Clone RE46418 Report

Search the DGRC for RE46418

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:464
Well:18
Vector:pFlc-1
Associated Gene/TranscriptSlip1-RB
Protein status:RE46418.pep: gold
Sequenced Size:2512

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Slip1 2010-12-02 CDS novel splice

Clone Sequence Records

RE46418.complete Sequence

2512 bp assembled on 2011-02-18

GenBank Submission: BT126072.1

> RE46418.complete
GGTTTTGGCCACACTTTCGAAAAAATATGTATACAATTAAATGAAAATAA
ATATGAGTTTTGGATTTTAAGCATCACTATGAGTATTGCCGACGTGGAGT
ACGAATATGTTGTGTTAAAAATAAACGGTTACGATATTAGTCATTTGTCG
AGGTATGAAGCGGTTCAAAAGTTCCTTCAATCTAAAGAAACCCTTGTCGT
AGAAATACGCAGACAGAAACACAATGCATTAGATTTAGAATTAAAACATG
GCTCCAATGCCAAAATATCAAAAGTGGACAATCCCGGAGAACTTTCTGTC
CTAACTGACAAGTCAGCAGAAGGGACGATCACAGCTGCCAGTGCCTCTCA
ACAAATAAATTGCCCATCTTCAACATCGTTGAAAGAAATCGAGACGAAAA
CTCCTGTGGTTTTAACTCTTCGGGCTAGAAGTCATGAGGATCGTTTGGGA
AGTCTACAAGCCGCATCGAAGGAAACTCAAACCCAATCTGTCGTTGGTAC
GGACGTTTTAAAGGATAACGATTTGGTTAACACAATTACCGACAACTTCA
TAGAGCATGAACACCATTTGTTCGAACAATGCCTGGAACCGGAAATCGAC
ATTGAGGAAGACGATGATGACGAAGATATACATTTTGAGTATGCTAATAC
ATTTCTGCCAGATGACTATACAAATGTAGTGGATAAATTGGATAAGGTTT
TGTTAACTCACGTCAAGTCTTTGGAAGAACTATCCAATAAATCCGCCATG
CAATCTGACGAATGCTATCACATACCAGAAAAGAACTCATCTGATTCAAA
CGTTAAAATATCTTCTTTGGCGAAAAATATCATTGAGCAATCTACCAAGT
CCTGTAGTAAAATAAAGCTTCGACCGAATGCAAACTTGGATTATAAAAAA
AAATTCAATCTACCTTTAAGCCAAGAAGAAGTTCATCTGCAATATGAGTA
CGATGAAAGCGAGCACATTTACGAAACCATTCCAGAAGATTCTGAAAGTG
AACCAGTGTATTGTTCACCGTACCAACGTTCAAACGACAAGACGTCAATA
GGTTGTTCATCTCCAATAGCATCGAGACCGGCCGAATCATTAGAAAGAAC
AATGCAACAACAAACTCAAAGAGTCGCCCAGTGGTTGGGCTTGAAGCCAC
AATACCAGAAAACTAGACAAACTCTAGTTGGTCGACCCCCGCCGTTGAAA
TTAGTACAGCAACCTACTTGTAGTCGTGTTTTTACATTGCGTAGCACCTT
AACCAACACAAGCGCATCCAGCAGTAGTGGAGTGGCATACAGCTCTTATG
GACAAAATAATGTTGTTACAGGGAACGCCGCGGCTCCTGGCGAAGAGGTC
GATAACTCCTCAAGTGCCTACAACACTGGTGATTCTAATAATAGCGCCTC
CCCCCATCAAAATACTACAAATCCTGATGAAGCCATCGCCACTGGTCGCA
AGCTAGATAGTACTGTTATTGATAGCCCCAATGATCATTTGGATGCCACA
GGTGTAAGCACTATGTTGCTATTACCATTCGGCAAGTCTGGCCGTATTGG
TCTCTGCTCTTCCAATCTGCCTACAGCGTATGTCAGCGAGCGGTATACCA
ACGTTGGGTCTGAAAATGAAATTCATCCACTTAAAAGCGACATTGAAATA
CTAAGAGTTAAACCAACTGATGATTCCTATAGTCATTGTCCACAGTTTAA
CGCCCCAAATTTGAGTAGTTACCACTTTGTTAGTAGTCAAGAGGTTGCAA
ACAGATGTCATATTTCAACAAGCTTACAAAAAAATGCTACTTTGCTTAAC
GGTGAAAGTGCTGAGGAAATACCCATGGTATGGAAGGTTAAAAGGCGACC
AGATGGAACGCGGTACATAGTAAAACGGCCAGTACGTAATCGACCCCAAG
TTGCATTGCGGAAAAATATGCGTTACAACGAGGTTACCACGACGGAAGAC
GATACAATATCTGAAGTAAAAATAGGTCGTTATTGGACAAAAGAAGAACG
AAAGCGGCATATCGAACGAGCTCGAGAGAAGAGACATCATCAGACGCAGC
AACAGCAACAATAGCCACAGTAACATTTTCCTTTTGTACCATTTAAAACT
TACATAGCTTTAACAACAGTCTTAAGAACACTAATTGGATTTACTGTCGA
ACAATTTTATTTGATTGTTATGGTCGTCATCAAAACTTAAAGAGATTATC
AAGGTGCAAAAACAAGATTTGTCATAATTCCACTTTAAAATTTTATAATC
TAACATTTTTTGGTGTGTCCAAATTGAATTAAAACGTTGTTTTGGGGGTC
GTTATAAAATTCAAAAACTGTTCCTATACAAGTTATTTGTTAAAATAATC
CCTACAATGCGTATAGTCTTCGTTGATGCTGCCACGATTATTTACGGCAT
ATTACACATGTAATTAATGAAATACTTTCAGTTAGGTATAACATAATAAT
GCAAGTAATTCTAAGGTATTGTTTATCTAAAATAAAGAAATCGTGAACAA
AAAAAAAAAAAA

