Clone RE47146 Report

Search the DGRC for RE47146

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:471
Well:46
Vector:pFlc-1
Associated Gene/Transcriptced-6-RD
Protein status:RE47146.pep: gold
Sequenced Size:2480

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
RNA-seq10001 2010-05-11 Manual selection by Jane Landolin

Clone Sequence Records

RE47146.complete Sequence

2480 bp assembled on 2010-09-13

GenBank Submission: BT125651.1

> RE47146.complete
TGGGAGTTTGAAATCGACGACAACATCAGCAGCAACAAGCATTGCAACAA
CAGCGACGGCGCGGTGATAAGTCGGCTGCTGGCTGTATATTGCCGCTGGC
TTGTTATTTTATTGTCGCTTTTGTTGCACATTGAAAATAATACACAAAAT
AATTGAATTACTCGAAATGTGTGCATGTCCGTGTGCGTGCCACTTGTGTA
TGTATGTGTGTGTGTCGTGCCTTTATGGGGGCGTTCAGGGCCCCGCTGAT
AAGCGATGATCAAGAGCTCCCTTAAACGCTTAAAAACGGCGCCGACCACA
ACAATGCCTTATCAGCCAGCCAACAGCGGCGGGACGTCTGGTGGCAGCAA
GGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAACAAGCAGAACAGCA
GCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGCCGACGGGGGCAAC
AACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACGGGGATGCCAAAAG
CGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACGCCGGAGCAGCTCA
TCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGGTAACCTGAGCGTG
GATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCATTCGGAAGCTGCA
GTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACCCAGGAGAAGTTCA
AGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGCAATCCAGGAGCCG
CGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACAACATTTCGTATTG
TGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTCATTGCCAAGACGG
TGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGGCCATGCAAACGGA
AATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACGAGTGCTTTGTCTT
CATTTCAAACAAATTGGCCTCGGATATCACGCTGACCATTGGCCAGGCCT
TCGATTTGGCCTACAGAAAGTACATGGATAGCACCGAAAAGACGAATCTG
AGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAACCGTAAACGTTTA
CAAGGAGCGACTGCGAGAAGTTTCCGCCAAATTGCCAAAGGCCGAGCTAG
ATGCCCTGCTCTTCAATCTGGGAATCAAGGATATCCTGGAAGCGCCCACC
ACAGAACCCCAGAATGGAATCGAGGTGGCCAGCGAAGCCCTGAGCAACGG
CAAGCTGGATGATGATAAGCTGCTAATCGACACCAATTCCACCACAGCGT
CGACCCACTCAGCGTCGCCCAGCTCGTTCTTGCCGATTGTCCCGCCGAGG
AACAATTTATCCAGCCAGATCAGCATCGGCGGCAAGAGCAATAGCCAAAA
GATGGACGAGCTGCTGCTGAACTCGGATTCCGATAGTGATTTCGATCCGC
GAGCGGATGAGACGCAGGAGATCGGCGGCACTGGTCGCAGTGCGATAAGC
AATATGTTCGGCTTCGAGCCGGCCAATAGCTTTGGTCAGCATTTGTTTTC
CAACAACAATGATCACAAGCTGCAAAATAATAACAGCAGCTTACTGATAA
CGAGCAATAACAACAGCATTAACAGCAGTGGCTTCTCCAGCGAGCTGAAC
ATAACGCCGCCATTGTTGGCCCCACCGCCAAAGATTGCCGCTCCCAGGCG
CCTAAACTCGGTGACAACGGGCAACGGCCTGAATGGCAACACAGATCTAT
TCGGTTCGGATCCTTTCGAATTGAACAATGGACCGAACATTTTCAAGCAA
AATCAGCTTAACCTTGACGACTTCTCGCTGGAGAGTTTGGATCCCCTGCG
AAAGTAGAGCGGTGCTACCAAGGCCATTTTCACACTTCAACATGATTGAA
ACTTTATGACATCCCAAAAGTTTGTCTCATCGTTTATCCTTCTATGTTTC
TCCGATTCGCATGCATTCCAATCCAATTGCAATTCGATTTATTTAATGTG
TATTATTGTTTATATATTGTATTGTATTTATTATCATTGATTTTTTGTCG
ATTTTATATTGCATATTATGAATTCTACTATTATTATAATTATAAATATG
ATAATAATCTGAGGTCAAGATCAAAAGAACACAAGAAACAACCGCAATGC
ACCTTGTTTAAACGTATCAATTTGTTGCTGTAGTTGAATAGATTAATTGA
TGGTCGAGTAAAGCGAATGAAAAAATGTTAACAAGTGATAAATGTGAAAA
TTGCTAAACAATGCTAACTGAATGTGAGAATTTTGTATAAAATAATTATA
AAGACATAACCAGAAGCAAATGAATCGATTACTGTATAGAGCCGAAATAC
GAGGAGAATTAAAGCAAAATGAACAATATTTAATGTTATTGATGCAATAT
AGAGAAATATTATTATTACTATTATTATTGTGTACGTAAAGAATAAAATG
TAGTGCCTAAAAGAAAAAAAAAAAAAAAAA

