BDGP Sequence Production Resources |
Search the DGRC for RE46223
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 462 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | gus-RI |
Protein status: | RE46223.pep: gold |
Sequenced Size: | 1390 |
Gene | Date | Evidence |
---|---|---|
gus-RB | 2009-06-22 | Replacement based on scoring |
1390 bp assembled on 2009-08-05
GenBank Submission: BT089043.1
> RE46223.complete AAAGGTTCCTGAGTGATATTTTGCTTTATGTGTTGTTTTATTTTAATCAT AGCAAATCGACAAGATAAAAGTAATGTATAAGGGTGGTCGGACACCTTCT ATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTATATCCAC ACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGTTTGAAC GTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGATCCAGAAGC TGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAAAACAGT TAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATACCAAGAGAGT TGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTACTTGATATG CCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAACTCCGAAGA TCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGACATTTCATA GGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTCGGACTT ACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAGGCAAAGAGG AACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTACATTCAG TTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGCTGGGAC TTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGCGCTGGAGTGAC ATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAGATAAGT TCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCTTCATTGTTGAT CAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAAAAAACTATA TCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAACAATGCGTTACA TTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATCTTTGCCGAAGA ACAATTCGTCAAAAAATTGGTCGCACAAACTTGGAGGAGCACATTCAACA GCTTCAACTTCCTTTATCAATGAAAACATATTTATTGTATAAAAACCGTA GATAATAGTTTTGTTAAGTAGATGGAGGAGCAATTTCAATTTTTGCTGCA TGTGATGAAAGCAGCAAATACTAATTGTGTTAGATTATAATAGTATTAGA TCAATGTTTGTCTGTCCTCCAACAGGAAAATCATAGGTATACAATTCGTA ATAATACTTTACTTAAGCTATAAAGATTGATTGTATATTAAGAAGCATTC AAATAATAGTATGTACACGGAATGACATCTCATCTTGCAATAAATTGGAG AATCGAGTTTCTTCATGTAACATTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gus.f | 2004 | gus.f | 212..1586 | 1..1375 | 6875 | 100 | Plus |
gus.a | 1816 | gus.a | 332..1633 | 74..1375 | 6510 | 100 | Plus |
gus.h | 1976 | gus.h | 332..1633 | 74..1375 | 6510 | 100 | Plus |
gus.a | 1816 | gus.a | 31..108 | 1..78 | 390 | 100 | Plus |
gus.h | 1976 | gus.h | 31..108 | 1..78 | 390 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 1008241..1009134 | 965..72 | 4425 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 1004883..1005291 | 1374..966 | 2030 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 1015689..1015766 | 78..1 | 390 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 1004883..1005291 | 966..1374 | 99 | <- | Minus |
chr2R | 1008241..1009130 | 76..965 | 99 | <- | Minus |
chr2R | 1015692..1015766 | 1..75 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RB | 1..1032 | 74..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RB | 1..1032 | 74..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RK | 1..840 | 266..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RK | 1..840 | 266..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RB | 13..1386 | 1..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RB | 13..1386 | 1..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RH | 22..1395 | 1..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RH | 22..1395 | 1..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5128226..5128300 | 1..75 | 100 | Minus | |
2R | 5117394..5117802 | 966..1374 | 100 | <- | Minus |
2R | 5120763..5121652 | 76..965 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5128226..5128300 | 1..75 | 100 | Minus | |
2R | 5117394..5117802 | 966..1374 | 100 | <- | Minus |
2R | 5120763..5121652 | 76..965 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5128226..5128300 | 1..75 | 100 | Minus | |
2R | 5117394..5117802 | 966..1374 | 100 | <- | Minus |
2R | 5120763..5121652 | 76..965 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 1004899..1005307 | 966..1374 | 100 | <- | Minus |
arm_2R | 1008268..1009157 | 76..965 | 100 | <- | Minus |
arm_2R | 1015731..1015805 | 1..75 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5118593..5119001 | 966..1374 | 100 | <- | Minus |
2R | 5121962..5122851 | 76..965 | 100 | <- | Minus |
2R | 5129425..5129499 | 1..75 | 100 | Minus |
Translation from 73 to 1104
