BDGP Sequence Production Resources |
Search the DGRC for RE46560
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 465 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1983-RA |
Protein status: | RE46560.pep: gold |
Preliminary Size: | 794 |
Sequenced Size: | 1129 |
Gene | Date | Evidence |
---|---|---|
CG1983 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1983 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1983 | 2003-01-22 | Blastp of sequenced clone |
CG1983 | 2008-04-29 | Release 5.5 accounting |
CG1983 | 2008-08-15 | Release 5.9 accounting |
CG1983 | 2008-12-18 | 5.12 accounting |
1129 bp (1129 high quality bases) assembled on 2003-01-22
GenBank Submission: BT003497
> RE46560.complete AGGTTTTGTTTTTATTTTTGCAAGGGCTGTTTCTTATCATTGAGTTAACC AATTTTAAATGCTAAGACGCACAATGGCGGAATTCGACGTCAAAGCCGGC CTGCAGCACGTGTTGAAGCGCATAGACGAGGTGCTCCTCCAGCGGCCCAA AGAAGTTCAAGCTGCCAGGCCGCTGCTCGTTGCTGTAAGCAAAACAAAGC CAGCGGAGGCCGTAATCGAGGCTTACGAGGGCGGACAAAGAGACTTCGGT GAGAACTATGTACAGGAGCTGGAGGAGAAGAGCCGCCACCCGGACATTCT GGCCAAGTGCCCCGACATCAGGTGGCACTTCATAGGCCACATGCAAAGCA ACAAGATCAACAAGATCCTTTCTGTGCCAAATCTGCATATGATCCAGACC GTAGATAGCGAGAAGTTGGCCACCAAACTGGACGCAGCCTGGTCTAAGCG ACAGCCCACCCCTGAGGAGCCATTGCAGGTGCTCATCCAGATCAACACTA GTGGTGAAGACGTTAAAAGCGGAATAGAGGCGAAAGATGCTCCTGCACTC TACCAGTACATCAAGAGCAACCTTAAACACCTCAACCTGATGGGCATAAT GACCATTGGTGCATTTGGTTTTGACTACAGCAATGGACCCAATCCGGATT TCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGCACTCCTTG GCCCCGGACTCGGTGCTCGTCTCCATGGGAATGTCCAACGACTTCGACAA GGCGATCGAAATGGGCAGCACAGTGGTGCGCGTTGGCTCTTCTATTTTCG GCCATCGGGCGGCCAAGGTGTAAGAAGGGGAGCGGAGCAGAGATGTGATA GGAATGCGTTGCGGGCACTGAATACAGCCGATTCCCAATGACGTCCGACC TCACGACTGAGCACCTCCAAGTTCGCTCATGTATCAGGTGGAACTGGGTA TATTCACACAGACTAACGTAGTAAATCAGCAAATCAAAGATGATTTGGCG TTTAAATTTAGAAACCCTTGAGATAAACAAATGTTATGTGTAGGCTGTTA TTTGCCTTATTTAATTGTTAACCCTTTATAAACAATGCTTCCAAAGTGTC AAAACCATTAAAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25998691..25999048 | 1111..754 | 1685 | 98 | Minus |
chr3R | 27901430 | chr3R | 25999105..25999347 | 754..512 | 1140 | 97.9 | Minus |
chr3R | 27901430 | chr3R | 25999639..25999851 | 364..152 | 1020 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 25999406..25999555 | 512..363 | 750 | 100 | Minus |
chr2RHet | 3288813 | chr2RHet | 826455..826577 | 512..634 | 510 | 94.3 | Plus |
chr3R | 27901430 | chr3R | 25999915..26000012 | 152..55 | 475 | 99 | Minus |
chr3R | 27901430 | chr3R | 26000083..26000134 | 52..1 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 30176229..30176586 | 1111..754 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 30176643..30176885 | 754..512 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 30177177..30177389 | 364..152 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 30176944..30177093 | 512..363 | 750 | 100 | Minus |
2R | 25286936 | 2R | 2083319..2083441 | 512..634 | 510 | 94.3 | Plus |
3R | 32079331 | 3R | 30177453..30177550 | 152..55 | 490 | 100 | Minus |
3R | 32079331 | 3R | 30177615..30177672 | 58..1 | 275 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29917060..29917417 | 1111..754 | 1790 | 100 | Minus |
3R | 31820162 | 3R | 29917474..29917716 | 754..512 | 1215 | 100 | Minus |
3R | 31820162 | 3R | 29918008..29918220 | 364..152 | 1065 | 100 | Minus |
3R | 31820162 | 3R | 29917775..29917924 | 512..363 | 750 | 100 | Minus |
2R | 25260384 | 2R | 2083319..2083441 | 512..634 | 510 | 94.3 | Plus |
3R | 31820162 | 3R | 29918284..29918381 | 152..55 | 490 | 100 | Minus |
3R | 31820162 | 3R | 29918446..29918503 | 58..1 | 275 | 98.2 | Minus |
2R | 25260384 | 2R | 2083234..2083261 | 485..512 | 140 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25998688..25999047 | 755..1114 | 97 | <- | Minus |
chr3R | 25999105..25999346 | 513..754 | 97 | <- | Minus |
chr3R | 25999406..25999553 | 365..512 | 100 | <- | Minus |
chr3R | 25999639..25999851 | 152..364 | 98 | <- | Minus |
chr3R | 25999916..26000012 | 55..151 | 98 | <- | Minus |
