BDGP Sequence Production Resources |
Search the DGRC for RE46906
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 469 |
Well: | 6 |
Vector: | pFlc-1 |
Associated Gene/Transcript | cerv-RA |
Protein status: | RE46906.pep: gold |
Preliminary Size: | 534 |
Sequenced Size: | 970 |
Gene | Date | Evidence |
---|---|---|
CG15645 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15645 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15645 | 2003-05-20 | Blastp of sequenced clone |
CG15645 | 2008-04-29 | Release 5.5 accounting |
CG15645 | 2008-08-15 | Release 5.9 accounting |
cerv | 2008-12-18 | 5.12 accounting |
970 bp (970 high quality bases) assembled on 2003-05-20
GenBank Submission: BT011022
> RE46906.complete AGCTGAACCTAGCTAAGCGTCAGTCTTGAACATTTGGATCCAAATATTCT GGATTTGCAATTTGCAAAGCGTCTGCATAGAATCTGGGCTTTAAAATGGA CTTCAATTACCATGTGGATTCGGCACTTACCACTTTATTGGAAAACCAAA AGTTCTTCAAAGAAATGGCAGAAGTCGTGTCCGATTTCAGTGATGGCAGG GAGATCCAGAAGTTGTTGGACCAGAACGTGGATCTCGCCGAGAATCTCAT CCGAATGAAGAGCAAGCACCAATTGCTCAGCAAGGCTATGAAGCATGCCA AAAACTCTAGCAACACCATCGAGAAGTTCGAGGAAGTCTGGAAGGAGCGC TCCGAAGCGGTGGAGCAGAAGCGCATCGATGTCAAGAACTCAGCCGAGTT CAAAAACTTCATGAAAGCGGCAGCTCCCCAGGCGGGTGCGGAAACAAATG GTCAAGCGAATAGCGCCGCCCATGACGAGGACCTTATCATGGAAGCCACC GGCGGCGAGGTCTTCTCGCTCTACGATCCCTGGTCCAAAGCCTTGATAAA GAACCCCGTGCGCAACAAAAAGTGCGGCCACATCTACGACCGCGACTCGG TGATGCTGATCATCACGGACAACATTGGTATTCGATGCCCAGTGCTCGGC TGTCCCAACAGGTCCTACATCCATCCAGCGCACCTGGTCAAGGACTCCAA CCTACAGCAGAAGTTGCAAGAGCGCATGTCTGACGCGATCGAGAAAGAAA CTTCCTCGGAGGAGGACGATGAACAGGCAGATCATTAATTATGCGCAACT TCCTTCTTGTCGACTAATAACGCAGCGTAAGATATCACGTTCTTGTAAGA CAACCATTTGATGAAAATTTAAGGTACAACGAATAAACATGTTTTAAAAA TAGTCCCGAAAAAATTTAGAGAAAATATATTAGAAGTGCAGTATGCACGT ATATGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cerv-RA | 1076 | cerv-RA | 122..1073 | 1..952 | 4760 | 100 | Plus |
cerv-RB | 822 | cerv-RB | 40..819 | 173..952 | 3900 | 100 | Plus |
qjt-RA | 931 | qjt-RA | 573..917 | 429..773 | 960 | 85.2 | Plus |
qjt-RA | 931 | qjt-RA | 357..553 | 222..418 | 535 | 84.7 | Plus |
qjt-RA | 931 | qjt-RA | 215..352 | 92..229 | 390 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15466875..15467654 | 952..173 | 3900 | 100 | Minus |
chr3L | 24539361 | chr3L | 17468876..17469578 | 92..773 | 1600 | 82.5 | Plus |
chrX | 22417052 | chrX | 15464953..15465429 | 792..298 | 970 | 80.2 | Minus |
chrX | 22417052 | chrX | 15467698..15467871 | 174..1 | 870 | 100 | Minus |
chrX | 22417052 | chrX | 15445295..15445629 | 792..458 | 820 | 83 | Minus |
chrX | 22417052 | chrX | 15445674..15445768 | 392..298 | 385 | 93.7 | Minus |
chrX | 22417052 | chrX | 14205142..14205241 | 855..954 | 350 | 90 | Plus |
chrX | 22417052 | chrX | 14206599..14206730 | 818..954 | 330 | 86.1 | Plus |
chrX | 22417052 | chrX | 14270400..14270531 | 954..818 | 330 | 86.1 | Minus |
chrX | 22417052 | chrX | 15465584..15465651 | 83..15 | 220 | 91.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15576988..15577767 | 952..173 | 3900 | 100 | Minus |
3L | 28110227 | 3L | 17479358..17480060 | 92..773 | 1570 | 82.2 | Plus |