> RE46223.hyp MYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERLRLSYKI AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKP ARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQST DCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVG STEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMD EGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLDPEP LPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gus-PM | 279 | CG2944-PM | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PL | 279 | CG2944-PL | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PK | 279 | CG2944-PK | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PJ | 279 | CG2944-PJ | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PI | 279 | CG2944-PI | 1..279 | 65..343 | 1486 | 100 | Plus |
Translation from 73 to 1104
> RE46223.pep MYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERLRLSYKI AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKP ARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQST DCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVG STEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMD EGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLDPEP LPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12960-PA | 255 | GF12960-PA | 81..250 | 120..294 | 388 | 45.7 | Plus |
Dana\GF15713-PA | 304 | GF15713-PA | 74..279 | 121..337 | 229 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23140-PA | 349 | GG23140-PA | 8..349 | 2..343 | 1817 | 99.1 | Plus |
Dere\GG22511-PA | 255 | GG22511-PA | 81..250 | 120..294 | 387 | 45.7 | Plus |
Dere\GG25044-PA | 301 | GG25044-PA | 56..271 | 111..337 | 240 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13013-PA | 349 | GH13013-PA | 8..349 | 2..343 | 1726 | 92.4 | Plus |
Dgri\GH21169-PA | 252 | GH21169-PA | 78..247 | 120..294 | 395 | 46.9 | Plus |
Dgri\GH11484-PA | 283 | GH11484-PA | 36..256 | 106..337 | 231 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gus-PM | 279 | CG2944-PM | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PL | 279 | CG2944-PL | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PK | 279 | CG2944-PK | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PJ | 279 | CG2944-PJ | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PI | 279 | CG2944-PI | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PH | 279 | CG2944-PH | 1..279 | 65..343 | 1486 | 100 | Plus |
gus-PG | 279 | CG2944-PG | 1..279 | 65..343 | 1486 | 100 | Plus |
Fsn-PA | 255 | CG4643-PA | 81..250 | 120..294 | 394 | 45.7 | Plus |
Fsn-PB | 255 | CG4643-PB | 81..250 | 120..294 | 394 | 45.7 | Plus |
SP555-PD | 293 | CG14041-PD | 19..271 | 50..337 | 238 | 28.2 | Plus |
SP555-PB | 293 | CG14041-PB | 19..271 | 50..337 | 238 | 28.2 | Plus |
SP555-PC | 301 | CG14041-PC | 19..271 | 50..337 | 238 | 28.2 | Plus |
SP555-PA | 301 | CG14041-PA | 19..271 | 50..337 | 238 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18267-PA | 349 | GI18267-PA | 8..349 | 2..343 | 1730 | 92.7 | Plus |
Dmoj\GI18764-PA | 252 | GI18764-PA | 78..247 | 120..294 | 396 | 46.3 | Plus |
Dmoj\GI16979-PA | 316 | GI16979-PA | 85..290 | 121..337 | 209 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15433-PA | 349 | GL15433-PA | 8..349 | 2..343 | 1777 | 96.2 | Plus |
Dper\GL10506-PA | 255 | GL10506-PA | 81..250 | 120..294 | 393 | 46.9 | Plus |
Dper\GL26545-PA | 292 | GL26545-PA | 51..270 | 113..337 | 227 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23998-PA | 349 | GA23998-PA | 8..349 | 2..343 | 1777 | 96.2 | Plus |
Dpse\GA18323-PA | 255 | GA18323-PA | 81..250 | 120..294 | 393 | 46.9 | Plus |
Dpse\GA12721-PA | 292 | GA12721-PA | 51..270 | 113..337 | 227 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26734-PA | 349 | GM26734-PA | 8..349 | 2..343 | 1827 | 100 | Plus |
Dsec\GM20297-PA | 255 | GM20297-PA | 62..250 | 102..294 | 389 | 43.3 | Plus |
Dsec\GM18519-PA | 301 | GM18519-PA | 56..271 | 111..337 | 239 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16681-PA | 349 | GD16681-PA | 8..349 | 2..343 | 1827 | 100 | Plus |
Dsim\GD25778-PA | 245 | GD25778-PA | 81..240 | 120..294 | 331 | 41.7 | Plus |
Dsim\GD12021-PA | 301 | GD12021-PA | 56..271 | 111..337 | 240 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21895-PA | 349 | GJ21895-PA | 8..349 | 2..343 | 1731 | 92.4 | Plus |
Dvir\GJ21788-PA | 252 | GJ21788-PA | 78..247 | 120..294 | 393 | 46.3 | Plus |
Dvir\GJ17226-PA | 299 | GJ17226-PA | 53..272 | 107..337 | 226 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14868-PA | 349 | GK14868-PA | 8..349 | 2..343 | 1756 | 94.7 | Plus |
Dwil\GK22006-PA | 255 | GK22006-PA | 81..250 | 120..294 | 389 | 46.3 | Plus |
Dwil\GK24858-PA | 301 | GK24858-PA | 64..276 | 111..337 | 219 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\gus-PA | 349 | GE11348-PA | 8..349 | 2..343 | 1814 | 98.8 | Plus |
Dyak\GE13381-PA | 255 | GE13381-PA | 81..250 | 120..294 | 381 | 45.1 | Plus |
Dyak\GE11313-PA | 303 | GE11313-PA | 58..273 | 111..337 | 235 | 28.3 | Plus |