Clone RE46214 Report

Search the DGRC for RE46214

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:462
Well:14
Vector:pFlc-1
Associated Gene/TranscriptIce2-RC
Protein status:RE46214.pep: gold
Preliminary Size:2245
Sequenced Size:2362

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10825 2002-10-12 Blastp of sequenced clone
CG10825 2008-04-29 Release 5.5 accounting
CG10825 2008-08-15 Release 5.9 accounting
CG10825 2008-12-18 5.12 accounting

Clone Sequence Records

RE46214.complete Sequence

2362 bp (2362 high quality bases) assembled on 2002-10-12

GenBank Submission: BT001660

> RE46214.complete
ATTCTCAATAAAATAATATCGAAGTGCAAACGGCCCCAACAGGTTCCTAA
ATAAACGTTTCCTCATTTATTTTATTTACTTTTTAAAATATGCGAGCTTG
AAATGGAAATATACCAAACATTATGCACTGCAGCTTATCAACCAATGAAT
AGACTTCGCTTTAGACACAAGTTCCTCCCGATGCGAAGTTGTACGAAGGA
AATGCTCTATTCCGAAACCAGCCGTCGTACAAGGTGTTCAATAAATCCTT
CGAGCACGTGGACGATGCGCTGTACACATCGCTGAACGAAGTGGAGCCAG
ATGTACTGCGAATGGAGCTCCAGGAAACGGGCGATCTCTTTAAGTCGTTC
AATCGCAACTCGGCCTTGAGGGATCCGCGCAACAACGAGGTGCCACCGAA
ACCGACTCGCGACCTCACCACCGCCAGTTCACTCTACAGCTTTCCCAATC
CCCTGGAGCAATACTCGGAGCTGAATCTTAAGCAACAGGCCGCCTGCATG
CGAGTGCTCCTCGCCTGGCAATGCAGTCAACCCGTCGATGAGCAGGACAT
CGTGGTGTGGCAGGCAACGGAAAAGAAGCGATACAACGAGCAGCAGCGTG
TGCAGAAATACATACACGACCACGAGCAAGGACGCAAGGAAGTCATCTAC
GCGCCCATGAAGAGCCTGGTGGCGGTCTACAGAAAGTGCTGCCCCAGTGC
AGGAGTCTCAATGCTCAGACCGCCAGCATAGAGCAGGTGGAGCTGGAGCG
GATTGTCGGTCGGGTAAGACTCTTGCCAGAGGTGGAAGTTCGCCATGAAG
CCCTGCGGACATTACGACTGCGCTTGGATCGCTATGCGACGAGAGAAACA
AGGGCTCCTGTGCAGCTATTGCGGGAGGAAGACAAGGAACTGGAACTCGA
AGCTGGCAACGTCTTCGTGCTGCCCCTAGACTCGCTGTTAATGCTCCTTA
CCACCGGATCCTATATTGACCTGCCCACCGAAATGTTTCTCAGCCTAAGA
GAATCGCCAAACAGCAAGCACAAGTGCATGGAGTTCCAGTCGCCATTCCC
CCCCCGCAACTGTGGTTGGCATACGAACAGTTTGATCTTGAAACTGGCTT
ATGGAGCCTACATTTCACAGCCCGGACAAGCCAAGTGGCTGGATTTCAAT
ATAAATGGAGCAGTCAAGGAGGTGCCAGATGAGCCTGCCTGTGATAAGTC
ATCCATCGATCTGCAGATGGTCTACAAGCCTCGCGCAATCGATCAGCAAC
CATCAGACATTGAAGATGGCAACTGCAATAGCGCCTTGGTTAGTTGGACC
CTTAGATGTAAAGGCGAAGGCGATGATTGCAACGATTTTCAAATCTTTAG
CACACTATCCATACCAGCAGTTAAGGATTCCAGCGGCAAGGAACCACTTG
GATGCCACTTCATTAAGCTGGAGAACAAGCCAGACTGCGGTTGCGAAATA
ATGTCCAAATACGAGTTGATAAGCGCCTGGGTGCAGTTAAAGCTAATGCG
GGCAGAGATGGGACACTGCACACGCATCTCGCTACGGGATTTTGAGCCAA
TGCTGGAGGAGAAGCTGACGTTAATTTCGCTGGAGCAGCAGCTTCATGAC
TATTATAACACAAGTATGCCGCAGCTACTGTCCAACTTGTGTGAGTTTTT
GAAGCTGCTGGACACGGTACCCGCTGGAGATTACCTGCTGCGATACTCAC
CCAAGTACAAGGATAAGTTCCTGCTGTGCATTGTCACCAAGGAGGCCACG
CCACAGAGTTTTCAGCTACACCAGCTCCTCACGGAATCCATCCCCAGCGA
CCAAGCCTTCCTTACGCAAAGCAGCTACCTTCCGATCTCGCCCACTCTTT
GTGGCCGCCTGCACGAGGAGCTCCATCTACTGCCCTGTGCATTTCCAGCA
AAAGCCAACGGTCGCTCTGTCCAGCGTCGAAAGGTGGTGGTGCCCATACC
AGAGCCCTCCAGACAAGCTCCAGTAAGACGGCAACGTTTAAAAAAGTGGA
GCGAAGCCCAAACTCGAGAATTTCGACGTCGATGTAAGGTGGATCAAAAG
AAAAGAGCTCGGGCTCGCAAGACAGCAGCGGCCAACAAAGAAAAAATAGA
GCTGGAGAAGATTATGACGTTGTAAAAACCGCACTCTGATTGCATAAGTT
GATTACTATTAGGGATGTAGTTACTAACTGTTACAAAACCAAAAGGTGAT
CCCCATAGTGGAGTTAACCGCTCGGCGTAAGGATAAGAGTTAAGTTTATA
TTGTTATGTATCGGAATAATAAAAATTGAACGCGGTGCTTGTGGCGCGAG
CAACAAAGTTTTGATACATTTTGAGATGCACCAGAATTTACACTCATAAA
AAAAAAAAAAAA