chr3R | 26000081..26000134 | 1..54 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..765 | 59..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..765 | 59..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..765 | 59..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..765 | 59..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..765 | 59..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..1113 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..1113 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RB | 29..1141 | 1..1114 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RA | 1..1113 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1983-RB | 29..1141 | 1..1114 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30176226..30176585 | 755..1114 | 99 | <- | Minus |
3R | 30176643..30176884 | 513..754 | 100 | <- | Minus |
3R | 30176944..30177091 | 365..512 | 100 | <- | Minus |
3R | 30177177..30177389 | 152..364 | 100 | <- | Minus |
3R | 30177454..30177550 | 55..151 | 100 | <- | Minus |
3R | 30177619..30177672 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30176226..30176585 | 755..1114 | 99 | <- | Minus |
3R | 30176643..30176884 | 513..754 | 100 | <- | Minus |
3R | 30176944..30177091 | 365..512 | 100 | <- | Minus |
3R | 30177177..30177389 | 152..364 | 100 | <- | Minus |
3R | 30177454..30177550 | 55..151 | 100 | <- | Minus |
3R | 30177619..30177672 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30176226..30176585 | 755..1114 | 99 | <- | Minus |
3R | 30176643..30176884 | 513..754 | 100 | <- | Minus |
3R | 30176944..30177091 | 365..512 | 100 | <- | Minus |
3R | 30177177..30177389 | 152..364 | 100 | <- | Minus |
3R | 30177454..30177550 | 55..151 | 100 | <- | Minus |
3R | 30177619..30177672 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 26001948..26002307 | 755..1114 | 99 | <- | Minus |
arm_3R | 26002365..26002606 | 513..754 | 100 | <- | Minus |
arm_3R | 26002666..26002813 | 365..512 | 100 | <- | Minus |
arm_3R | 26002899..26003111 | 152..364 | 100 | <- | Minus |
arm_3R | 26003176..26003272 | 55..151 | 100 | <- | Minus |
arm_3R | 26003341..26003394 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29917057..29917416 | 755..1114 | 99 | <- | Minus |
3R | 29917474..29917715 | 513..754 | 100 | <- | Minus |
3R | 29917775..29917922 | 365..512 | 100 | <- | Minus |
3R | 29918008..29918220 | 152..364 | 100 | <- | Minus |
3R | 29918285..29918381 | 55..151 | 100 | <- | Minus |
3R | 29918450..29918503 | 1..54 | 100 | Minus |
Translation from 58 to 822
> RE46560.hyp MLRRTMAEFDVKAGLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAE AVIEAYEGGQRDFGENYVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKI NKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQINTSGE DVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNGPNPDFVS LMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHR AAKV*
Translation from 58 to 822
> RE46560.pep MLRRTMAEFDVKAGLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAE AVIEAYEGGQRDFGENYVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKI NKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQINTSGE DVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNGPNPDFVS LMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHR AAKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16195-PA | 249 | GF16195-PA | 1..248 | 6..253 | 1152 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11955-PA | 254 | GG11955-PA | 1..253 | 1..253 | 1314 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18384-PA | 249 | GH18384-PA | 1..248 | 6..253 | 1038 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1983-PB | 254 | CG1983-PB | 1..254 | 1..254 | 1301 | 100 | Plus |
CG1983-PA | 254 | CG1983-PA | 1..254 | 1..254 | 1301 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23376-PA | 255 | GI23376-PA | 1..250 | 1..250 | 1065 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14062-PA | 254 | GL14062-PA | 1..253 | 1..253 | 1177 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26943-PA | 254 | GA26943-PA | 1..253 | 1..253 | 1177 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12173-PA | 254 | GM12173-PA | 1..253 | 1..253 | 1328 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17245-PA | 270 | GD17245-PA | 1..253 | 1..253 | 1319 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10370-PA | 254 | GJ10370-PA | 1..253 | 1..253 | 1087 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13144-PA | 249 | GK13144-PA | 1..248 | 6..253 | 1117 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23404-PA | 254 | GE23404-PA | 1..253 | 1..253 | 1317 | 96 | Plus |