BDGP Sequence Production Resources |
Search the DGRC for RE46418
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 464 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Slip1-RB |
Protein status: | RE46418.pep: gold |
Sequenced Size: | 2512 |
Gene | Date | Evidence |
---|---|---|
Slip1 | 2010-12-02 | CDS novel splice |
2512 bp assembled on 2011-02-18
GenBank Submission: BT126072.1
> RE46418.complete GGTTTTGGCCACACTTTCGAAAAAATATGTATACAATTAAATGAAAATAA ATATGAGTTTTGGATTTTAAGCATCACTATGAGTATTGCCGACGTGGAGT ACGAATATGTTGTGTTAAAAATAAACGGTTACGATATTAGTCATTTGTCG AGGTATGAAGCGGTTCAAAAGTTCCTTCAATCTAAAGAAACCCTTGTCGT AGAAATACGCAGACAGAAACACAATGCATTAGATTTAGAATTAAAACATG GCTCCAATGCCAAAATATCAAAAGTGGACAATCCCGGAGAACTTTCTGTC CTAACTGACAAGTCAGCAGAAGGGACGATCACAGCTGCCAGTGCCTCTCA ACAAATAAATTGCCCATCTTCAACATCGTTGAAAGAAATCGAGACGAAAA CTCCTGTGGTTTTAACTCTTCGGGCTAGAAGTCATGAGGATCGTTTGGGA AGTCTACAAGCCGCATCGAAGGAAACTCAAACCCAATCTGTCGTTGGTAC GGACGTTTTAAAGGATAACGATTTGGTTAACACAATTACCGACAACTTCA TAGAGCATGAACACCATTTGTTCGAACAATGCCTGGAACCGGAAATCGAC ATTGAGGAAGACGATGATGACGAAGATATACATTTTGAGTATGCTAATAC ATTTCTGCCAGATGACTATACAAATGTAGTGGATAAATTGGATAAGGTTT TGTTAACTCACGTCAAGTCTTTGGAAGAACTATCCAATAAATCCGCCATG CAATCTGACGAATGCTATCACATACCAGAAAAGAACTCATCTGATTCAAA CGTTAAAATATCTTCTTTGGCGAAAAATATCATTGAGCAATCTACCAAGT CCTGTAGTAAAATAAAGCTTCGACCGAATGCAAACTTGGATTATAAAAAA AAATTCAATCTACCTTTAAGCCAAGAAGAAGTTCATCTGCAATATGAGTA CGATGAAAGCGAGCACATTTACGAAACCATTCCAGAAGATTCTGAAAGTG AACCAGTGTATTGTTCACCGTACCAACGTTCAAACGACAAGACGTCAATA GGTTGTTCATCTCCAATAGCATCGAGACCGGCCGAATCATTAGAAAGAAC AATGCAACAACAAACTCAAAGAGTCGCCCAGTGGTTGGGCTTGAAGCCAC AATACCAGAAAACTAGACAAACTCTAGTTGGTCGACCCCCGCCGTTGAAA TTAGTACAGCAACCTACTTGTAGTCGTGTTTTTACATTGCGTAGCACCTT AACCAACACAAGCGCATCCAGCAGTAGTGGAGTGGCATACAGCTCTTATG GACAAAATAATGTTGTTACAGGGAACGCCGCGGCTCCTGGCGAAGAGGTC GATAACTCCTCAAGTGCCTACAACACTGGTGATTCTAATAATAGCGCCTC CCCCCATCAAAATACTACAAATCCTGATGAAGCCATCGCCACTGGTCGCA AGCTAGATAGTACTGTTATTGATAGCCCCAATGATCATTTGGATGCCACA GGTGTAAGCACTATGTTGCTATTACCATTCGGCAAGTCTGGCCGTATTGG TCTCTGCTCTTCCAATCTGCCTACAGCGTATGTCAGCGAGCGGTATACCA ACGTTGGGTCTGAAAATGAAATTCATCCACTTAAAAGCGACATTGAAATA CTAAGAGTTAAACCAACTGATGATTCCTATAGTCATTGTCCACAGTTTAA CGCCCCAAATTTGAGTAGTTACCACTTTGTTAGTAGTCAAGAGGTTGCAA ACAGATGTCATATTTCAACAAGCTTACAAAAAAATGCTACTTTGCTTAAC GGTGAAAGTGCTGAGGAAATACCCATGGTATGGAAGGTTAAAAGGCGACC AGATGGAACGCGGTACATAGTAAAACGGCCAGTACGTAATCGACCCCAAG TTGCATTGCGGAAAAATATGCGTTACAACGAGGTTACCACGACGGAAGAC GATACAATATCTGAAGTAAAAATAGGTCGTTATTGGACAAAAGAAGAACG AAAGCGGCATATCGAACGAGCTCGAGAGAAGAGACATCATCAGACGCAGC AACAGCAACAATAGCCACAGTAACATTTTCCTTTTGTACCATTTAAAACT TACATAGCTTTAACAACAGTCTTAAGAACACTAATTGGATTTACTGTCGA ACAATTTTATTTGATTGTTATGGTCGTCATCAAAACTTAAAGAGATTATC AAGGTGCAAAAACAAGATTTGTCATAATTCCACTTTAAAATTTTATAATC TAACATTTTTTGGTGTGTCCAAATTGAATTAAAACGTTGTTTTGGGGGTC GTTATAAAATTCAAAAACTGTTCCTATACAAGTTATTTGTTAAAATAATC CCTACAATGCGTATAGTCTTCGTTGATGCTGCCACGATTATTTACGGCAT ATTACACATGTAATTAATGAAATACTTTCAGTTAGGTATAACATAATAAT GCAAGTAATTCTAAGGTATTGTTTATCTAAAATAAAGAAATCGTGAACAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 686503..687486 | 605..1588 | 4905 | 99.9 | Plus |