X | 23542271 | X | 15575035..15575511 | 792..298 | 970 | 80.2 | Minus |
X | 23542271 | X | 15577811..15577984 | 174..1 | 870 | 100 | Minus |
X | 23542271 | X | 15555341..15555675 | 792..458 | 820 | 83 | Minus |
X | 23542271 | X | 15555720..15555814 | 392..298 | 385 | 93.7 | Minus |
X | 23542271 | X | 14314549..14314648 | 855..954 | 350 | 90 | Plus |
X | 23542271 | X | 14316006..14316137 | 818..954 | 330 | 86.1 | Plus |
X | 23542271 | X | 14379819..14379950 | 954..818 | 330 | 86.1 | Minus |
X | 23542271 | X | 15575666..15575733 | 83..15 | 220 | 91.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15585086..15585865 | 952..173 | 3900 | 100 | Minus |
3L | 28103327 | 3L | 17472816..17473160 | 429..773 | 960 | 85.2 | Plus |
X | 23527363 | X | 15585909..15586082 | 174..1 | 870 | 100 | Minus |
X | 23527363 | X | 15563439..15563773 | 792..458 | 820 | 82.9 | Minus |
X | 23527363 | X | 15583133..15583467 | 792..458 | 805 | 82.6 | Minus |
3L | 28103327 | 3L | 17472600..17472796 | 222..418 | 535 | 84.7 | Plus |
X | 23527363 | X | 15583487..15583609 | 420..298 | 390 | 87.8 | Minus |
3L | 28103327 | 3L | 17472458..17472595 | 92..229 | 390 | 85.5 | Plus |
X | 23527363 | X | 15563818..15563912 | 392..298 | 385 | 93.6 | Minus |
X | 23527363 | X | 14322647..14322746 | 855..954 | 350 | 90 | Plus |
X | 23527363 | X | 14324104..14324235 | 818..954 | 350 | 86.1 | Plus |
X | 23527363 | X | 14387917..14388048 | 954..818 | 350 | 86.1 | Minus |
X | 23527363 | X | 15583764..15583831 | 83..15 | 230 | 91.3 | Minus |
X | 23527363 | X | 15564076..15564143 | 83..15 | 185 | 86.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 2619..2649 | 281..312 | 112 | 87.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15466872..15467652 | 175..955 | 99 | <- | Minus |
chrX | 15467698..15467871 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 1..693 | 96..788 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 1..693 | 96..788 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 1..693 | 96..788 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15645-RA | 1..693 | 96..788 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 1..693 | 96..788 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 1..953 | 1..955 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 1..953 | 1..955 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 15..968 | 1..954 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15645-RA | 1..953 | 1..955 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cerv-RA | 15..968 | 1..954 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15576985..15577765 | 175..955 | 99 | <- | Minus |
X | 15577811..15577984 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15576985..15577765 | 175..955 | 99 | <- | Minus |
X | 15577811..15577984 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15576985..15577765 | 175..955 | 99 | <- | Minus |
X | 15577811..15577984 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15471018..15471798 | 175..955 | 99 | <- | Minus |
arm_X | 15471844..15472017 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15585083..15585863 | 175..955 | 99 | <- | Minus |
