BDGP Sequence Production Resources |
Search the DGRC for RE47146
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 471 |
Well: | 46 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ced-6-RD |
Protein status: | RE47146.pep: gold |
Sequenced Size: | 2480 |
Gene | Date | Evidence |
---|---|---|
RNA-seq10001 | 2010-05-11 | Manual selection by Jane Landolin |
2480 bp assembled on 2010-09-13
GenBank Submission: BT125651.1
> RE47146.complete TGGGAGTTTGAAATCGACGACAACATCAGCAGCAACAAGCATTGCAACAA CAGCGACGGCGCGGTGATAAGTCGGCTGCTGGCTGTATATTGCCGCTGGC TTGTTATTTTATTGTCGCTTTTGTTGCACATTGAAAATAATACACAAAAT AATTGAATTACTCGAAATGTGTGCATGTCCGTGTGCGTGCCACTTGTGTA TGTATGTGTGTGTGTCGTGCCTTTATGGGGGCGTTCAGGGCCCCGCTGAT AAGCGATGATCAAGAGCTCCCTTAAACGCTTAAAAACGGCGCCGACCACA ACAATGCCTTATCAGCCAGCCAACAGCGGCGGGACGTCTGGTGGCAGCAA GGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAACAAGCAGAACAGCA GCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGCCGACGGGGGCAAC AACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACGGGGATGCCAAAAG CGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACGCCGGAGCAGCTCA TCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGGTAACCTGAGCGTG GATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCATTCGGAAGCTGCA GTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACCCAGGAGAAGTTCA AGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGCAATCCAGGAGCCG CGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACAACATTTCGTATTG TGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTCATTGCCAAGACGG TGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGGCCATGCAAACGGA AATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACGAGTGCTTTGTCTT CATTTCAAACAAATTGGCCTCGGATATCACGCTGACCATTGGCCAGGCCT TCGATTTGGCCTACAGAAAGTACATGGATAGCACCGAAAAGACGAATCTG AGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAACCGTAAACGTTTA CAAGGAGCGACTGCGAGAAGTTTCCGCCAAATTGCCAAAGGCCGAGCTAG ATGCCCTGCTCTTCAATCTGGGAATCAAGGATATCCTGGAAGCGCCCACC ACAGAACCCCAGAATGGAATCGAGGTGGCCAGCGAAGCCCTGAGCAACGG CAAGCTGGATGATGATAAGCTGCTAATCGACACCAATTCCACCACAGCGT CGACCCACTCAGCGTCGCCCAGCTCGTTCTTGCCGATTGTCCCGCCGAGG AACAATTTATCCAGCCAGATCAGCATCGGCGGCAAGAGCAATAGCCAAAA GATGGACGAGCTGCTGCTGAACTCGGATTCCGATAGTGATTTCGATCCGC GAGCGGATGAGACGCAGGAGATCGGCGGCACTGGTCGCAGTGCGATAAGC AATATGTTCGGCTTCGAGCCGGCCAATAGCTTTGGTCAGCATTTGTTTTC CAACAACAATGATCACAAGCTGCAAAATAATAACAGCAGCTTACTGATAA CGAGCAATAACAACAGCATTAACAGCAGTGGCTTCTCCAGCGAGCTGAAC ATAACGCCGCCATTGTTGGCCCCACCGCCAAAGATTGCCGCTCCCAGGCG CCTAAACTCGGTGACAACGGGCAACGGCCTGAATGGCAACACAGATCTAT TCGGTTCGGATCCTTTCGAATTGAACAATGGACCGAACATTTTCAAGCAA AATCAGCTTAACCTTGACGACTTCTCGCTGGAGAGTTTGGATCCCCTGCG AAAGTAGAGCGGTGCTACCAAGGCCATTTTCACACTTCAACATGATTGAA ACTTTATGACATCCCAAAAGTTTGTCTCATCGTTTATCCTTCTATGTTTC TCCGATTCGCATGCATTCCAATCCAATTGCAATTCGATTTATTTAATGTG TATTATTGTTTATATATTGTATTGTATTTATTATCATTGATTTTTTGTCG ATTTTATATTGCATATTATGAATTCTACTATTATTATAATTATAAATATG ATAATAATCTGAGGTCAAGATCAAAAGAACACAAGAAACAACCGCAATGC ACCTTGTTTAAACGTATCAATTTGTTGCTGTAGTTGAATAGATTAATTGA TGGTCGAGTAAAGCGAATGAAAAAATGTTAACAAGTGATAAATGTGAAAA TTGCTAAACAATGCTAACTGAATGTGAGAATTTTGTATAAAATAATTATA AAGACATAACCAGAAGCAAATGAATCGATTACTGTATAGAGCCGAAATAC GAGGAGAATTAAAGCAAAATGAACAATATTTAATGTTATTGATGCAATAT AGAGAAATATTATTATTACTATTATTATTGTGTACGTAAAGAATAAAATG TAGTGCCTAAAAGAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5322184..5322852 | 2463..1795 | 3345 | 100 | Minus |
chr2R | 21145070 | chr2R | 5323877..5324315 | 1016..578 | 2195 | 100 | Minus |
chr2R | 21145070 | chr2R | 5323101..5323509 | 1666..1258 | 2045 | 100 | Minus |
chr2R | 21145070 | chr2R | 5324935..5325249 | 579..265 | 1575 | 100 | Minus |
chr2R | 21145070 | chr2R | 5332188..5332449 | 266..5 | 1310 | 100 | Minus |
chr2R | 21145070 | chr2R | 5323566..5323811 | 1258..1013 | 1230 | 100 | Minus |
chr2R | 21145070 | chr2R | 5322909..5323039 | 1797..1667 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9434665..9435337 | 2467..1795 | 3365 | 100 | Minus |
2R | 25286936 | 2R | 9436362..9436800 | 1016..578 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 9435586..9435994 | 1666..1258 | 2045 | 100 | Minus |
2R | 25286936 | 2R | 9437420..9437734 | 579..265 | 1575 | 100 | Minus |