chr4 | 1351717 | chr4 | 689682..690438 | 1742..2498 | 3770 | 99.9 | Plus |
chr4 | 1351717 | chr4 | 684409..684895 | 121..607 | 2435 | 100 | Plus |
chr4 | 1351717 | chr4 | 688973..689130 | 1588..1745 | 790 | 100 | Plus |
chr4 | 1351717 | chr4 | 688092..688349 | 742..1007 | 650 | 84.6 | Plus |
chr4 | 1351717 | chr4 | 684180..684300 | 4..124 | 590 | 99.2 | Plus |
chr4 | 1351717 | chr4 | 687984..688093 | 605..714 | 415 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1348131 | 4 | 665949..666932 | 605..1588 | 4920 | 100 | Plus |
4 | 1348131 | 4 | 669128..669889 | 1742..2503 | 3810 | 100 | Plus |
4 | 1348131 | 4 | 663855..664341 | 121..607 | 2435 | 100 | Plus |
4 | 1348131 | 4 | 668419..668576 | 1588..1745 | 790 | 100 | Plus |
4 | 1348131 | 4 | 667538..667795 | 742..1007 | 650 | 84.6 | Plus |
4 | 1348131 | 4 | 663626..663746 | 4..124 | 590 | 99.2 | Plus |
4 | 1348131 | 4 | 667430..667539 | 605..714 | 415 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 665949..666932 | 605..1588 | 4920 | 100 | Plus |
4 | 1331231 | 4 | 669128..669889 | 1742..2503 | 3810 | 100 | Plus |
4 | 1331231 | 4 | 663855..664341 | 121..607 | 2435 | 100 | Plus |
4 | 1331231 | 4 | 668419..668576 | 1588..1745 | 790 | 100 | Plus |
4 | 1331231 | 4 | 667538..667744 | 742..947 | 650 | 88.4 | Plus |
4 | 1331231 | 4 | 663626..663746 | 4..124 | 590 | 99.1 | Plus |
4 | 1331231 | 4 | 667430..667539 | 605..714 | 415 | 91.8 | Plus |
4 | 1331231 | 4 | 667765..667795 | 977..1007 | 140 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6810 | 1994..2075 | 140 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6768 | 2035..2075 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6789 | 2035..2075 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6843 | 2035..2075 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2389 | 2027..2075 | 125 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2410 | 2035..2075 | 115 | 75.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 688974..689128 | 1589..1743 | 100 | -> | Plus |
chr4 | 684178..684296 | 1..120 | 99 | -> | Plus |
chr4 | 684409..684894 | 121..606 | 100 | -> | Plus |
chr4 | 686505..687486 | 607..1588 | 99 | -> | Plus |
chr4 | 689684..690438 | 1744..2498 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slip1-RA | 1..531 | 79..610 | 99 | -> | Plus |
Slip1-RA | 851..2304 | 611..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slip1-RB | 1..1986 | 79..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slip1-RB | 1..1986 | 79..2064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slip1-RA | 37..644 | 1..610 | 99 | -> | Plus |
