Clone RE46702 Report

Search the DGRC for RE46702

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:467
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG10660-RA
Protein status:RE46702.pep: gold
Preliminary Size:1578
Sequenced Size:1722

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10660 2002-01-01 Sim4 clustering to Release 2
CG10660 2003-01-01 Sim4 clustering to Release 3
CG10660 2008-04-29 Release 5.5 accounting
CG10660 2008-08-15 Release 5.9 accounting
CG10660 2008-12-18 5.12 accounting

Clone Sequence Records

RE46702.complete Sequence

1722 bp (1722 high quality bases) assembled on 2005-08-03

GenBank Submission: BT023761

> RE46702.complete
AATTTATCGCTTCTTCGCCTTTGCGCAATCGAATGGAAAAGCGGATTGCA
TTCCATTCCCATACCCGGTTGAAGTAGCAGCCGGATCACCCGGACATCAT
GAACAAACTACGGGCCCTGCTGCCCGGCCAACATTCTGGCTCCAATGGAG
CATCCCGGCACTCCGTAACTCTGGAGCCGGAGATCGGATTCCAGATCACC
ATTGACAATCCAAAAAACAACGATCAGAGCAAGGGTTCCACGGCGGTGCC
CGAACTGAATGTCCATCTCATCGCCGCGCGACATTTGCCCTCTCTTTTCG
GCTTCAAGATCGTCCAGGGGTATCTTATAAAGGTGAAGCTTTTTCCCGGT
TCGAAACGCTTGGACAGCAGCATTCAGACGAATACATGGCCAAAGTTCAA
TGAAAATTTCAAGTTTCCCCTGGTGCCGGATATCAAATCCTCTATGAAAC
ATGTGGCTCGACGTCCCGCAAATGGACAGGTAAGCAGCTCGGATCAGGAG
CCGGAACAACTCTTTTCCGGGCAATTTTTGGTCTTTACGGTCTACGCGCT
ACTGGAACTTCCGGCAACGAACTTCAATCGCTTTAACAAGACATACCGCT
CGCTAAAAGATAGAAGCACCAGCTTTGTGCAGCGTTTCGTGGATCCAACT
GCGAGTGCTCCAAGTGAGGCAAAGACTGAGGCCGGCGGAAAGCCAAGTGA
CCAGGGAAAGGGCAGGAAGAAGTCGTCGGAGAGCTCCGCTCGGGATGCGA
TGCCACCGCTGACCATCAGTGAATCGCGCAGAAATATAGGTTCCGTCACC
TGTTACCTGGAATCGAAGCTCTTCCAGCGCAACAGCCGCACGGGGTGCTA
TTCCACGGAAGAGCTGTGGCTGCCTATCAAAGATATCACCACGACGGTGG
CCAAGTCGTCACCCAGCAACAACAATTTGGTTAACTCCACCAAGGGTGTG
GTCGAACTGGCTCTCGAGGTGCGAGATCTCCTGGAATGTGAGACACCTGT
GGATATTTCACTGCCCCCTGCCACGCCCACGAACACGCCCACTACACCAG
ATCCTCCATCTCCACTTGCCACCCATGCGACCAACAATTGGCAACGGATG
ACCGCCGAAGTGAAGCGGAAAATGGGCATTAGCAATGCCGGCAACAGCGA
CTCCGGCAGATACCTGCTCCGGGTGACCACCACACGGATGCGTTGCTCCA
ATAAGGTCAAGGATGAGCTGGAGGCCACGGCGAGCTCCGGTGTGTATGTG
AAGACCACGGCCTTCGAGCACGGCATCTACATAGACGCCTGGAAGTCCCC
CATTTTCTTTCCCTCGCTGTCCACCAAGTGGGACGATGGATCCGGTGAGG
GTACGATAGATATACCGCTCCAGAGACTCGATCAGTTGGAGGACATCGTG
CTGCGCATCACATTGGCCACCAAGAAGATGGGCAAGAAACTGGTGCTCGG
CACCGTCATAGTCGGCGGAGATCAGGCGGGGGATACGGGCTCCGAGCAGA
TGCGACTCATCCGGGAATCCCCGCCAGGTCAGCGGGTGGCCGCCTGGCAC
TGTTACCACTAAGCCGTACTCAAATCAACACGCCAAACTGAATGTACATA
GCAAAAATCCTAAGTTTAATGATATAGAAATTCCCTTGTGCATATATATG
TATTTCTGCTGTATGCATTTACTTTGCGATCGTTAAAAATATTAAATTTA
ATTGCGAAAAAAAAAAAAAAAA

