Clone RE47242 Report

Search the DGRC for RE47242

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:472
Well:42
Vector:pFlc-1
Associated Gene/TranscriptCG17187-RA
Protein status:RE47242.pep: gold
Preliminary Size:828
Sequenced Size:1256

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17187 2002-01-01 Sim4 clustering to Release 2
CG17187 2003-01-01 Sim4 clustering to Release 3
CG17187 2003-01-28 Blastp of sequenced clone
CG17187 2008-04-29 Release 5.5 accounting
CG17187 2008-08-15 Release 5.9 accounting
CG17187 2008-12-18 5.12 accounting

Clone Sequence Records

RE47242.complete Sequence

1256 bp (1256 high quality bases) assembled on 2003-01-28

GenBank Submission: BT003495

> RE47242.complete
TTTGTTTGGACATTTTTGGACCGCCGGCTGCAGTTGTGAAATAAGTCTCG
TATAAAATAGTATATTTTAGCTAACTTTTGCCCAAAAAAGACAAACTGCA
AAACAAACCCATGTTCCAGTTGTTGAATAAGGAGTAAAATAAGACTAAAT
GGCTAGCAAAAAGTACAGTGACGTGAATCTTTACGATCTTCTGGGCATTT
CTCTCGAGTCTGATCAAAATGAGATACGCAAGGCGTACCGCAAGAAGGCC
CTCGAGTGCCATCCCGACAAGAATCCGGACAATCCGAAGGCAGTCGAGCG
CTTCCATGAGTTGTCCAAGGCTCTGGAGATCCTCACGGATGAATCCGCGC
GCGCAGCTTATGACAAAGTGCTGAAGGCCAAGAAGGCGGCGGAGCTGAGG
AGTCGCCAACTGGACGGGAAGCGGCAGAAGCTGAAGCTGGAACTGGAGGA
ACGTGAACGGGCGGCACTGCACAAACTGGCGAAGAGCCAACCCTACAGCA
CGGTGGCCAAAAGCGACGAGGAGGTGCTGCATGAGCAGATCGAGCGGTTG
CGACGCGAGGGCTCCCGTCTGCTGGAGGAGGAGCAGCGAGCCATGCAGGA
GCAGTTCCGGCGGAATCACGCGGAGCAACAGAAACTGCAGCAACAGCCGG
TCCAGTTTGATTCCGCCCAGCATCGCATCAAGATGAAGTGGAAGGCCGAA
CCTGGCCAGGATTACACACAGCAAGAGCTGCTCAAGTATCTGAAGAAGTA
CGGCGACGTGGTGGCCCTGGTGGTCAACAGCAAGCGACGCGGACGCGCCA
TGGTGGAGCTGGCCACGCGCGAAGCCTGCGACATGGTCTTGGCCTACGAA
AAAGGCGATCCCGCCAAGCCGCTGCACTTCGAGTGGGTAACGCCGCCGGC
GGCAGACAAGCAGACAACCAAATCGGCCACCACTGGGTGCAGTGCGTCAT
CCACCGACTACGAGGACCTGGTCATGCGAAAGCTGCGCCAAGCTGAGGAA
CGTAAGAGACTCATTGAGCAGATGATGAAGGACGAGGAGGGCGAATGAAA
TAAGATTTAGTTAGGCTCAACATTTAATTTACTTTAATTGGACTAATATT
AATGTTTGAAAATGTCTCAATTTAGCAACTATGCAGCTGATTTATAATAC
ATTTACATTTAAAATAGTTTTTAATTTATGTAAATTTGGTTATTAATTAT
TTTTTGAAAAACCGCAAAAATAAAAAAAAGTTTAAATCAGAAAAAAAAAA
AAAAAA

RE47242.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17187-RA 1240 CG17187-RA 1..1240 1..1240 6170 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7056201..7057439 1240..1 6060 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11230615..11231856 1242..1 6180 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10971446..10972687 1242..1 6180 99.8 Minus
Blast to na_te.dros performed 2019-03-16 20:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6651..6791 504..647 110 54.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6899 569..731 110 54.2 Plus

RE47242.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:02:12 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7056301..7057439 1..1139 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:11 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..900 149..1048 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:18 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..900 149..1048 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:03 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..900 149..1048 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:25 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..900 149..1048 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:50:29 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..900 149..1048 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:07:40 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..1240 1..1240 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:18 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..1240 1..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:03 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 24..1263 1..1240 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:25 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 1..1240 1..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:29 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
CG17187-RA 24..1263 1..1240 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:12 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11230617..11231856 1..1240 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:12 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11230617..11231856 1..1240 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:12 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11230617..11231856 1..1240 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:03 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7056339..7057578 1..1240 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:17 Download gff for RE47242.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10971448..10972687 1..1240 99   Minus

