Clone RE47284 Report

Search the DGRC for RE47284

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:472
Well:84
Vector:pFlc-1
Associated Gene/TranscriptCG2680-RB
Protein status:RE47284.pep: gold
Preliminary Size:1011
Sequenced Size:1198

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2680 2002-01-01 Sim4 clustering to Release 2
CG2680 2002-06-04 Blastp of sequenced clone
CG2680 2008-04-29 Release 5.5 accounting
CG2680 2008-08-15 Release 5.9 accounting
CG2680 2008-12-18 5.12 accounting

Clone Sequence Records

RE47284.complete Sequence

1198 bp (1198 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118628

> RE47284.complete
AGTCGGCTGTGGAATTTCCGTGCGCGCGCAACCAGCATCCAATTCGTTCC
TGTAAGCCAAAAAACCAACATTACCATGTCGCCACCACGACACATTTTGA
AGCTCAGCCTCGAGGAGCAGCGGCAGTTCATCGATTCCTTCGATTTGGTG
ATCAGCGACTGCGATGGCGTCGTCTGGCTCCTGGTGGGCTGGATTCCCAA
CACGGGAGCCGCCGTCAATGCCTTGAAAGCGGCCGGCAAGCAGATCAAGT
TCGTGTCGAACAACAGCTTCCGGTCCGAGGAGGATTACATGGAGAAGTTT
CGCCACATCGGCGCCAAGAACGTCCAGGAGGACGACATCGTTCATCCGGT
GAAGACCATTGTCCGGTACCTGAAGAAGCACAAGCCGGGGGAGCGGGTAT
ACTCCCTCATGTCCCTCGAAGCGAACGAAACGTTACGTAAGCACAACATC
GAGTTTGAATCGCTGCAAGTCAAGGAGCACCTGACGGCCGCGTCGCTGGT
GGATCACCTGGCCATTGAAAAGCCCGTGGGCGCTGTGCTATTCGACATCC
ACTTGGACCTCTCGTACGTGGAGCTGGCGAAGGCCATTAGGCACCTTCAG
GAGAATGACGACTGCCAGTTGATAGCCGGCGGCAGCGATGTCATCATGCC
ACTGGCGGAGAATCTCAATGTGGCCGGGTTCTTTGACTTCCTGGAGCACG
TTAAACGCTACACGCAACGCGAGGCCACGTTTCTGGGCAAGCCGTCTCCC
ATTTTGGGCGAAATGTTTGGCGAAATGTTCGAGATTCGTGATTGCAAGCG
CTGCATCTTCATCGGGGACACACTGGTGCAGGATGTGCAGTTCGGCAAGG
CCTGCGGCTTCCAGTCCCTGCTGGTACTTAGCGGCTGCCTAACAAAGGAG
GACATGCTGAACGCCCCGGTGGAAGCGCAGCCGGATTACTATGCCGATAG
CCTGGCCGACTTCACGCAGCTGCTTGAAAATATTCAAAAATAGGTTGAGG
ATCGTGTGCCGCAGGGAAATTACGAGAAACGTGCTACCTGAAATTAACTA
TATCAACCCAAGATAAAGTAGTAATGTTCTTAAATCGAAAACCGATCCAC
CGTTATTGCTTATTCGATATAATTATTGTTGAATTTTAAAGTTTATAAAT
GTCTACGAAATTGATGCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

RE47284.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2680.a 1685 CG2680.a 502..1675 1..1174 5870 100 Plus
CG2680-RB 1303 CG2680-RB 120..1293 1..1174 5870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2599967..2600673 1171..465 3535 100 Minus
chrX 22417052 chrX 2600769..2601233 465..1 2325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2706148..2706857 1174..465 3550 100 Minus
X 23542271 X 2706953..2707417 465..1 2325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2714246..2714955 1174..465 3550 100 Minus
X 23527363 X 2715051..2715515 465..1 2325 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:15:55 has no hits.