RE46418.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 686503..687486 605..1588 4905 99.9 Plus
chr4 1351717 chr4 689682..690438 1742..2498 3770 99.9 Plus
chr4 1351717 chr4 684409..684895 121..607 2435 100 Plus
chr4 1351717 chr4 688973..689130 1588..1745 790 100 Plus
chr4 1351717 chr4 688092..688349 742..1007 650 84.6 Plus
chr4 1351717 chr4 684180..684300 4..124 590 99.2 Plus
chr4 1351717 chr4 687984..688093 605..714 415 91.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 665949..666932 605..1588 4920 100 Plus
4 1348131 4 669128..669889 1742..2503 3810 100 Plus
4 1348131 4 663855..664341 121..607 2435 100 Plus
4 1348131 4 668419..668576 1588..1745 790 100 Plus
4 1348131 4 667538..667795 742..1007 650 84.6 Plus
4 1348131 4 663626..663746 4..124 590 99.2 Plus
4 1348131 4 667430..667539 605..714 415 91.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 665949..666932 605..1588 4920 100 Plus
4 1331231 4 669128..669889 1742..2503 3810 100 Plus
4 1331231 4 663855..664341 121..607 2435 100 Plus
4 1331231 4 668419..668576 1588..1745 790 100 Plus
4 1331231 4 667538..667744 742..947 650 88.4 Plus
4 1331231 4 663626..663746 4..124 590 99.1 Plus
4 1331231 4 667430..667539 605..714 415 91.8 Plus
4 1331231 4 667765..667795 977..1007 140 96.7 Plus
Blast to na_te.dros performed 2019-03-17 01:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6810 1994..2075 140 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6768 2035..2075 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6789 2035..2075 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6843 2035..2075 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2389 2027..2075 125 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2410 2035..2075 115 75.6 Plus