RE47242.hyp Sequence

Translation from 148 to 1047

> RE47242.hyp
MASKKYSDVNLYDLLGISLESDQNEIRKAYRKKALECHPDKNPDNPKAVE
RFHELSKALEILTDESARAAYDKVLKAKKAAELRSRQLDGKRQKLKLELE
ERERAALHKLAKSQPYSTVAKSDEEVLHEQIERLRREGSRLLEEEQRAMQ
EQFRRNHAEQQKLQQQPVQFDSAQHRIKMKWKAEPGQDYTQQELLKYLKK
YGDVVALVVNSKRRGRAMVELATREACDMVLAYEKGDPAKPLHFEWVTPP
AADKQTTKSATTGCSASSTDYEDLVMRKLRQAEERKRLIEQMMKDEEGE*

RE47242.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17187-PA 299 CG17187-PA 1..299 1..299 1519 100 Plus
mrj-PA 259 CG8448-PA 2..67 9..73 171 51.5 Plus
mrj-PC 259 CG8448-PC 2..67 9..73 171 51.5 Plus
mrj-PB 259 CG8448-PB 2..67 9..73 171 51.5 Plus
mrj-PD 259 CG8448-PD 2..67 9..73 171 51.5 Plus

RE47242.pep Sequence

Translation from 148 to 1047

> RE47242.pep
MASKKYSDVNLYDLLGISLESDQNEIRKAYRKKALECHPDKNPDNPKAVE
RFHELSKALEILTDESARAAYDKVLKAKKAAELRSRQLDGKRQKLKLELE
ERERAALHKLAKSQPYSTVAKSDEEVLHEQIERLRREGSRLLEEEQRAMQ
EQFRRNHAEQQKLQQQPVQFDSAQHRIKMKWKAEPGQDYTQQELLKYLKK
YGDVVALVVNSKRRGRAMVELATREACDMVLAYEKGDPAKPLHFEWVTPP
AADKQTTKSATTGCSASSTDYEDLVMRKLRQAEERKRLIEQMMKDEEGE*

