BDGP Sequence Production Resources |
Search the DGRC for RE46349
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 463 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Tina-1-RA |
Protein status: | RE46349.pep: gold |
Sequenced Size: | 926 |
Gene | Date | Evidence |
---|---|---|
CG2803 | 2004-01-14 | Blastp of sequenced clone |
Tina-1 | 2008-04-29 | Release 5.5 accounting |
Tina-1 | 2008-08-15 | Release 5.9 accounting |
Tina-1 | 2008-12-18 | 5.12 accounting |
926 bp (926 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011448
> RE46349.complete AGTTGGAGTTTTGCTGGCCATCGGCGCGGTTGTATCTCTGCTGGAGCTCG TGCACACTATCCTATCCAATCCCGAAGAGCTCTCTCGCCTTTGCTTAGTG CAGCAATTTGCAATTTTAATTATCTGCAGGCGGTTCGACAAGAAAATGGG CCAAGCAAAGAAAGTCTCCTCCGCCTTGAGCAAGCTCTTCGTGTACGGCG CCCTCAAGTACGGACAGCCCAGCAACTCAATCCTGGCCAGCTCTGGCAAC GGCTTCGCTAAGTTCTGGTGCAAGGCGACCACCACCCAAAAGCTGCCGCT AGTGATCGCCACCCGCTACAACATTCCCTTCCTGCTGAACAAGCCCGGAG TGGGATATTACGTAACAGGGGAGATCTACGAGGTGGACGATCGAATGCTG AATTCCCTGGACAACCTGGAGGATTGCGAGGAGATCTACACTCGCGAGAT GCACGATATGAACATTGGCGTTGGAGAAGGAACCGTTCCATGCTGGGTGT ACCTGCTGCAGAAGTACCCGGAGAACCTACTTAGTCTGCGCTACTTGTCC AGCTACGAGAACTCAACCACCCATCCATACATTATGCGCCATCGCCGCAC CCACAAGCATCCGGCCCAGGACGACCTCACCTACGAGGCCCAGAACTAAT AACGTGGGTTGTGGTGTCGCCCGTTTGTTTGGATGTTCTCTGGATAGCCT GGCCACTAATCTTATGTTACCGTAGTTGCATTTTAAGACCGTACTTGCAG ACGCAGATGTACTGATCGATATATACCCGTATATATGGGCAAACGATATA AACTGATACATATGTACCATACGCATTATTTAGGTTTTAGCAAACGTAGT CTGTAATTTGATAGTTTTCGACAAACAAAGCAAATAAACTGAAGCAATTT AAAATAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tina-1-RA | 1044 | Tina-1-RA | 90..1003 | 1..914 | 4555 | 99.8 | Plus |
Tina-1.a | 1759 | Tina-1.a | 963..1718 | 159..914 | 3765 | 99.8 | Plus |
Tina-1-RB | 1607 | Tina-1-RB | 811..1566 | 159..914 | 3765 | 99.8 | Plus |
Tina-1.a | 1759 | Tina-1.a | 1..156 | 5..160 | 780 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20826580..20827009 | 909..480 | 2120 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 20827076..20827397 | 480..159 | 1610 | 100 | Minus |
chr2R | 21145070 | chr2R | 20828204..20828363 | 160..1 | 785 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24940621..24941055 | 914..480 | 2160 | 99.8 | Minus |
2R | 25286936 | 2R | 24941122..24941443 | 480..159 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 24942250..24942409 | 160..1 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24941820..24942254 | 914..480 | 2160 | 99.7 | Minus |
2R | 25260384 | 2R | 24942321..24942642 | 480..159 | 1610 | 100 | Minus |
2R | 25260384 | 2R | 24943449..24943608 | 160..1 | 800 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20826579..20827008 | 481..910 | 99 | <- | Minus |
chr2R | 20827076..20827395 | 161..480 | 100 | <- | Minus |
chr2R | 20828204..20828363 | 1..160 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..504 | 146..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..504 | 146..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..504 | 146..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..504 | 146..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..504 | 146..649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..909 | 1..910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..909 | 1..910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 5..913 | 1..910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 1..909 | 1..910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tina-1-RA | 5..913 | 1..910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24940625..24941054 | 481..910 | 99 | <- | Minus |
2R | 24941122..24941441 | 161..480 | 100 | <- | Minus |