RE46702.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10660-RA 1793 CG10660-RA 66..1773 1..1708 8540 100 Plus
CG10660.c 2499 CG10660.c 772..2479 1..1708 8540 100 Plus
CG10660.b 2478 CG10660.b 1340..2458 590..1708 5595 100 Plus
CG10660.b 2478 CG10660.b 772..1341 1..570 2850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12477294..12478073 1706..927 3870 99.7 Minus
chr3L 24539361 chr3L 12480373..12480706 334..1 1580 98.2 Minus
chr3L 24539361 chr3L 12479186..12479408 791..569 1070 98.7 Minus
chr3L 24539361 chr3L 12478709..12478847 926..788 695 100 Minus
chr3L 24539361 chr3L 12479461..12479593 569..437 605 97 Minus
chr3L 24539361 chr3L 12479644..12479749 436..331 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12486666..12487447 1708..927 3910 100 Minus
3L 28110227 3L 12489739..12490072 334..1 1670 100 Minus
3L 28110227 3L 12488553..12488775 791..569 1115 100 Minus
3L 28110227 3L 12488083..12488221 926..788 695 100 Minus
3L 28110227 3L 12488828..12488960 569..437 665 100 Minus
3L 28110227 3L 12489012..12489117 436..331 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12479766..12480547 1708..927 3910 100 Minus
3L 28103327 3L 12482839..12483172 334..1 1670 100 Minus
3L 28103327 3L 12481653..12481875 791..569 1115 100 Minus
3L 28103327 3L 12481183..12481321 926..788 695 100 Minus
3L 28103327 3L 12481928..12482060 569..437 665 100 Minus
3L 28103327 3L 12482112..12482217 436..331 530 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:20:32 has no hits.

RE46702.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:21:34 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12477319..12478073 927..1681 99 <- Minus
chr3L 12478709..12478845 790..926 100 <- Minus
chr3L 12479188..12479407 570..789 98 <- Minus
chr3L 12479461..12479593 437..569 96 <- Minus
chr3L 12479644..12479747 333..436 100 <- Minus
chr3L 12480375..12480706 1..332 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:18:54 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 1..1464 99..1562 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:50 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 1..1464 99..1562 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:11:28 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 1..1464 99..1562 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:32 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 1..1464 99..1562 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:16 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 1..1464 99..1562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:32:44 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 17..1722 1..1706 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:49 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 17..1722 1..1706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:28 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 4..1709 1..1706 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:33 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 17..1722 1..1706 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:16 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
CG10660-RA 4..1709 1..1706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:34 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12489012..12489115 333..436 100 <- Minus
3L 12488555..12488774 570..789 100 <- Minus
3L 12486668..12487447 927..1706 100 <- Minus
3L 12488083..12488219 790..926 100 <- Minus
3L 12488828..12488960 437..569 100 <- Minus
3L 12489741..12490072 1..332 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:34 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12489012..12489115 333..436 100 <- Minus
3L 12488555..12488774 570..789 100 <- Minus
3L 12486668..12487447 927..1706 100 <- Minus
3L 12488083..12488219 790..926 100 <- Minus
3L 12488828..12488960 437..569 100 <- Minus
3L 12489741..12490072 1..332 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:34 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12489012..12489115 333..436 100 <- Minus
3L 12488555..12488774 570..789 100 <- Minus
3L 12486668..12487447 927..1706 100 <- Minus
3L 12488083..12488219 790..926 100 <- Minus
3L 12488828..12488960 437..569 100 <- Minus
3L 12489741..12490072 1..332 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:28 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12481183..12481319 790..926 100 <- Minus
arm_3L 12481655..12481874 570..789 100 <- Minus
arm_3L 12481928..12482060 437..569 100 <- Minus
arm_3L 12482112..12482215 333..436 100 <- Minus
arm_3L 12479768..12480547 927..1706 100 <- Minus
arm_3L 12482841..12483172 1..332 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:06 Download gff for RE46702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12479768..12480547 927..1706 100 <- Minus
3L 12481183..12481319 790..926 100 <- Minus
3L 12481655..12481874 570..789 100 <- Minus
3L 12481928..12482060 437..569 100 <- Minus
3L 12482112..12482215 333..436 100 <- Minus
3L 12482841..12483172 1..332 100   Minus