RE46214.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10825-RC 2347 CG10825-RC 1..2347 1..2347 11720 99.9 Plus
CG10825-RB 2394 CG10825-RB 764..2394 688..2318 8155 100 Plus
CG10825-RA 2427 CG10825-RA 808..2427 688..2307 8100 100 Plus
CG10825-RB 2394 CG10825-RB 1..688 1..688 3425 99.8 Plus
CG10825-RA 2427 CG10825-RA 224..732 180..688 2530 99.8 Plus
CG10825-RA 2427 CG10825-RA 1..145 36..180 725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16954909..16956568 688..2347 8015 98.9 Plus
chr3R 27901430 chr3R 16954325..16954833 180..688 2410 98.2 Plus
chr3R 27901430 chr3R 16954067..16954246 1..180 870 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21131061..21132721 688..2348 8305 100 Plus
3R 32079331 3R 21130477..21130985 180..688 2530 99.8 Plus
3R 32079331 3R 21130219..21130398 1..180 900 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20871892..20873552 688..2348 8305 100 Plus
3R 31820162 3R 20871308..20871816 180..688 2530 99.8 Plus
3R 31820162 3R 20871050..20871229 1..180 900 100 Plus
Blast to na_te.dros performed 2019-03-16 07:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 753..814 618..556 123 70.3 Minus

RE46214.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:27:48 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16954067..16954245 1..179 98 -> Plus
chr3R 16954325..16954833 180..688 98 -> Plus
chr3R 16954910..16956568 689..2347 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:18:39 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RB 1..377 312..688 100 -> Plus
CG10825-RB 454..1890 689..2125 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:11:29 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RB 1..377 312..688 100 -> Plus
CG10825-RB 454..1890 689..2125 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:31:16 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RB 1..377 312..688 100 -> Plus
Ice2-RB 454..1890 689..2125 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:02:20 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RB 1..377 312..688 100 -> Plus
CG10825-RB 454..1890 689..2125 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:32:50 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RA 34..542 180..688 99 -> Plus
Ice2-RA 619..2055 689..2125 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:33:15 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RC 1..2347 1..2347 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:11:29 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RC 1..2347 1..2347 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:16 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RC 1..2347 1..2347 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:02:21 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RC 1..2347 1..2347 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:32:50 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RC 4..2350 1..2347 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:48 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21130219..21130397 1..179 100 -> Plus
3R 21130477..21130985 180..688 99 -> Plus
3R 21131062..21132720 689..2347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:48 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21130219..21130397 1..179 100 -> Plus
3R 21130477..21130985 180..688 99 -> Plus
3R 21131062..21132720 689..2347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:48 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21130219..21130397 1..179 100 -> Plus
3R 21130477..21130985 180..688 99 -> Plus
3R 21131062..21132720 689..2347 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:16 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16955941..16956119 1..179 100 -> Plus
arm_3R 16956199..16956707 180..688 99 -> Plus
arm_3R 16956784..16958442 689..2347 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:02 Download gff for RE46214.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20871308..20871816 180..688 99 -> Plus
3R 20871893..20873551 689..2347 100   Plus
3R 20871050..20871228 1..179 100 -> Plus