RE47284.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:16:48 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2599967..2600672 466..1171 100 <- Minus
chrX 2600769..2601233 1..465 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:13 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..918 76..993 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:32:38 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..918 76..993 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:59 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..918 76..993 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:23:13 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..918 76..993 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:39 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..918 76..993 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:03:08 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..1171 1..1171 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:32:38 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..1171 1..1171 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:59 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 11..1181 1..1171 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:23:14 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 1..1171 1..1171 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:39 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
CG2680-RB 11..1181 1..1171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:48 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
X 2706151..2706856 466..1171 100 <- Minus
X 2706953..2707417 1..465 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:48 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
X 2706151..2706856 466..1171 100 <- Minus
X 2706953..2707417 1..465 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:48 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
X 2706151..2706856 466..1171 100 <- Minus
X 2706953..2707417 1..465 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:59 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2600184..2600889 466..1171 100 <- Minus
arm_X 2600986..2601450 1..465 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:56:38 Download gff for RE47284.complete
Subject Subject Range Query Range Percent Splice Strand
X 2714249..2714954 466..1171 100 <- Minus
X 2715051..2715515 1..465 100   Minus

RE47284.hyp Sequence

Translation from 0 to 992

> RE47284.hyp
SRLWNFRARATSIQFVPVSQKTNITMSPPRHILKLSLEEQRQFIDSFDLV
ISDCDGVVWLLVGWIPNTGAAVNALKAAGKQIKFVSNNSFRSEEDYMEKF
RHIGAKNVQEDDIVHPVKTIVRYLKKHKPGERVYSLMSLEANETLRKHNI
EFESLQVKEHLTAASLVDHLAIEKPVGAVLFDIHLDLSYVELAKAIRHLQ
ENDDCQLIAGGSDVIMPLAENLNVAGFFDFLEHVKRYTQREATFLGKPSP
ILGEMFGEMFEIRDCKRCIFIGDTLVQDVQFGKACGFQSLLVLSGCLTKE
DMLNAPVEAQPDYYADSLADFTQLLENIQK*

RE47284.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2680-PB 305 CG2680-PB 1..305 26..330 1578 100 Plus
CG15739-PB 308 CG15739-PB 1..305 26..330 491 37.7 Plus
CG15739-PA 308 CG15739-PA 1..305 26..330 491 37.7 Plus
CG10352-PB 315 CG10352-PB 1..295 26..318 388 35.1 Plus
CG5567-PA 330 CG5567-PA 2..324 12..327 297 27.5 Plus

RE47284.pep Sequence

Translation from 0 to 992

> RE47284.pep
SRLWNFRARATSIQFVPVSQKTNITMSPPRHILKLSLEEQRQFIDSFDLV
ISDCDGVVWLLVGWIPNTGAAVNALKAAGKQIKFVSNNSFRSEEDYMEKF
RHIGAKNVQEDDIVHPVKTIVRYLKKHKPGERVYSLMSLEANETLRKHNI
EFESLQVKEHLTAASLVDHLAIEKPVGAVLFDIHLDLSYVELAKAIRHLQ
ENDDCQLIAGGSDVIMPLAENLNVAGFFDFLEHVKRYTQREATFLGKPSP
ILGEMFGEMFEIRDCKRCIFIGDTLVQDVQFGKACGFQSLLVLSGCLTKE
DMLNAPVEAQPDYYADSLADFTQLLENIQK*

