BDGP Sequence Production Resources |
Search the DGRC for RE46204
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 462 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Hph-RB |
Protein status: | RE46204.pep: gold |
Sequenced Size: | 1914 |
Gene | Date | Evidence |
---|---|---|
CG31543 | 2002-10-29 | Blastp of sequenced clone |
CG31543 | 2003-01-01 | Sim4 clustering to Release 3 |
Hph | 2008-04-29 | Release 5.5 accounting |
Hph | 2008-08-15 | Release 5.9 accounting |
Hph | 2008-12-18 | 5.12 accounting |
1914 bp (1914 high quality bases) assembled on 2002-10-29
GenBank Submission: BT001659
> RE46204.complete ATTCAGAAAACGAACGGCGACGAGTGCGGTTCGGTTCAGCTGCTTCACAT TTCACTTAAATTAGTTAACCGAAGCTGAGTAATACACAAACGTGACTAAC TGTGCATAAACAAAGTCAAATCAAAACAAACATCTGCCAGTGAAACAAAG CGAAAAGTGAAATATATAGGCAGCCGGCCCCAACAAATGCAAACTGCAAT AATACGTACCTCCCCACCAACACATTTGCACCTATATACCATATAATATA ACCGCCGGTTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCATCAGCG ACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGATGGAG ACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCAGGAGC CTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACCCGCGG TGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTGGCAAT GAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGACTCTGT GGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAACTACC ACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGATCGGGA ACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGCGTTAT AACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAGTGGCG GCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATATTGAG CCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAATCCCCA CGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTGGTACT TCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGGAAAAC AGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCTGAACC AGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATCCAGTC TGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATGTGTCG AGTAATTCCTGCGCCACCAGCAGCGAAATATGCACGTAACCCAAGCCGAC AGCGCAGCTAAAGGCAACCAAAAAGTGTAAATTATTTTCAACCAAACACA CATGTATAAAGCTAGTTAAAAACTATTTATAGCTTCGGAGGGGCGGCAGC GCAAGCCCGCATTGCGAAAGTTAATCAAAGCTCCTTTAGTCGTTAAGCCT TCTAGTTTAGTCTCTAAGTCGTACCCTTAGTCATTTTCGCATTAACCATT AGCTTACTGCCATGTCAGCGTCCGAGTTGGTTGTTTATTAATTTTAGTTT GTTGCATCTTTGTCAGGACCTTTTGCCTAGCTCATTCTTAGTTTTTGGCT GCCAAAGTATTATACCTAAAGAGAAGTTAACTAGATTCAATAACATAAGC AACTGTCGCGACGCTCATTGCATCTTATCTCAAAATTATTTAACAAGCCA GTAAATCGTGGACAAACGCGGTCACTGGCTAACACTCAATCTGTCGACTC TCATGCATCTTGTTAGACATCTTTTTCATATCGTTTACATCTAATAACAA ACGGAAATAAATGTTTGTCCAAATACGTTCTCTTGTTATCTGTAAATCAT GAAGTATGTATATTTATGACATATCTACATATTGTATGTATATTTTTTAT ATTAAACAAAAGCCTGAGCTGATGAACCACGTGTGGCCTACATTTGTCTA CGTGGTTGTAGAGAGATGGATTTTATAAGTGGTTCTATTTGGTACAGAGC TTAAAGATACTAATATTTTAAGGTTATTAAACTATTTTTATCTATCCGAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hph-RB | 1897 | Hph-RB | 1..1897 | 1..1897 | 9470 | 99.9 | Plus |
Hph-RA | 2341 | Hph-RA | 721..2341 | 260..1880 | 8105 | 100 | Plus |
Hph-RC | 2793 | Hph-RC | 1173..2793 | 260..1880 | 8105 | 100 | Plus |
Hph-RA | 2341 | Hph-RA | 27..285 | 1..259 | 1280 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1093125..1094262 | 760..1897 | 5690 | 100 | Plus |
chr3R | 27901430 | chr3R | 1092417..1092696 | 260..539 | 1400 | 100 | Plus |
chr3R | 27901430 | chr3R | 1090608..1090866 | 1..259 | 1280 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 1092926..1093066 | 620..760 | 705 | 100 | Plus |
chr3R | 27901430 | chr3R | 1092781..1092866 | 536..621 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5267461..5268602 | 760..1901 | 5695 | 99.9 | Plus |
3R | 32079331 | 3R | 5266753..5267032 | 260..539 | 1400 | 100 | Plus |
3R | 32079331 | 3R | 5264944..5265202 | 1..259 | 1280 | 99.6 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 620..760 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 536..621 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5008292..5009433 | 760..1901 | 5695 | 99.9 | Plus |
3R | 31820162 | 3R | 5007584..5007863 | 260..539 | 1400 | 100 | Plus |
3R | 31820162 | 3R | 5005775..5006033 | 1..259 | 1280 | 99.6 | Plus |
3R | 31820162 | 3R | 5008093..5008233 | 620..760 | 705 | 100 | Plus |
3R | 31820162 | 3R | 5007948..5008033 | 536..621 | 430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1090608..1090866 | 1..259 | 99 | -> | Plus |
chr3R | 1092417..1092696 | 260..539 | 100 | -> | Plus |
chr3R | 1092785..1092865 | 540..620 | 100 | -> | Plus |