X | 15585909..15586082 | 1..174 | 100 | Minus |
Translation from 95 to 787
> RE46906.pep MDFNYHVDSALTTLLENQKFFKEMAEVVSDFSDGREIQKLLDQNVDLAEN LIRMKSKHQLLSKAMKHAKNSSNTIEKFEEVWKERSEAVEQKRIDVKNSA EFKNFMKAAAPQAGAETNGQANSAAHDEDLIMEATGGEVFSLYDPWSKAL IKNPVRNKKCGHIYDRDSVMLIITDNIGIRCPVLGCPNRSYIHPAHLVKD SNLQQKLQERMSDAIEKETSSEEDDEQADH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22252-PA | 248 | GF22252-PA | 1..224 | 1..212 | 425 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\cerv-PA | 241 | GG19392-PA | 1..231 | 1..221 | 819 | 66.2 | Plus |
Dere\GG11876-PA | 240 | GG11876-PA | 1..230 | 1..221 | 778 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22621-PA | 226 | GH22621-PA | 1..226 | 1..224 | 417 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cerv-PD | 230 | CG15645-PD | 1..230 | 1..230 | 1187 | 100 | Plus |
cerv-PA | 230 | CG15645-PA | 1..230 | 1..230 | 1187 | 100 | Plus |
cerv-PC | 177 | CG15645-PC | 1..177 | 54..230 | 921 | 100 | Plus |
qjt-PB | 233 | CG13732-PB | 1..233 | 1..226 | 805 | 69.1 | Plus |
qjt-PA | 233 | CG13732-PA | 1..233 | 1..226 | 805 | 69.1 | Plus |
CG42299-PA | 182 | CG32584-PA | 9..182 | 17..224 | 496 | 54.8 | Plus |
CG42300-PA | 181 | CG42300-PA | 9..181 | 17..224 | 485 | 54.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15639-PA | 226 | GI15639-PA | 1..208 | 1..208 | 344 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25912-PA | 232 | GL25912-PA | 1..217 | 1..213 | 437 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25188-PA | 232 | GA25188-PA | 1..217 | 1..213 | 427 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22549-PA | 232 | GM22549-PA | 1..232 | 1..230 | 980 | 82.4 | Plus |
Dsec\qjt-PA | 233 | GM25704-PA | 1..233 | 1..226 | 822 | 67.8 | Plus |
Dsec\GM22550-PA | 200 | GM22550-PA | 13..200 | 45..230 | 788 | 82.5 | Plus |
Dsec\GM22546-PA | 98 | GM22546-PA | 1..98 | 132..230 | 417 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\cerv-PA | 232 | GD15792-PA | 1..232 | 1..230 | 1044 | 85 | Plus |
Dsim\qjt-PA | 233 | GD14711-PA | 1..233 | 1..226 | 832 | 68.2 | Plus |
Dsim\GD15796-PA | 196 | GD15796-PA | 1..108 | 1..108 | 432 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19226-PA | 225 | GJ19226-PA | 1..208 | 1..208 | 341 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19230-PA | 226 | GK19230-PA | 1..214 | 1..212 | 407 | 38.1 | Plus |
Translation from 95 to 787
> RE46906.hyp MDFNYHVDSALTTLLENQKFFKEMAEVVSDFSDGREIQKLLDQNVDLAEN LIRMKSKHQLLSKAMKHAKNSSNTIEKFEEVWKERSEAVEQKRIDVKNSA EFKNFMKAAAPQAGAETNGQANSAAHDEDLIMEATGGEVFSLYDPWSKAL IKNPVRNKKCGHIYDRDSVMLIITDNIGIRCPVLGCPNRSYIHPAHLVKD SNLQQKLQERMSDAIEKETSSEEDDEQADH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cerv-PD | 230 | CG15645-PD | 1..230 | 1..230 | 1187 | 100 | Plus |
cerv-PA | 230 | CG15645-PA | 1..230 | 1..230 | 1187 | 100 | Plus |
cerv-PC | 177 | CG15645-PC | 1..177 | 54..230 | 921 | 100 | Plus |
qjt-PB | 233 | CG13732-PB | 1..233 | 1..226 | 805 | 69.1 | Plus |
qjt-PA | 233 | CG13732-PA | 1..233 | 1..226 | 805 | 69.1 | Plus |