RE47242.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18251-PA 299 GF18251-PA 1..297 1..298 1201 80.2 Plus
Dana\GF10972-PA 250 GF10972-PA 18..80 11..73 163 47.6 Plus
Dana\GF15647-PA 391 GF15647-PA 4..65 9..73 155 47.7 Plus
Dana\GF10450-PA 354 GF10450-PA 4..66 10..73 153 48.4 Plus
Dana\GF12761-PA 351 GF12761-PA 2..66 9..72 150 49.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17232-PA 299 GG17232-PA 1..299 1..299 1483 94 Plus
Dere\GG16248-PA 249 GG16248-PA 18..80 11..73 160 46 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 4..66 10..73 158 50 Plus
Dere\GG10228-PA 389 GG10228-PA 3..65 8..73 156 47 Plus
Dere\GG22292-PA 353 GG22292-PA 2..66 9..72 152 49.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17349-PA 307 GH17349-PA 1..307 1..299 1140 73.9 Plus
Dgri\GH16902-PA 127 GH16902-PA 4..66 10..73 160 45.3 Plus
Dgri\GH16687-PA 262 GH16687-PA 18..80 11..73 160 46 Plus
Dgri\GH10346-PA 397 GH10346-PA 3..65 8..73 155 48.5 Plus
Dgri\GH11226-PA 355 GH11226-PA 25..88 10..73 152 42.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17187-PA 299 CG17187-PA 1..299 1..299 1519 100 Plus
mrj-PA 259 CG8448-PA 2..67 9..73 171 51.5 Plus
mrj-PC 259 CG8448-PC 2..67 9..73 171 51.5 Plus
mrj-PB 259 CG8448-PB 2..67 9..73 171 51.5 Plus
mrj-PD 259 CG8448-PD 2..67 9..73 171 51.5 Plus
mrj-PG 346 CG8448-PG 2..66 9..72 163 50.8 Plus
mrj-PH 346 CG8448-PH 2..66 9..72 163 50.8 Plus
mrj-PE 346 CG8448-PE 2..66 9..72 163 50.8 Plus
Csp-PA 223 CG6395-PA 17..79 10..72 161 46 Plus
Csp-PC 228 CG6395-PC 17..79 10..72 161 46 Plus
Csp-PE 244 CG6395-PE 17..79 10..72 161 46 Plus
Csp-PD 244 CG6395-PD 17..79 10..72 161 46 Plus
Csp-PF 249 CG6395-PF 17..79 10..72 161 46 Plus
Csp-PB 249 CG6395-PB 17..79 10..72 161 46 Plus
shv-PA 354 CG4164-PA 16..88 1..73 153 35.6 Plus
DnaJ-H-PA 389 CG9828-PA 3..65 8..73 152 47 Plus
DnaJ-H-PB 389 CG9828-PB 3..65 8..73 152 47 Plus
DnaJ-H-PC 440 CG9828-PC 3..65 8..73 152 47 Plus
DnaJ-1-PA 334 CG10578-PA 4..65 10..72 151 46 Plus
DnaJ-1-PB 334 CG10578-PB 4..65 10..72 151 46 Plus
CG2887-PA 342 CG2887-PA 6..65 12..72 150 49.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23888-PA 301 GI23888-PA 1..298 1..296 1110 75.3 Plus
Dmoj\GI11373-PA 249 GI11373-PA 17..79 11..73 162 46 Plus
Dmoj\GI18961-PA 355 GI18961-PA 2..66 9..72 153 50.8 Plus
Dmoj\GI13174-PA 352 GI13174-PA 4..66 10..73 150 46.9 Plus
Dmoj\GI21690-PA 355 GI21690-PA 25..89 10..74 148 41.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12026-PA 295 GL12026-PA 1..293 1..298 1171 75.9 Plus
Dper\GL20793-PA 158 GL20793-PA 18..80 11..73 158 46 Plus
Dper\GL19053-PA 132 GL19053-PA 2..92 8..99 152 38 Plus
Dper\GL20776-PA 230 GL20776-PA 4..90 10..93 152 40.9 Plus
Dper\GL10681-PA 357 GL10681-PA 2..66 9..72 152 49.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14374-PA 295 GA14374-PA 1..293 1..298 1174 75.9 Plus
Dpse\GA19562-PA 250 GA19562-PA 18..80 11..73 159 46 Plus
Dpse\GA25325-PA 132 GA25325-PA 2..92 8..99 152 38 Plus
Dpse\GA10408-PA 353 GA10408-PA 4..90 10..93 152 40.9 Plus
Dpse\GA21086-PA 357 GA21086-PA 2..66 9..72 152 49.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26112-PA 299 GM26112-PA 1..299 1..299 1513 96 Plus
Dsec\GM22437-PA 249 GM22437-PA 18..80 11..73 160 46 Plus
Dsec\GM20081-PA 344 GM20081-PA 2..66 9..72 154 49.2 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 4..66 10..73 153 48.4 Plus
Dsec\GM25845-PA 389 GM25845-PA 3..65 8..73 148 47 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18742-PA 299 GD18742-PA 1..299 1..299 1512 96 Plus
Dsim\GD17653-PA 189 GD17653-PA 19..81 11..73 159 46 Plus
Dsim\GD25559-PA 346 GD25559-PA 2..66 9..72 153 49.2 Plus
Dsim\DnaJ-1-PA 352 GD13179-PA 4..66 10..73 152 48.4 Plus
Dsim\GD22085-PA 389 GD22085-PA 3..65 8..73 149 47 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23980-PA 299 GJ23980-PA 1..299 1..299 1069 72.5 Plus
Dvir\GJ11627-PA 245 GJ11627-PA 18..80 11..73 162 46 Plus
Dvir\GJ11775-PA 124 GJ11775-PA 4..66 10..73 160 45.3 Plus
Dvir\GJ21568-PA 352 GJ21568-PA 2..66 9..72 152 49.2 Plus
Dvir\GJ10994-PA 393 GJ10994-PA 3..65 8..73 150 45.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11947-PA 290 GK11947-PA 1..290 1..297 1052 71.9 Plus
Dwil\GK17108-PA 253 GK17108-PA 18..80 11..73 160 46 Plus
Dwil\GK19161-PA 125 GK19161-PA 4..67 10..74 158 49.2 Plus
Dwil\GK17894-PA 352 GK17894-PA 2..66 9..72 152 49.2 Plus
Dwil\GK13822-PA 226 GK13822-PA 27..93 9..75 149 41.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24634-PA 296 GE24634-PA 1..296 1..299 1481 95.3 Plus
Dyak\GE22607-PA 249 GE22607-PA 18..80 11..73 160 46 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 4..66 10..73 159 50 Plus
Dyak\GE11908-PA 389 GE11908-PA 3..65 8..73 153 47 Plus
Dyak\GE14089-PA 351 GE14089-PA 2..66 9..72 153 49.2 Plus