chr3R | 1092927..1093066 | 621..760 | 100 | -> | Plus |
chr3R | 1093126..1094262 | 761..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RA | 99..978 | 260..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RA | 99..978 | 260..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RA | 99..978 | 260..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RA | 99..978 | 260..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RA | 99..978 | 260..1139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RB | 1..1774 | 1..1774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RB | 1..1774 | 1..1774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RA | 6..262 | 1..257 | 99 | -> | Plus |
Hph-RA | 698..2337 | 258..1897 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RB | 1..1774 | 1..1774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RA | 6..262 | 1..257 | 99 | -> | Plus |
Hph-RA | 698..2337 | 258..1897 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5264944..5265202 | 1..259 | 99 | -> | Plus |
3R | 5266753..5267032 | 260..539 | 100 | -> | Plus |
3R | 5267121..5267201 | 540..620 | 100 | -> | Plus |
3R | 5267263..5267402 | 621..760 | 100 | -> | Plus |
3R | 5267462..5268598 | 761..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5264944..5265202 | 1..259 | 99 | -> | Plus |
3R | 5266753..5267032 | 260..539 | 100 | -> | Plus |
3R | 5267121..5267201 | 540..620 | 100 | -> | Plus |
3R | 5267263..5267402 | 621..760 | 100 | -> | Plus |
3R | 5267462..5268598 | 761..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5264944..5265202 | 1..259 | 99 | -> | Plus |
3R | 5266753..5267032 | 260..539 | 100 | -> | Plus |
3R | 5267121..5267201 | 540..620 | 100 | -> | Plus |
3R | 5267263..5267402 | 621..760 | 100 | -> | Plus |
3R | 5267462..5268598 | 761..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1092843..1092923 | 540..620 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 621..760 | 100 | -> | Plus |
arm_3R | 1090666..1090924 | 1..259 | 99 | -> | Plus |
arm_3R | 1092475..1092754 | 260..539 | 100 | -> | Plus |
arm_3R | 1093184..1094320 | 761..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5005775..5006033 | 1..259 | 99 | -> | Plus |
3R | 5007584..5007863 | 260..539 | 100 | -> | Plus |
3R | 5007952..5008032 | 540..620 | 100 | -> | Plus |
3R | 5008094..5008233 | 621..760 | 100 | -> | Plus |
3R | 5008293..5009429 | 761..1898 | 99 | Plus |
Translation from 302 to 1138
> RE46204.hyp MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL PVSMSTGTGALNANVSSNSCATSSEICT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hph-PB | 278 | CG44015-PB | 1..278 | 1..278 | 1468 | 100 | Plus |
Hph-PA | 325 | CG44015-PA | 48..325 | 1..278 | 1468 | 100 | Plus |
Hph-PD | 478 | CG44015-PD | 201..478 | 1..278 | 1468 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 201..478 | 1..278 | 1468 | 100 | Plus |
Translation from 302 to 1138
> RE46204.pep MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL PVSMSTGTGALNANVSSNSCATSSEICT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18932-PA | 334 | GF18932-PA | 48..334 | 1..278 | 1239 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12715-PA | 325 | GG12715-PA | 48..325 | 1..278 | 1481 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17757-PA | 462 | GH17757-PA | 183..462 | 1..278 | 1165 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hph-PD | 478 | CG44015-PD | 201..478 | 1..278 | 1468 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 201..478 | 1..278 | 1468 | 100 | Plus |
Hph-PA | 325 | CG44015-PA | 48..325 | 1..278 | 1468 | 100 | Plus |
Hph-PB | 278 | CG44015-PB | 1..278 | 1..278 | 1468 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22545-PA | 459 | GI22545-PA | 180..459 | 1..278 | 1273 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21637-PA | 304 | GL21637-PA | 189..296 | 1..106 | 549 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16313-PB | 347 | GA16313-PB | 48..347 | 1..278 | 1287 | 86 | Plus |
Dpse\GA16313-PA | 488 | GA16313-PA | 189..488 | 1..278 | 1287 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10798-PA | 325 | GM10798-PA | 48..325 | 1..278 | 1499 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19772-PA | 325 | GD19772-PA | 48..325 | 1..278 | 1499 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10149-PA | 473 | GJ10149-PA | 181..473 | 1..278 | 1253 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12967-PA | 493 | GK12967-PA | 188..433 | 1..237 | 1087 | 85 | Plus |