Slip1-RA | 964..2851 | 611..2498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slip1-RB | 4..2500 | 1..2498 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slip1-RB | 4..2500 | 1..2498 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 663624..663742 | 1..120 | 99 | -> | Plus |
4 | 663855..664340 | 121..606 | 100 | -> | Plus |
4 | 665951..666932 | 607..1588 | 100 | -> | Plus |
4 | 668420..668574 | 1589..1743 | 100 | -> | Plus |
4 | 669130..669884 | 1744..2498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 663624..663742 | 1..120 | 99 | -> | Plus |
4 | 663855..664340 | 121..606 | 100 | -> | Plus |
4 | 665951..666932 | 607..1588 | 100 | -> | Plus |
4 | 668420..668574 | 1589..1743 | 100 | -> | Plus |
4 | 669130..669884 | 1744..2498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 663624..663742 | 1..120 | 99 | -> | Plus |
4 | 663855..664340 | 121..606 | 100 | -> | Plus |
4 | 665951..666932 | 607..1588 | 100 | -> | Plus |
4 | 668420..668574 | 1589..1743 | 100 | -> | Plus |
4 | 669130..669884 | 1744..2498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 684250..684368 | 1..120 | 99 | -> | Plus |
arm_4 | 684481..684966 | 121..606 | 100 | -> | Plus |
arm_4 | 686577..687558 | 607..1588 | 100 | -> | Plus |
arm_4 | 689046..689200 | 1589..1743 | 100 | -> | Plus |
arm_4 | 689756..690510 | 1744..2498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 663855..664340 | 121..606 | 100 | -> | Plus |
4 | 665951..666932 | 607..1588 | 100 | -> | Plus |
4 | 668420..668574 | 1589..1743 | 100 | -> | Plus |
4 | 669130..669884 | 1744..2498 | 100 | Plus | |
4 | 663624..663742 | 1..120 | 99 | -> | Plus |
Translation from 0 to 2063
> RE46418.pep GFGHTFEKICIQLNENKYEFWILSITMSIADVEYEYVVLKINGYDISHLS RYEAVQKFLQSKETLVVEIRRQKHNALDLELKHGSNAKISKVDNPGELSV LTDKSAEGTITAASASQQINCPSSTSLKEIETKTPVVLTLRARSHEDRLG SLQAASKETQTQSVVGTDVLKDNDLVNTITDNFIEHEHHLFEQCLEPEID IEEDDDDEDIHFEYANTFLPDDYTNVVDKLDKVLLTHVKSLEELSNKSAM QSDECYHIPEKNSSDSNVKISSLAKNIIEQSTKSCSKIKLRPNANLDYKK KFNLPLSQEEVHLQYEYDESEHIYETIPEDSESEPVYCSPYQRSNDKTSI GCSSPIASRPAESLERTMQQQTQRVAQWLGLKPQYQKTRQTLVGRPPPLK LVQQPTCSRVFTLRSTLTNTSASSSSGVAYSSYGQNNVVTGNAAAPGEEV DNSSSAYNTGDSNNSASPHQNTTNPDEAIATGRKLDSTVIDSPNDHLDAT GVSTMLLLPFGKSGRIGLCSSNLPTAYVSERYTNVGSENEIHPLKSDIEI LRVKPTDDSYSHCPQFNAPNLSSYHFVSSQEVANRCHISTSLQKNATLLN GESAEEIPMVWKVKRRPDGTRYIVKRPVRNRPQVALRKNMRYNEVTTTED DTISEVKIGRYWTKEERKRHIERAREKRHHQTQQQQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13793-PA | 744 | GF13793-PA | 284..744 | 202..682 | 1043 | 50.4 | Plus |
Dana\GF13793-PA | 744 | GF13793-PA | 7..179 | 31..203 | 307 | 47.5 | Plus |
Dana\GF18968-PA | 303 | GF18968-PA | 170..303 | 546..682 | 291 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16397-PA | 750 | GG16397-PA | 280..750 | 203..687 | 2157 | 84.8 | Plus |