RE47146.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5322184..5322852 2463..1795 3345 100 Minus
chr2R 21145070 chr2R 5323877..5324315 1016..578 2195 100 Minus
chr2R 21145070 chr2R 5323101..5323509 1666..1258 2045 100 Minus
chr2R 21145070 chr2R 5324935..5325249 579..265 1575 100 Minus
chr2R 21145070 chr2R 5332188..5332449 266..5 1310 100 Minus
chr2R 21145070 chr2R 5323566..5323811 1258..1013 1230 100 Minus
chr2R 21145070 chr2R 5322909..5323039 1797..1667 655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9434665..9435337 2467..1795 3365 100 Minus
2R 25286936 2R 9436362..9436800 1016..578 2195 100 Minus
2R 25286936 2R 9435586..9435994 1666..1258 2045 100 Minus
2R 25286936 2R 9437420..9437734 579..265 1575 100 Minus
2R 25286936 2R 9444673..9444934 266..5 1310 100 Minus
2R 25286936 2R 9436051..9436296 1258..1013 1230 100 Minus
2R 25286936 2R 9435394..9435524 1797..1667 655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9435864..9436536 2467..1795 3365 100 Minus
2R 25260384 2R 9437561..9437999 1016..578 2195 100 Minus
2R 25260384 2R 9436785..9437193 1666..1258 2045 100 Minus
2R 25260384 2R 9438619..9438933 579..265 1575 100 Minus
2R 25260384 2R 9445872..9446133 266..5 1310 100 Minus
2R 25260384 2R 9437250..9437495 1258..1013 1230 100 Minus
2R 25260384 2R 9436593..9436723 1797..1667 655 100 Minus
Blast to na_te.dros performed 2019-03-17 00:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6789..6893 385..486 184 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6905 381..561 174 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2427 403..525 158 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1471..1598 377..501 145 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2432 394..524 136 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6818 447..555 123 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2418 21..60 119 77.5 Plus
roo 9092 roo DM_ROO 9092bp 1024..1148 403..525 116 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2440..2484 13..60 115 77.1 Plus

RE47146.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:48:16 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5322184..5322849 1798..2463 95 <- Minus
chr2R 5322909..5323039 1667..1797 100 <- Minus
chr2R 5323101..5323508 1259..1666 100 <- Minus
chr2R 5323566..5323807 1017..1258 100 <- Minus
chr2R 5323877..5324313 580..1016 100 <- Minus
chr2R 5324935..5325025 489..579 100 == Minus
chr2R 5325126..5325247 267..388 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-09-13 16:15:45 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 1..1554 304..1857 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:41:05 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 1..1554 304..1857 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:15:55 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RD 1..1602 256..1857 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:37:39 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RD 1..1602 256..1857 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-13 16:15:45 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RC 53..2251 265..2463 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:41:05 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RC 53..2251 265..2463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:15:55 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RD 2..2462 4..2463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:37:39 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RD 2..2462 4..2463 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:48:16 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9434669..9435334 1798..2463 100 <- Minus
2R 9435394..9435524 1667..1797 100 <- Minus
2R 9435586..9435993 1259..1666 100 <- Minus
2R 9436051..9436292 1017..1258 100 <- Minus
2R 9436362..9436798 580..1016 100 <- Minus
2R 9437420..9437732 267..579 100 <- Minus
2R 9444673..9444936 1..266 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:48:16 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9434669..9435334 1798..2463 100 <- Minus
2R 9435394..9435524 1667..1797 100 <- Minus
2R 9435586..9435993 1259..1666 100 <- Minus
2R 9436051..9436292 1017..1258 100 <- Minus
2R 9436362..9436798 580..1016 100 <- Minus
2R 9437420..9437732 267..579 100 <- Minus
2R 9444673..9444936 1..266 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:48:16 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9434669..9435334 1798..2463 100 <- Minus
2R 9435394..9435524 1667..1797 100 <- Minus
2R 9435586..9435993 1259..1666 100 <- Minus
2R 9436051..9436292 1017..1258 100 <- Minus
2R 9436362..9436798 580..1016 100 <- Minus
2R 9437420..9437732 267..579 100 <- Minus
2R 9444673..9444936 1..266 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:15:55 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5322174..5322839 1798..2463 100 <- Minus
arm_2R 5322899..5323029 1667..1797 100 <- Minus
arm_2R 5323091..5323498 1259..1666 100 <- Minus
arm_2R 5323556..5323797 1017..1258 100 <- Minus
arm_2R 5323867..5324303 580..1016 100 <- Minus
arm_2R 5324925..5325237 267..579 100 <- Minus
arm_2R 5332178..5332441 1..266 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:44:28 Download gff for RE47146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9435868..9436533 1798..2463 100 <- Minus
2R 9436593..9436723 1667..1797 100 <- Minus
2R 9436785..9437192 1259..1666 100 <- Minus
2R 9437250..9437491 1017..1258 100 <- Minus
2R 9437561..9437997 580..1016 100 <- Minus
2R 9438619..9438931 267..579 100 <- Minus
2R 9445872..9446135 1..266 98   Minus

