Clone RE46204 Report

Search the DGRC for RE46204

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:462
Well:4
Vector:pFlc-1
Associated Gene/TranscriptHph-RB
Protein status:RE46204.pep: gold
Sequenced Size:1914

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31543 2002-10-29 Blastp of sequenced clone
CG31543 2003-01-01 Sim4 clustering to Release 3
Hph 2008-04-29 Release 5.5 accounting
Hph 2008-08-15 Release 5.9 accounting
Hph 2008-12-18 5.12 accounting

Clone Sequence Records

RE46204.complete Sequence

1914 bp (1914 high quality bases) assembled on 2002-10-29

GenBank Submission: BT001659

> RE46204.complete
ATTCAGAAAACGAACGGCGACGAGTGCGGTTCGGTTCAGCTGCTTCACAT
TTCACTTAAATTAGTTAACCGAAGCTGAGTAATACACAAACGTGACTAAC
TGTGCATAAACAAAGTCAAATCAAAACAAACATCTGCCAGTGAAACAAAG
CGAAAAGTGAAATATATAGGCAGCCGGCCCCAACAAATGCAAACTGCAAT
AATACGTACCTCCCCACCAACACATTTGCACCTATATACCATATAATATA
ACCGCCGGTTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCATCAGCG
ACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGATGGAG
ACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCAGGAGC
CTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACCCGCGG
TGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTGGCAAT
GAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGACTCTGT
GGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAACTACC
ACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGATCGGGA
ACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGCGTTAT
AACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAGTGGCG
GCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATATTGAG
CCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAATCCCCA
CGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTGGTACT
TCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGGAAAAC
AGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCTGAACC
AGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATCCAGTC
TGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATGTGTCG
AGTAATTCCTGCGCCACCAGCAGCGAAATATGCACGTAACCCAAGCCGAC
AGCGCAGCTAAAGGCAACCAAAAAGTGTAAATTATTTTCAACCAAACACA
CATGTATAAAGCTAGTTAAAAACTATTTATAGCTTCGGAGGGGCGGCAGC
GCAAGCCCGCATTGCGAAAGTTAATCAAAGCTCCTTTAGTCGTTAAGCCT
TCTAGTTTAGTCTCTAAGTCGTACCCTTAGTCATTTTCGCATTAACCATT
AGCTTACTGCCATGTCAGCGTCCGAGTTGGTTGTTTATTAATTTTAGTTT
GTTGCATCTTTGTCAGGACCTTTTGCCTAGCTCATTCTTAGTTTTTGGCT
GCCAAAGTATTATACCTAAAGAGAAGTTAACTAGATTCAATAACATAAGC
AACTGTCGCGACGCTCATTGCATCTTATCTCAAAATTATTTAACAAGCCA
GTAAATCGTGGACAAACGCGGTCACTGGCTAACACTCAATCTGTCGACTC
TCATGCATCTTGTTAGACATCTTTTTCATATCGTTTACATCTAATAACAA
ACGGAAATAAATGTTTGTCCAAATACGTTCTCTTGTTATCTGTAAATCAT
GAAGTATGTATATTTATGACATATCTACATATTGTATGTATATTTTTTAT
ATTAAACAAAAGCCTGAGCTGATGAACCACGTGTGGCCTACATTTGTCTA
CGTGGTTGTAGAGAGATGGATTTTATAAGTGGTTCTATTTGGTACAGAGC
TTAAAGATACTAATATTTTAAGGTTATTAAACTATTTTTATCTATCCGAA
AAAAAAAAAAAAAA

RE46204.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RB 1897 Hph-RB 1..1897 1..1897 9470 99.9 Plus
Hph-RA 2341 Hph-RA 721..2341 260..1880 8105 100 Plus
Hph-RC 2793 Hph-RC 1173..2793 260..1880 8105 100 Plus
Hph-RA 2341 Hph-RA 27..285 1..259 1280 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1093125..1094262 760..1897 5690 100 Plus
chr3R 27901430 chr3R 1092417..1092696 260..539 1400 100 Plus
chr3R 27901430 chr3R 1090608..1090866 1..259 1280 99.6 Plus
chr3R 27901430 chr3R 1092926..1093066 620..760 705 100 Plus
chr3R 27901430 chr3R 1092781..1092866 536..621 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5268602 760..1901 5695 99.9 Plus
3R 32079331 3R 5266753..5267032 260..539 1400 100 Plus
3R 32079331 3R 5264944..5265202 1..259 1280 99.6 Plus
3R 32079331 3R 5267262..5267402 620..760 705 100 Plus
3R 32079331 3R 5267117..5267202 536..621 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5008292..5009433 760..1901 5695 99.9 Plus
3R 31820162 3R 5007584..5007863 260..539 1400 100 Plus
3R 31820162 3R 5005775..5006033 1..259 1280 99.6 Plus
3R 31820162 3R 5008093..5008233 620..760 705 100 Plus
3R 31820162 3R 5007948..5008033 536..621 430 100 Plus
Blast to na_te.dros performed 2019-03-16 19:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1110..1233 1101..1231 135 60.9 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 5767..5842 1450..1377 122 65.8 Minus