2R | 24942250..24942409 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24940625..24941054 | 481..910 | 99 | <- | Minus |
2R | 24941122..24941441 | 161..480 | 100 | <- | Minus |
2R | 24942250..24942409 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24940625..24941054 | 481..910 | 99 | <- | Minus |
2R | 24941122..24941441 | 161..480 | 100 | <- | Minus |
2R | 24942250..24942409 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20828148..20828577 | 481..910 | 99 | <- | Minus |
arm_2R | 20828645..20828964 | 161..480 | 100 | <- | Minus |
arm_2R | 20829773..20829932 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24941842..24942271 | 481..910 | 99 | <- | Minus |
2R | 24942339..24942658 | 161..480 | 100 | <- | Minus |
2R | 24943467..24943626 | 1..160 | 100 | Minus |
Translation from 0 to 648
> RE46349.hyp VGVLLAIGAVVSLLELVHTILSNPEELSRLCLVQQFAILIICRRFDKKMG QAKKVSSALSKLFVYGALKYGQPSNSILASSGNGFAKFWCKATTTQKLPL VIATRYNIPFLLNKPGVGYYVTGEIYEVDDRMLNSLDNLEDCEEIYTREM HDMNIGVGEGTVPCWVYLLQKYPENLLSLRYLSSYENSTTHPYIMRHRRT HKHPAQDDLTYEAQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tina-1-PA | 167 | CG2803-PA | 1..167 | 49..215 | 893 | 100 | Plus |
Tina-1-PB | 84 | CG2803-PB | 1..84 | 132..215 | 462 | 100 | Plus |
CG2811-PA | 157 | CG2811-PA | 2..157 | 52..211 | 336 | 43.8 | Plus |
CG2811-PB | 157 | CG2811-PB | 2..141 | 52..193 | 320 | 44.4 | Plus |
CG2811-PC | 151 | CG2811-PC | 3..135 | 60..193 | 319 | 44.8 | Plus |
Translation from 145 to 648
> RE46349.pep MGQAKKVSSALSKLFVYGALKYGQPSNSILASSGNGFAKFWCKATTTQKL PLVIATRYNIPFLLNKPGVGYYVTGEIYEVDDRMLNSLDNLEDCEEIYTR EMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRYLSSYENSTTHPYIMRHR RTHKHPAQDDLTYEAQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11524-PA | 167 | GF11524-PA | 1..167 | 1..167 | 836 | 92.2 | Plus |
Dana\GF11525-PA | 153 | GF11525-PA | 2..153 | 9..163 | 371 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19875-PA | 167 | GG19875-PA | 1..167 | 1..167 | 900 | 99.4 | Plus |
Dere\GG19876-PA | 157 | GG19876-PA | 1..141 | 1..145 | 323 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22048-PA | 167 | GH22048-PA | 2..167 | 5..167 | 764 | 83.1 | Plus |
Dgri\GH22049-PA | 156 | GH22049-PA | 4..156 | 10..163 | 370 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tina-1-PA | 167 | CG2803-PA | 1..167 | 1..167 | 893 | 100 | Plus |
Tina-1-PB | 84 | CG2803-PB | 1..84 | 84..167 | 462 | 100 | Plus |
CG2811-PA | 157 | CG2811-PA | 2..157 | 4..163 | 336 | 43.8 | Plus |
CG2811-PB | 157 | CG2811-PB | 2..141 | 4..145 | 320 | 44.4 | Plus |
CG2811-PC | 151 | CG2811-PC | 3..135 | 12..145 | 319 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19134-PA | 168 | GI19134-PA | 1..165 | 1..165 | 824 | 89.7 | Plus |
Dmoj\GI19135-PA | 156 | GI19135-PA | 1..156 | 7..163 | 390 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10895-PA | 167 | GL10895-PA | 1..167 | 1..167 | 848 | 91.6 | Plus |
Dper\GL10896-PA | 153 | GL10896-PA | 3..153 | 12..163 | 337 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15466-PA | 167 | GA15466-PA | 1..167 | 1..167 | 848 | 91.6 | Plus |
Dpse\GA15469-PA | 153 | GA15469-PA | 3..153 | 12..163 | 351 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11776-PA | 167 | GM11776-PA | 1..167 | 1..167 | 902 | 99.4 | Plus |
Dsec\GM11777-PA | 157 | GM11777-PA | 2..141 | 4..145 | 324 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24906-PA | 167 | GD24906-PA | 1..167 | 1..167 | 904 | 100 | Plus |
Dsim\GD24907-PA | 157 | GD24907-PA | 2..141 | 4..145 | 322 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22267-PA | 168 | GJ22267-PA | 1..168 | 1..167 | 825 | 90.5 | Plus |
Dvir\GJ22268-PA | 156 | GJ22268-PA | 1..156 | 7..163 | 366 | 49.7 | Plus |