RE47146.hyp Sequence

Translation from 255 to 1856

> RE47146.hyp
MIKSSLKRLKTAPTTTMPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSK
QQQQDKDKDAADGGNNTSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLIS
GHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKK
LEITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVK
TQDGSDPTSNGHANGNGDGSAKVEESHECFVFISNKLASDITLTIGQAFD
LAYRKYMDSTEKTNLSKAQQQINHLQQTVNVYKERLREVSAKLPKAELDA
LLFNLGIKDILEAPTTEPQNGIEVASEALSNGKLDDDKLLIDTNSTTAST
HSASPSSFLPIVPPRNNLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRA
DETQEIGGTGRSAISNMFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITS
NNNSINSSGFSSELNITPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFG
SDPFELNNGPNIFKQNQLNLDDFSLESLDPLRK*

RE47146.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-PD 533 CG11804-PD 1..533 1..533 2737 100 Plus
ced-6-PA 517 CG11804-PA 1..517 17..533 2661 100 Plus
ced-6-PC 517 CG11804-PC 1..517 17..533 2661 100 Plus
ced-6-PB 517 CG11804-PB 1..517 17..533 2661 100 Plus
ced-6-PF 514 CG11804-PF 1..514 17..533 2631 99.4 Plus

RE47146.pep Sequence

Translation from 255 to 1856

> RE47146.pep
MIKSSLKRLKTAPTTTMPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSK
QQQQDKDKDAADGGNNTSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLIS
GHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKK
LEITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVK
TQDGSDPTSNGHANGNGDGSAKVEESHECFVFISNKLASDITLTIGQAFD
LAYRKYMDSTEKTNLSKAQQQINHLQQTVNVYKERLREVSAKLPKAELDA
LLFNLGIKDILEAPTTEPQNGIEVASEALSNGKLDDDKLLIDTNSTTAST
HSASPSSFLPIVPPRNNLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRA
DETQEIGGTGRSAISNMFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITS
NNNSINSSGFSSELNITPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFG
SDPFELNNGPNIFKQNQLNLDDFSLESLDPLRK*

RE47146.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12503-PA 520 GF12503-PA 1..520 17..533 1954 83.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25283-PA 518 GG25283-PA 1..518 17..533 2644 97.1 Plus
Dere\GG12437-PA 1327 GG12437-PA 1165..1299 91..254 159 27.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21964-PA 514 GH21964-PA 1..514 17..533 1655 69.5 Plus
Dgri\GH20822-PA 1338 GH20822-PA 1170..1308 91..254 165 28.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-PD 533 CG11804-PD 1..533 1..533 2737 100 Plus
ced-6-PA 517 CG11804-PA 1..517 17..533 2661 100 Plus
ced-6-PC 517 CG11804-PC 1..517 17..533 2661 100 Plus
ced-6-PB 517 CG11804-PB 1..517 17..533 2661 100 Plus
ced-6-PF 514 CG11804-PF 1..514 17..533 2631 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19669-PA 534 GI19669-PA 1..534 17..533 1622 72.6 Plus
Dmoj\GI10712-PA 1357 GI10712-PA 1186..1324 91..254 161 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17132-PA 330 GL17132-PA 1..329 17..340 1406 83.9 Plus
Dper\GL13852-PA 1345 GL13852-PA 1183..1317 91..254 158 28.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11210-PA 537 GA11210-PA 1..537 17..533 2139 81 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20601-PA 517 GM20601-PA 1..517 17..533 2707 99.2 Plus
Dsec\GM23569-PA 1328 GM23569-PA 1166..1300 91..254 159 27.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10073-PA 398 GD10073-PA 3..398 138..533 2044 98.2 Plus
Dsim\GD15263-PA 105 GD15263-PA 1..93 17..109 484 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15034-PA 536 GJ15034-PA 1..536 17..533 1855 74.5 Plus
Dvir\GJ23127-PA 270 GJ23127-PA 102..240 91..254 155 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15827-PA 543 GK15827-PA 1..543 17..533 1750 73.2 Plus
Dwil\GK13161-PA 1373 GK13161-PA 1212..1345 91..254 163 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22280-PA 516 GE22280-PA 1..516 17..533 2480 96.1 Plus
Dyak\GE23961-PA 254 GE23961-PA 92..226 91..254 155 27.5 Plus