RE46418.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:44:02 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 688974..689128 1589..1743 100 -> Plus
chr4 684178..684296 1..120 99 -> Plus
chr4 684409..684894 121..606 100 -> Plus
chr4 686505..687486 607..1588 99 -> Plus
chr4 689684..690438 1744..2498 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-18 10:25:42 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
Slip1-RA 1..531 79..610 99 -> Plus
Slip1-RA 851..2304 611..2064 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:50:20 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
Slip1-RB 1..1986 79..2064 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:08:39 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
Slip1-RB 1..1986 79..2064 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:25:42 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
Slip1-RA 37..644 1..610 99 -> Plus
Slip1-RA 964..2851 611..2498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:50:20 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
Slip1-RB 4..2500 1..2498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:08:39 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
Slip1-RB 4..2500 1..2498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:44:02 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
4 663624..663742 1..120 99 -> Plus
4 663855..664340 121..606 100 -> Plus
4 665951..666932 607..1588 100 -> Plus
4 668420..668574 1589..1743 100 -> Plus
4 669130..669884 1744..2498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:44:02 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
4 663624..663742 1..120 99 -> Plus
4 663855..664340 121..606 100 -> Plus
4 665951..666932 607..1588 100 -> Plus
4 668420..668574 1589..1743 100 -> Plus
4 669130..669884 1744..2498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:44:02 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
4 663624..663742 1..120 99 -> Plus
4 663855..664340 121..606 100 -> Plus
4 665951..666932 607..1588 100 -> Plus
4 668420..668574 1589..1743 100 -> Plus
4 669130..669884 1744..2498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:50:20 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 684250..684368 1..120 99 -> Plus
arm_4 684481..684966 121..606 100 -> Plus
arm_4 686577..687558 607..1588 100 -> Plus
arm_4 689046..689200 1589..1743 100 -> Plus
arm_4 689756..690510 1744..2498 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:59:19 Download gff for RE46418.complete
Subject Subject Range Query Range Percent Splice Strand
4 663855..664340 121..606 100 -> Plus
4 665951..666932 607..1588 100 -> Plus
4 668420..668574 1589..1743 100 -> Plus
4 669130..669884 1744..2498 100   Plus
4 663624..663742 1..120 99 -> Plus

RE46418.pep Sequence

Translation from 0 to 2063

> RE46418.pep
GFGHTFEKICIQLNENKYEFWILSITMSIADVEYEYVVLKINGYDISHLS
RYEAVQKFLQSKETLVVEIRRQKHNALDLELKHGSNAKISKVDNPGELSV
LTDKSAEGTITAASASQQINCPSSTSLKEIETKTPVVLTLRARSHEDRLG
SLQAASKETQTQSVVGTDVLKDNDLVNTITDNFIEHEHHLFEQCLEPEID
IEEDDDDEDIHFEYANTFLPDDYTNVVDKLDKVLLTHVKSLEELSNKSAM
QSDECYHIPEKNSSDSNVKISSLAKNIIEQSTKSCSKIKLRPNANLDYKK
KFNLPLSQEEVHLQYEYDESEHIYETIPEDSESEPVYCSPYQRSNDKTSI
GCSSPIASRPAESLERTMQQQTQRVAQWLGLKPQYQKTRQTLVGRPPPLK
LVQQPTCSRVFTLRSTLTNTSASSSSGVAYSSYGQNNVVTGNAAAPGEEV
DNSSSAYNTGDSNNSASPHQNTTNPDEAIATGRKLDSTVIDSPNDHLDAT
GVSTMLLLPFGKSGRIGLCSSNLPTAYVSERYTNVGSENEIHPLKSDIEI
LRVKPTDDSYSHCPQFNAPNLSSYHFVSSQEVANRCHISTSLQKNATLLN
GESAEEIPMVWKVKRRPDGTRYIVKRPVRNRPQVALRKNMRYNEVTTTED
DTISEVKIGRYWTKEERKRHIERAREKRHHQTQQQQQ*