RE46214.pep Sequence

Translation from 940 to 2124

> RE46214.pep
MLLTTGSYIDLPTEMFLSLRESPNSKHKCMEFQSPFPPRNCGWHTNSLIL
KLAYGAYISQPGQAKWLDFNINGAVKEVPDEPACDKSSIDLQMVYKPRAI
DQQPSDIEDGNCNSALVSWTLRCKGEGDDCNDFQIFSTLSIPAVKDSSGK
EPLGCHFIKLENKPDCGCEIMSKYELISAWVQLKLMRAEMGHCTRISLRD
FEPMLEEKLTLISLEQQLHDYYNTSMPQLLSNLCEFLKLLDTVPAGDYLL
RYSPKYKDKFLLCIVTKEATPQSFQLHQLLTESIPSDQAFLTQSSYLPIS
PTLCGRLHEELHLLPCAFPAKANGRSVQRRKVVVPIPEPSRQAPVRRQRL
KKWSEAQTREFRRRCKVDQKKRARARKTAAANKEKIELEKIMTL*

RE46214.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16500-PA 667 GF16500-PA 284..667 4..394 1233 60.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24399-PA 678 GG24399-PA 288..678 4..394 1859 90.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17292-PA 659 GH17292-PA 289..607 6..331 933 57.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ice2-PC 394 CG10825-PC 1..394 1..394 2086 100 Plus
Ice2-PA 684 CG10825-PA 291..684 1..394 2086 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23872-PA 669 GI23872-PA 290..669 6..394 835 45.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12008-PA 669 GL12008-PA 276..669 1..394 1248 59.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10581-PA 669 GA10581-PA 276..669 1..394 1246 59.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15068-PA 675 GM15068-PA 286..675 4..394 1902 93.1 Plus
Dsec\GM13640-PA 223 GM13640-PA 1..223 171..394 1019 92.4 Plus
Dsec\GM13639-PA 403 GM13639-PA 294..399 4..109 555 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19400-PA 676 GD19400-PA 286..676 4..394 1921 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23962-PA 671 GJ23962-PA 288..671 4..394 960 51.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19181-PA 621 GK19181-PA 240..621 5..394 745 46.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25710-PA 676 GE25710-PA 286..676 4..394 1909 89.3 Plus

RE46214.hyp Sequence

Translation from 940 to 2124

> RE46214.hyp
MLLTTGSYIDLPTEMFLSLRESPNSKHKCMEFQSPFPPRNCGWHTNSLIL
KLAYGAYISQPGQAKWLDFNINGAVKEVPDEPACDKSSIDLQMVYKPRAI
DQQPSDIEDGNCNSALVSWTLRCKGEGDDCNDFQIFSTLSIPAVKDSSGK
EPLGCHFIKLENKPDCGCEIMSKYELISAWVQLKLMRAEMGHCTRISLRD
FEPMLEEKLTLISLEQQLHDYYNTSMPQLLSNLCEFLKLLDTVPAGDYLL
RYSPKYKDKFLLCIVTKEATPQSFQLHQLLTESIPSDQAFLTQSSYLPIS
PTLCGRLHEELHLLPCAFPAKANGRSVQRRKVVVPIPEPSRQAPVRRQRL
KKWSEAQTREFRRRCKVDQKKRARARKTAAANKEKIELEKIMTL*

RE46214.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ice2-PC 394 CG10825-PC 1..394 1..394 2086 100 Plus
Ice2-PA 684 CG10825-PA 291..684 1..394 2086 100 Plus