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:00:20 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RB 5..938 1..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:12:59 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3299335..3300047 223..935 99 <- Minus
3L 3300723..3300883 62..222 99 <- Minus
3L 3303048..3303108 1..61 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:12:59 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3299335..3300047 223..935 99 <- Minus
3L 3300723..3300883 62..222 99 <- Minus
3L 3303048..3303108 1..61 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:12:59 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3299335..3300047 223..935 99 <- Minus
3L 3300723..3300883 62..222 99 <- Minus
3L 3303048..3303108 1..61 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:27 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3299335..3300047 223..935 99 <- Minus
arm_3L 3300723..3300883 62..222 99 <- Minus
arm_3L 3303048..3303108 1..61 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:59 Download gff for RE46159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3299335..3300047 223..935 99 <- Minus
3L 3300723..3300883 62..222 99 <- Minus
3L 3303048..3303108 1..61 98   Minus

RE46159.pep Sequence

Translation from 147 to 746

> RE46159.pep
MASNNSSTTDLDSQVNVEDLPITFKVKYIGSEVARGLWGIKYTRRPVDIM
VGVAKNLPPNKVLPNCELKVSTDGVQLEIISPKASINHWSYPIDTISYGV
QDLVYTRVFAMIVVKDESSPHPFEVHAFVCDSRAMARKLTFALAAAFQDY
SRRVKEATGEEEGEATPSDTITPTRHKFAIDLRTPEEIQAGELEQETEA*

RE46159.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24376-PA 199 GF24376-PA 1..199 1..199 1000 94.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14267-PA 199 GG14267-PA 1..199 1..199 1049 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15704-PA 210 GH15704-PA 21..210 10..199 903 88.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PA 199 CG14968-PA 1..199 1..199 1023 100 Plus
CG14968-PE 199 CG14968-PE 1..199 1..199 1023 100 Plus
CG14968-PD 199 CG14968-PD 1..199 1..199 1023 100 Plus
CG14968-PC 199 CG14968-PC 1..199 1..199 1023 100 Plus
CG14968-PB 199 CG14968-PB 1..199 1..199 1023 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12757-PA 211 GI12757-PA 18..211 9..199 939 90.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13393-PA 200 GA13393-PA 15..200 9..199 883 86.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14060-PA 199 GM14060-PA 1..199 1..199 1042 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13335-PA 199 GD13335-PA 1..199 1..199 1038 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15524-PA 202 GJ15524-PA 3..202 2..199 948 89 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16607-PA 213 GK16607-PA 8..213 4..199 905 84.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20694-PA 199 GE20694-PA 1..199 1..199 1046 98 Plus

RE46159.hyp Sequence

Translation from 147 to 746

> RE46159.hyp
MASNNSSTTDLDSQVNVEDLPITFKVKYIGSEVARGLWGIKYTRRPVDIM
VGVAKNLPPNKVLPNCELKVSTDGVQLEIISPKASINHWSYPIDTISYGV
QDLVYTRVFAMIVVKDESSPHPFEVHAFVCDSRAMARKLTFALAAAFQDY
SRRVKEATGEEEGEATPSDTITPTRHKFAIDLRTPEEIQAGELEQETEA*

RE46159.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PA 199 CG14968-PA 1..199 1..199 1023 100 Plus
CG14968-PE 199 CG14968-PE 1..199 1..199 1023 100 Plus
CG14968-PD 199 CG14968-PD 1..199 1..199 1023 100 Plus
CG14968-PC 199 CG14968-PC 1..199 1..199 1023 100 Plus
CG14968-PB 199 CG14968-PB 1..199 1..199 1023 100 Plus