RE46418.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13793-PA 744 GF13793-PA 284..744 202..682 1043 50.4 Plus
Dana\GF13793-PA 744 GF13793-PA 7..179 31..203 307 47.5 Plus
Dana\GF18968-PA 303 GF18968-PA 170..303 546..682 291 50 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16397-PA 750 GG16397-PA 280..750 203..687 2157 84.8 Plus
Dere\GG16397-PA 750 GG16397-PA 1..174 29..203 712 81.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23937-PA 794 GH23937-PA 285..775 201..678 826 44.1 Plus
Dgri\GH23937-PA 794 GH23937-PA 10..165 32..203 246 40 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Slip1-PB 661 CG1783-PB 1..661 27..687 3412 100 Plus
Slip1-PA 767 CG1783-PA 283..767 203..687 2531 100 Plus
Slip1-PC 627 CG1783-PC 283..609 203..529 1695 100 Plus
Slip1-PA 767 CG1783-PA 1..177 27..203 886 100 Plus
Slip1-PC 627 CG1783-PC 1..177 27..203 886 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14063-PA 768 GI14063-PA 292..751 211..678 993 49.5 Plus
Dmoj\GI14063-PA 768 GI14063-PA 10..174 32..203 270 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18138-PA 807 GL18138-PA 318..807 211..685 1373 58.6 Plus
Dper\GL18138-PA 807 GL18138-PA 4..200 29..203 342 41.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14688-PA 790 GA14688-PA 301..790 211..685 1373 58.6 Plus
Dpse\GA14688-PA 790 GA14688-PA 4..183 29..203 362 45.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26808-PA 766 GM26808-PA 280..766 203..687 2358 93 Plus
Dsec\GM26808-PA 766 GM26808-PA 1..177 27..203 835 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22326-PA 191 GD22326-PA 1..176 27..202 854 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18580-PA 820 GJ18580-PA 294..806 211..678 986 50.1 Plus
Dvir\GJ18580-PA 820 GJ18580-PA 7..186 29..203 274 41.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13593-PA 807 GK13593-PA 291..800 211..680 1068 50.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14557-PA 765 GE14557-PA 284..765 203..687 2148 84.4 Plus
Dyak\GE14557-PA 765 GE14557-PA 1..178 27..203 716 80.3 Plus

RE46418.hyp Sequence

Translation from 2 to 2063

> RE46418.hyp
FGHTFEKICIQLNENKYEFWILSITMSIADVEYEYVVLKINGYDISHLSR
YEAVQKFLQSKETLVVEIRRQKHNALDLELKHGSNAKISKVDNPGELSVL
TDKSAEGTITAASASQQINCPSSTSLKEIETKTPVVLTLRARSHEDRLGS
LQAASKETQTQSVVGTDVLKDNDLVNTITDNFIEHEHHLFEQCLEPEIDI
EEDDDDEDIHFEYANTFLPDDYTNVVDKLDKVLLTHVKSLEELSNKSAMQ
SDECYHIPEKNSSDSNVKISSLAKNIIEQSTKSCSKIKLRPNANLDYKKK
FNLPLSQEEVHLQYEYDESEHIYETIPEDSESEPVYCSPYQRSNDKTSIG
CSSPIASRPAESLERTMQQQTQRVAQWLGLKPQYQKTRQTLVGRPPPLKL
VQQPTCSRVFTLRSTLTNTSASSSSGVAYSSYGQNNVVTGNAAAPGEEVD
NSSSAYNTGDSNNSASPHQNTTNPDEAIATGRKLDSTVIDSPNDHLDATG
VSTMLLLPFGKSGRIGLCSSNLPTAYVSERYTNVGSENEIHPLKSDIEIL
RVKPTDDSYSHCPQFNAPNLSSYHFVSSQEVANRCHISTSLQKNATLLNG
ESAEEIPMVWKVKRRPDGTRYIVKRPVRNRPQVALRKNMRYNEVTTTEDD
TISEVKIGRYWTKEERKRHIERAREKRHHQTQQQQQ*

RE46418.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Slip1-PB 661 CG1783-PB 1..661 26..686 3412 100 Plus
Slip1-PA 767 CG1783-PA 283..767 202..686 2531 100 Plus
Slip1-PC 627 CG1783-PC 283..609 202..528 1695 100 Plus
Slip1-PA 767 CG1783-PA 1..177 26..202 886 100 Plus
Slip1-PC 627 CG1783-PC 1..177 26..202 886 100 Plus