2R | 25286936 | 2R | 9444673..9444934 | 266..5 | 1310 | 100 | Minus |
2R | 25286936 | 2R | 9436051..9436296 | 1258..1013 | 1230 | 100 | Minus |
2R | 25286936 | 2R | 9435394..9435524 | 1797..1667 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9435864..9436536 | 2467..1795 | 3365 | 100 | Minus |
2R | 25260384 | 2R | 9437561..9437999 | 1016..578 | 2195 | 100 | Minus |
2R | 25260384 | 2R | 9436785..9437193 | 1666..1258 | 2045 | 100 | Minus |
2R | 25260384 | 2R | 9438619..9438933 | 579..265 | 1575 | 100 | Minus |
2R | 25260384 | 2R | 9445872..9446133 | 266..5 | 1310 | 100 | Minus |
2R | 25260384 | 2R | 9437250..9437495 | 1258..1013 | 1230 | 100 | Minus |
2R | 25260384 | 2R | 9436593..9436723 | 1797..1667 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6893 | 385..486 | 184 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6905 | 381..561 | 174 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2427 | 403..525 | 158 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1598 | 377..501 | 145 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2432 | 394..524 | 136 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6818 | 447..555 | 123 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2418 | 21..60 | 119 | 77.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1024..1148 | 403..525 | 116 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2484 | 13..60 | 115 | 77.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5322184..5322849 | 1798..2463 | 95 | <- | Minus |
chr2R | 5322909..5323039 | 1667..1797 | 100 | <- | Minus |
chr2R | 5323101..5323508 | 1259..1666 | 100 | <- | Minus |
chr2R | 5323566..5323807 | 1017..1258 | 100 | <- | Minus |
chr2R | 5323877..5324313 | 580..1016 | 100 | <- | Minus |
chr2R | 5324935..5325025 | 489..579 | 100 | == | Minus |
chr2R | 5325126..5325247 | 267..388 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 1..1554 | 304..1857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 1..1554 | 304..1857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RD | 1..1602 | 256..1857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RD | 1..1602 | 256..1857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RC | 53..2251 | 265..2463 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RC | 53..2251 | 265..2463 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RD | 2..2462 | 4..2463 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RD | 2..2462 | 4..2463 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9434669..9435334 | 1798..2463 | 100 | <- | Minus |
2R | 9435394..9435524 | 1667..1797 | 100 | <- | Minus |
2R | 9435586..9435993 | 1259..1666 | 100 | <- | Minus |
2R | 9436051..9436292 | 1017..1258 | 100 | <- | Minus |
2R | 9436362..9436798 | 580..1016 | 100 | <- | Minus |
2R | 9437420..9437732 | 267..579 | 100 | <- | Minus |
2R | 9444673..9444936 | 1..266 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9434669..9435334 | 1798..2463 | 100 | <- | Minus |
2R | 9435394..9435524 | 1667..1797 | 100 | <- | Minus |
2R | 9435586..9435993 | 1259..1666 | 100 | <- | Minus |
2R | 9436051..9436292 | 1017..1258 | 100 | <- | Minus |
2R | 9436362..9436798 | 580..1016 | 100 | <- | Minus |
2R | 9437420..9437732 | 267..579 | 100 | <- | Minus |
2R | 9444673..9444936 | 1..266 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9434669..9435334 | 1798..2463 | 100 | <- | Minus |
2R | 9435394..9435524 | 1667..1797 | 100 | <- | Minus |
2R | 9435586..9435993 | 1259..1666 | 100 | <- | Minus |
2R | 9436051..9436292 | 1017..1258 | 100 | <- | Minus |
2R | 9436362..9436798 | 580..1016 | 100 | <- | Minus |
2R | 9437420..9437732 | 267..579 | 100 | <- | Minus |
2R | 9444673..9444936 | 1..266 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5322174..5322839 | 1798..2463 | 100 | <- | Minus |
arm_2R | 5322899..5323029 | 1667..1797 | 100 | <- | Minus |
arm_2R | 5323091..5323498 | 1259..1666 | 100 | <- | Minus |
arm_2R | 5323556..5323797 | 1017..1258 | 100 | <- | Minus |
arm_2R | 5323867..5324303 | 580..1016 | 100 | <- | Minus |
arm_2R | 5324925..5325237 | 267..579 | 100 | <- | Minus |
arm_2R | 5332178..5332441 | 1..266 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9435868..9436533 | 1798..2463 | 100 | <- | Minus |