RE47284.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22487-PA 305 GF22487-PA 1..305 26..330 1504 90.5 Plus
Dana\GF21574-PA 310 GF21574-PA 4..307 27..330 475 35.4 Plus
Dana\GF21591-PA 273 GF21591-PA 4..273 56..324 340 32.4 Plus
Dana\GF25232-PA 316 GF25232-PA 8..270 31..295 320 30.9 Plus
Dana\GF10230-PA 309 GF10230-PA 15..300 31..321 236 24.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18612-PA 305 GG18612-PA 1..305 26..330 1592 98 Plus
Dere\GG18450-PA 308 GG18450-PA 1..305 26..330 515 39.4 Plus
Dere\GG18824-PA 305 GG18824-PA 22..287 56..319 324 33.7 Plus
Dere\GG15774-PA 315 GG15774-PA 8..309 31..327 306 28.4 Plus
Dere\GG15776-PA 315 GG15776-PA 9..315 32..325 258 27.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11944-PA 305 GH11944-PA 3..305 29..329 1225 74.6 Plus
Dgri\GH12276-PA 311 GH12276-PA 6..305 29..328 526 39.1 Plus
Dgri\GH12470-PA 265 GH12470-PA 4..264 64..323 321 31.3 Plus
Dgri\GH14463-PA 316 GH14463-PA 8..270 31..295 306 31.8 Plus
Dgri\GH14464-PA 314 GH14464-PA 8..310 31..321 254 25.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2680-PB 305 CG2680-PB 1..305 26..330 1578 100 Plus
CG15739-PB 308 CG15739-PB 1..305 26..330 491 37.7 Plus
CG15739-PA 308 CG15739-PA 1..305 26..330 491 37.7 Plus
CG10352-PB 315 CG10352-PB 1..295 26..318 388 35.1 Plus
CG5567-PA 330 CG5567-PA 2..324 12..327 297 27.5 Plus
CG32488-PB 307 CG32488-PB 9..306 32..325 249 26.2 Plus
CG32488-PA 307 CG32488-PA 9..306 32..325 249 26.2 Plus
CG32487-PA 320 CG32487-PA 16..317 32..327 240 26.5 Plus
CG5577-PB 315 CG5577-PB 12..315 35..325 233 27.1 Plus
CG5577-PA 315 CG5577-PA 12..315 35..325 233 27.1 Plus
CG11291-PA 308 CG11291-PA 8..306 31..325 184 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14731-PA 303 GI14731-PA 3..303 29..329 1283 77.7 Plus
Dmoj\GI10972-PA 323 GI10972-PA 7..314 18..325 470 35.3 Plus
Dmoj\GI11147-PA 305 GI11147-PA 33..300 56..321 342 32.2 Plus
Dmoj\GI11145-PA 1237 GI11145-PA 966..1232 57..321 325 31.6 Plus
Dmoj\GI13608-PA 316 GI13608-PA 8..303 31..321 323 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19811-PA 305 GL19811-PA 1..305 26..330 1483 88.2 Plus
Dper\GL20155-PA 312 GL20155-PA 3..309 25..330 498 35.6 Plus
Dper\GL20404-PA 302 GL20404-PA 1..299 26..322 430 35.6 Plus
Dper\GL22743-PA 314 GL22743-PA 10..272 31..295 287 28.5 Plus
Dper\GL18197-PA 321 GL18197-PA 16..312 31..321 260 27.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15426-PA 305 GA15426-PA 1..305 26..330 1488 88.5 Plus
Dpse\GA13927-PA 312 GA13927-PA 3..309 25..330 504 35.9 Plus
Dpse\GA29193-PA 357 GA29193-PA 40..354 30..322 389 32.9 Plus
Dpse\GA18976-PA 314 GA18976-PA 10..272 31..295 287 28.5 Plus
Dpse\GA18982-PA 313 GA18982-PA 8..313 31..325 279 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18860-PA 305 GM18860-PA 1..305 26..330 1600 98 Plus
Dsec\GM13116-PA 308 GM13116-PA 1..305 26..330 504 37.4 Plus
Dsec\GM13036-PA 286 GM13036-PA 4..268 57..319 320 34.6 Plus
Dsec\GM13035-PA 300 GM13035-PA 18..282 57..319 320 34.6 Plus
Dsec\GM24299-PA 315 GM24299-PA 8..309 31..327 305 28.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16358-PA 305 GD16358-PA 1..305 26..330 1618 99 Plus
Dsim\GD17054-PA 300 GD17054-PA 2..297 35..330 469 36.9 Plus
Dsim\GD15960-PA 305 GD15960-PA 1..287 35..319 392 36.1 Plus
Dsim\GD12368-PA 315 GD12368-PA 8..309 31..327 305 28.4 Plus
Dsim\GD13365-PA 307 GD13365-PA 9..306 32..325 252 27.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18537-PA 304 GJ18537-PA 3..304 29..330 1305 77.8 Plus
Dvir\GJ18530-PA 311 GJ18530-PA 1..305 24..328 505 38.1 Plus
Dvir\GJ18523-PA 278 GJ18523-PA 8..274 56..320 357 35.1 Plus
Dvir\GJ13945-PA 310 GJ13945-PA 8..306 31..321 285 27.9 Plus
Dvir\GJ13944-PA 316 GJ13944-PA 8..270 31..295 285 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20059-PA 305 GK20059-PA 1..305 26..329 1393 83.6 Plus
Dwil\GK25499-PA 314 GK25499-PA 2..307 22..327 491 37.7 Plus
Dwil\GK25422-PA 335 GK25422-PA 30..330 29..321 401 33.9 Plus
Dwil\GK21181-PA 318 GK21181-PA 10..305 31..321 296 28 Plus
Dwil\GK17623-PA 311 GK17623-PA 8..310 31..325 268 27.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16927-PA 305 GE16927-PA 1..305 26..330 1607 98.4 Plus
Dyak\GE15672-PA 308 GE15672-PA 1..305 26..330 509 38.4 Plus
Dyak\GE17588-PA 305 GE17588-PA 1..287 35..319 385 35.1 Plus
Dyak\GE22109-PA 315 GE22109-PA 8..309 31..327 309 28.8 Plus
Dyak\GE22110-PA 315 GE22110-PA 9..315 32..325 258 27.5 Plus