RE46702.hyp Sequence

Translation from 98 to 1561

> RE46702.hyp
MNKLRALLPGQHSGSNGASRHSVTLEPEIGFQITIDNPKNNDQSKGSTAV
PELNVHLIAARHLPSLFGFKIVQGYLIKVKLFPGSKRLDSSIQTNTWPKF
NENFKFPLVPDIKSSMKHVARRPANGQVSSSDQEPEQLFSGQFLVFTVYA
LLELPATNFNRFNKTYRSLKDRSTSFVQRFVDPTASAPSEAKTEAGGKPS
DQGKGRKKSSESSARDAMPPLTISESRRNIGSVTCYLESKLFQRNSRTGC
YSTEELWLPIKDITTTVAKSSPSNNNLVNSTKGVVELALEVRDLLECETP
VDISLPPATPTNTPTTPDPPSPLATHATNNWQRMTAEVKRKMGISNAGNS
DSGRYLLRVTTTRMRCSNKVKDELEATASSGVYVKTTAFEHGIYIDAWKS
PIFFPSLSTKWDDGSGEGTIDIPLQRLDQLEDIVLRITLATKKMGKKLVL
GTVIVGGDQAGDTGSEQMRLIRESPPGQRVAAWHCYH*

RE46702.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10660-PC 487 CG10660-PC 1..487 1..487 2526 100 Plus
CG10660-PA 487 CG10660-PA 1..487 1..487 2526 100 Plus
CG10660-PD 480 CG10660-PD 1..480 1..487 2468 98.6 Plus
CG10660-PB 480 CG10660-PB 1..480 1..487 2468 98.6 Plus

RE46702.pep Sequence

Translation from 98 to 1561

> RE46702.pep
MNKLRALLPGQHSGSNGASRHSVTLEPEIGFQITIDNPKNNDQSKGSTAV
PELNVHLIAARHLPSLFGFKIVQGYLIKVKLFPGSKRLDSSIQTNTWPKF
NENFKFPLVPDIKSSMKHVARRPANGQVSSSDQEPEQLFSGQFLVFTVYA
LLELPATNFNRFNKTYRSLKDRSTSFVQRFVDPTASAPSEAKTEAGGKPS
DQGKGRKKSSESSARDAMPPLTISESRRNIGSVTCYLESKLFQRNSRTGC
YSTEELWLPIKDITTTVAKSSPSNNNLVNSTKGVVELALEVRDLLECETP
VDISLPPATPTNTPTTPDPPSPLATHATNNWQRMTAEVKRKMGISNAGNS
DSGRYLLRVTTTRMRCSNKVKDELEATASSGVYVKTTAFEHGIYIDAWKS
PIFFPSLSTKWDDGSGEGTIDIPLQRLDQLEDIVLRITLATKKMGKKLVL
GTVIVGGDQAGDTGSEQMRLIRESPPGQRVAAWHCYH*

RE46702.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24016-PA 492 GF24016-PA 1..492 1..487 2105 82.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13827-PA 484 GG13827-PA 1..484 1..487 2258 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16062-PA 480 GH16062-PA 1..480 1..487 1599 65.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10660-PC 487 CG10660-PC 1..487 1..487 2526 100 Plus
CG10660-PA 487 CG10660-PA 1..487 1..487 2526 100 Plus
CG10660-PD 480 CG10660-PD 1..480 1..487 2468 98.6 Plus
CG10660-PB 480 CG10660-PB 1..480 1..487 2468 98.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12325-PA 490 GI12325-PA 1..490 1..487 1667 67.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24951-PA 492 GL24951-PA 1..492 1..487 1780 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10475-PA 492 GA10475-PA 1..492 1..487 1771 72.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24652-PA 485 GM24652-PA 1..485 1..487 2504 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12716-PA 485 GD12716-PA 1..485 1..487 2508 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13263-PA 485 GJ13263-PA 1..485 1..487 1610 65.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12626-PA 530 GK12626-PA 1..530 1..487 1633 67 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20118-PA 483 GE20118-PA 1..483 1..487 2385 94.9 Plus