RE46204.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:16:43 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1090608..1090866 1..259 99 -> Plus
chr3R 1092417..1092696 260..539 100 -> Plus
chr3R 1092785..1092865 540..620 100 -> Plus
chr3R 1092927..1093066 621..760 100 -> Plus
chr3R 1093126..1094262 761..1898 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:18:38 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 99..978 260..1139 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:47 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 99..978 260..1139 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:52 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 99..978 260..1139 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:59:44 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 99..978 260..1139 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:28 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 99..978 260..1139 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:29:24 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 1..1774 1..1774 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:47 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 1..1774 1..1774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:52 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 6..262 1..257 99 -> Plus
Hph-RA 698..2337 258..1897 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:59:45 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 1..1774 1..1774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:28 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 6..262 1..257 99 -> Plus
Hph-RA 698..2337 258..1897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:43 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5264944..5265202 1..259 99 -> Plus
3R 5266753..5267032 260..539 100 -> Plus
3R 5267121..5267201 540..620 100 -> Plus
3R 5267263..5267402 621..760 100 -> Plus
3R 5267462..5268598 761..1898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:43 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5264944..5265202 1..259 99 -> Plus
3R 5266753..5267032 260..539 100 -> Plus
3R 5267121..5267201 540..620 100 -> Plus
3R 5267263..5267402 621..760 100 -> Plus
3R 5267462..5268598 761..1898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:43 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5264944..5265202 1..259 99 -> Plus
3R 5266753..5267032 260..539 100 -> Plus
3R 5267121..5267201 540..620 100 -> Plus
3R 5267263..5267402 621..760 100 -> Plus
3R 5267462..5268598 761..1898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:52 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092843..1092923 540..620 100 -> Plus
arm_3R 1092985..1093124 621..760 100 -> Plus
arm_3R 1090666..1090924 1..259 99 -> Plus
arm_3R 1092475..1092754 260..539 100 -> Plus
arm_3R 1093184..1094320 761..1898 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:10 Download gff for RE46204.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5005775..5006033 1..259 99 -> Plus
3R 5007584..5007863 260..539 100 -> Plus
3R 5007952..5008032 540..620 100 -> Plus
3R 5008094..5008233 621..760 100 -> Plus
3R 5008293..5009429 761..1898 99   Plus

RE46204.hyp Sequence

Translation from 302 to 1138

> RE46204.hyp
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICT*

RE46204.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PB 278 CG44015-PB 1..278 1..278 1468 100 Plus
Hph-PA 325 CG44015-PA 48..325 1..278 1468 100 Plus
Hph-PD 478 CG44015-PD 201..478 1..278 1468 100 Plus
Hph-PC 478 CG44015-PC 201..478 1..278 1468 100 Plus

RE46204.pep Sequence

Translation from 302 to 1138

> RE46204.pep
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICT*

RE46204.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18932-PA 334 GF18932-PA 48..334 1..278 1239 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12715-PA 325 GG12715-PA 48..325 1..278 1481 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17757-PA 462 GH17757-PA 183..462 1..278 1165 83.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PD 478 CG44015-PD 201..478 1..278 1468 100 Plus
Hph-PC 478 CG44015-PC 201..478 1..278 1468 100 Plus
Hph-PA 325 CG44015-PA 48..325 1..278 1468 100 Plus
Hph-PB 278 CG44015-PB 1..278 1..278 1468 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22545-PA 459 GI22545-PA 180..459 1..278 1273 84.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21637-PA 304 GL21637-PA 189..296 1..106 549 94.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16313-PB 347 GA16313-PB 48..347 1..278 1287 86 Plus
Dpse\GA16313-PA 488 GA16313-PA 189..488 1..278 1287 86 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10798-PA 325 GM10798-PA 48..325 1..278 1499 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19772-PA 325 GD19772-PA 48..325 1..278 1499 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10149-PA 473 GJ10149-PA 181..473 1..278 1253 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12967-PA 493 GK12967-PA 188..433 1..237 1087 85 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25458-PA 325 GE25458-PA 48..325 1..278 1454 96.4 Plus
Dyak\GE14665-PA 60 GE14665-PA 3..60 221..278 183 82.8 Plus