2R | 9436593..9436723 | 1667..1797 | 100 | <- | Minus |
2R | 9436785..9437192 | 1259..1666 | 100 | <- | Minus |
2R | 9437250..9437491 | 1017..1258 | 100 | <- | Minus |
2R | 9437561..9437997 | 580..1016 | 100 | <- | Minus |
2R | 9438619..9438931 | 267..579 | 100 | <- | Minus |
2R | 9445872..9446135 | 1..266 | 98 | Minus |
Translation from 255 to 1856
> RE47146.hyp MIKSSLKRLKTAPTTTMPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSK QQQQDKDKDAADGGNNTSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLIS GHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKK LEITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVK TQDGSDPTSNGHANGNGDGSAKVEESHECFVFISNKLASDITLTIGQAFD LAYRKYMDSTEKTNLSKAQQQINHLQQTVNVYKERLREVSAKLPKAELDA LLFNLGIKDILEAPTTEPQNGIEVASEALSNGKLDDDKLLIDTNSTTAST HSASPSSFLPIVPPRNNLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRA DETQEIGGTGRSAISNMFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITS NNNSINSSGFSSELNITPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFG SDPFELNNGPNIFKQNQLNLDDFSLESLDPLRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ced-6-PD | 533 | CG11804-PD | 1..533 | 1..533 | 2737 | 100 | Plus |
ced-6-PA | 517 | CG11804-PA | 1..517 | 17..533 | 2661 | 100 | Plus |
ced-6-PC | 517 | CG11804-PC | 1..517 | 17..533 | 2661 | 100 | Plus |
ced-6-PB | 517 | CG11804-PB | 1..517 | 17..533 | 2661 | 100 | Plus |
ced-6-PF | 514 | CG11804-PF | 1..514 | 17..533 | 2631 | 99.4 | Plus |
Translation from 255 to 1856
> RE47146.pep MIKSSLKRLKTAPTTTMPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSK QQQQDKDKDAADGGNNTSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLIS GHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKK LEITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVK TQDGSDPTSNGHANGNGDGSAKVEESHECFVFISNKLASDITLTIGQAFD LAYRKYMDSTEKTNLSKAQQQINHLQQTVNVYKERLREVSAKLPKAELDA LLFNLGIKDILEAPTTEPQNGIEVASEALSNGKLDDDKLLIDTNSTTAST HSASPSSFLPIVPPRNNLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRA DETQEIGGTGRSAISNMFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITS NNNSINSSGFSSELNITPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFG SDPFELNNGPNIFKQNQLNLDDFSLESLDPLRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12503-PA | 520 | GF12503-PA | 1..520 | 17..533 | 1954 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25283-PA | 518 | GG25283-PA | 1..518 | 17..533 | 2644 | 97.1 | Plus |
Dere\GG12437-PA | 1327 | GG12437-PA | 1165..1299 | 91..254 | 159 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21964-PA | 514 | GH21964-PA | 1..514 | 17..533 | 1655 | 69.5 | Plus |
Dgri\GH20822-PA | 1338 | GH20822-PA | 1170..1308 | 91..254 | 165 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ced-6-PD | 533 | CG11804-PD | 1..533 | 1..533 | 2737 | 100 | Plus |
ced-6-PA | 517 | CG11804-PA | 1..517 | 17..533 | 2661 | 100 | Plus |
ced-6-PC | 517 | CG11804-PC | 1..517 | 17..533 | 2661 | 100 | Plus |
ced-6-PB | 517 | CG11804-PB | 1..517 | 17..533 | 2661 | 100 | Plus |
ced-6-PF | 514 | CG11804-PF | 1..514 | 17..533 | 2631 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19669-PA | 534 | GI19669-PA | 1..534 | 17..533 | 1622 | 72.6 | Plus |
Dmoj\GI10712-PA | 1357 | GI10712-PA | 1186..1324 | 91..254 | 161 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17132-PA | 330 | GL17132-PA | 1..329 | 17..340 | 1406 | 83.9 | Plus |
Dper\GL13852-PA | 1345 | GL13852-PA | 1183..1317 | 91..254 | 158 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11210-PA | 537 | GA11210-PA | 1..537 | 17..533 | 2139 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20601-PA | 517 | GM20601-PA | 1..517 | 17..533 | 2707 | 99.2 | Plus |
Dsec\GM23569-PA | 1328 | GM23569-PA | 1166..1300 | 91..254 | 159 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10073-PA | 398 | GD10073-PA | 3..398 | 138..533 | 2044 | 98.2 | Plus |
Dsim\GD15263-PA | 105 | GD15263-PA | 1..93 | 17..109 | 484 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15034-PA | 536 | GJ15034-PA | 1..536 | 17..533 | 1855 | 74.5 | Plus |
Dvir\GJ23127-PA | 270 | GJ23127-PA | 102..240 | 91..254 | 155 | 25.3 | Plus |