Dere\GG16397-PA | 750 | GG16397-PA | 1..174 | 29..203 | 712 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23937-PA | 794 | GH23937-PA | 285..775 | 201..678 | 826 | 44.1 | Plus |
Dgri\GH23937-PA | 794 | GH23937-PA | 10..165 | 32..203 | 246 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Slip1-PB | 661 | CG1783-PB | 1..661 | 27..687 | 3412 | 100 | Plus |
Slip1-PA | 767 | CG1783-PA | 283..767 | 203..687 | 2531 | 100 | Plus |
Slip1-PC | 627 | CG1783-PC | 283..609 | 203..529 | 1695 | 100 | Plus |
Slip1-PA | 767 | CG1783-PA | 1..177 | 27..203 | 886 | 100 | Plus |
Slip1-PC | 627 | CG1783-PC | 1..177 | 27..203 | 886 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14063-PA | 768 | GI14063-PA | 292..751 | 211..678 | 993 | 49.5 | Plus |
Dmoj\GI14063-PA | 768 | GI14063-PA | 10..174 | 32..203 | 270 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18138-PA | 807 | GL18138-PA | 318..807 | 211..685 | 1373 | 58.6 | Plus |
Dper\GL18138-PA | 807 | GL18138-PA | 4..200 | 29..203 | 342 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14688-PA | 790 | GA14688-PA | 301..790 | 211..685 | 1373 | 58.6 | Plus |
Dpse\GA14688-PA | 790 | GA14688-PA | 4..183 | 29..203 | 362 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26808-PA | 766 | GM26808-PA | 280..766 | 203..687 | 2358 | 93 | Plus |
Dsec\GM26808-PA | 766 | GM26808-PA | 1..177 | 27..203 | 835 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22326-PA | 191 | GD22326-PA | 1..176 | 27..202 | 854 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18580-PA | 820 | GJ18580-PA | 294..806 | 211..678 | 986 | 50.1 | Plus |
Dvir\GJ18580-PA | 820 | GJ18580-PA | 7..186 | 29..203 | 274 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13593-PA | 807 | GK13593-PA | 291..800 | 211..680 | 1068 | 50.6 | Plus |
Translation from 2 to 2063
> RE46418.hyp FGHTFEKICIQLNENKYEFWILSITMSIADVEYEYVVLKINGYDISHLSR YEAVQKFLQSKETLVVEIRRQKHNALDLELKHGSNAKISKVDNPGELSVL TDKSAEGTITAASASQQINCPSSTSLKEIETKTPVVLTLRARSHEDRLGS LQAASKETQTQSVVGTDVLKDNDLVNTITDNFIEHEHHLFEQCLEPEIDI EEDDDDEDIHFEYANTFLPDDYTNVVDKLDKVLLTHVKSLEELSNKSAMQ SDECYHIPEKNSSDSNVKISSLAKNIIEQSTKSCSKIKLRPNANLDYKKK FNLPLSQEEVHLQYEYDESEHIYETIPEDSESEPVYCSPYQRSNDKTSIG CSSPIASRPAESLERTMQQQTQRVAQWLGLKPQYQKTRQTLVGRPPPLKL VQQPTCSRVFTLRSTLTNTSASSSSGVAYSSYGQNNVVTGNAAAPGEEVD NSSSAYNTGDSNNSASPHQNTTNPDEAIATGRKLDSTVIDSPNDHLDATG VSTMLLLPFGKSGRIGLCSSNLPTAYVSERYTNVGSENEIHPLKSDIEIL RVKPTDDSYSHCPQFNAPNLSSYHFVSSQEVANRCHISTSLQKNATLLNG ESAEEIPMVWKVKRRPDGTRYIVKRPVRNRPQVALRKNMRYNEVTTTEDD TISEVKIGRYWTKEERKRHIERAREKRHHQTQQQQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Slip1-PB | 661 | CG1783-PB | 1..661 | 26..686 | 3412 | 100 | Plus |
Slip1-PA | 767 | CG1783-PA | 283..767 | 202..686 | 2531 | 100 | Plus |
Slip1-PC | 627 | CG1783-PC | 283..609 | 202..528 | 1695 | 100 | Plus |
Slip1-PA | 767 | CG1783-PA | 1..177 | 26..202 | 886 | 100 | Plus |
Slip1-PC | 627 | CG1783-PC | 1..177 | 26..202 | 886 | 100 | Plus |