RE47391.complete Sequence
2297 bp (2297 high quality bases) assembled on 2002-10-19
GenBank Submission: BT001662
> RE47391.complete
AGTCTTTAGTTTTCAGTGCTCAGTGTTCAGTGTTCAGTTTCCAGATCCCT
TGATTTCTGGTCTTTGGTTCTGGCTTTGGCTTTGGGGAGAAGGAACAACT
AAATGCCAGGGCACATATAAATTTTGTGATTAAGAGCCATCTTATCATTA
TTATAGAGTGAGCGCACGCTCGGTTCGGGTTGTGACTCTTGAGATGGGGC
CAAAAAGGCACTGGGAACCTGGGTGGGGATGTGAAACAAAAAGGCTGAAA
AAAAGAGTGTACATCTGTATACATTTATATATATATATATATATATATAC
ATATCTGTATATAGATTTATATGTGTGTGGGGAAGAAGAAATACCAAGCC
AAACACTCACACACGATGAGATATTTCAAAATGTAGCCGTGCGTGAGTGC
GGGTCGGATTTTTCGATTTTCGATGGGCATGGGTATGGATATGGGTATGG
GTATGTGTGTGCGCCCCTCGCAGGCATTATAGGATTTAGTTTTTGGGATT
TCGATTTCTCACACAGGGAGCGGGGTCGCAAGAAATGTGTAGAACATATT
GTTGCTGTTGGGTTGCGTTTCCGAAGATTTCCTGTGAAATACTTTAAGCC
CAGAGCCTCCATCTCCAACTCCACTCCATTCGGTTTCGGTTTTTGGTTCT
CTGGTTTTGATTCTGATTCCGATTCTGATTCTGTTTCGGCTTCGGCTTGT
TTTGTTTTTTTTTCTGTGTTTTGGGTTAAACATACTTGAAATTCTTGTTT
CAATTTCGGCTCCGGCGGATGGGGGCCTCTTGGTTCGTAATTTAATACGC
TTTCAAAATTAAGAAAAATACACACATCTACCAAATACCAAATCGATATG
GCCGGGTAGGCCCCAAAGGTCACAGCCAAAAAGATTCAAATTCGAAATTA
GTAGGGAGAACATAAATAACGGCGAACAACAAATACCGCACTCCCCGCCT
TAGAAAAGTGTGTTTTTTGTCTATTTCTTGAGTTGGTTTCGAGTTGGAAA
TATTTCATTATTATTGGACAGTTGCCGAGCGGCTCAGAGATTCATTTCAT
CTGATCTCCCATCGCATCTGGGTTCTTAGGTCTTTTCTTATATTTTAATT
TATGCTGTCTGTTACTTAACTTGATTTGCATATTCTCAAGCTGGAGGGTA
GAATAAAATCGACTTGTATAGTCGTTTTTTTTTTTTGTTTTTTTTTGCTT
CTCGTTTTTCAATCTAATAAACCATTTTGTTGCTAAGTACAGCGGCTGAA
TAAATGCGAATTTTTTGCTCACCCTCACTTTGAGTTTTTGCACTTTGCTT
CCCGTTTTCTCTTTCTTTATTGCACGCCCTCTCGCTCTCTTTCCCTCGGT
CCCTCTCTTTCTGGCCAGACTTTTCCCCTCCAATATGGCCGACAAAGCTG
CACAAAATGGGGTAACACCAACATACAGAGAGAAAAAAGATTTTCACACA
CAGGCGGCGGAGAGTAAGGGAAAACTACAGGAAATTACCAGCAAAATAAA
AAAAAAACGAAGCGAAATCGGGGAAAAAATGCAGCAAATGTTTTCTTGTC
TTCATGTTTTCGTGACTGATGCGTTATAATTTTCAGGCTGTTAAAAAAAC
ATTTTCTGTGTGTTATTAACAAAAAATGTATGCAAAAAGCAGCGGGAGGA
AGCTGAAGAAGAGGAAGCACAACAGCCCCAATGTCTGGGACCGCCTTGAA
TTTGGCGCGTTGTCTGCGCCACAACTGCAATTTTGATGTCAGAAAAACTG
AACTGCAGACGTTTAATTTTTGCCTTTTTCTTTTTGCCGGGCTTGTATTT
TTATTTGGTTTGGTTCGTGTGCTAAACGAAATTACACGCTTATGAATTGC
TTAATATCGTGTAGCACCAGGCATAGAATAAAAAATGTGTGGGTAATAAG
CCAAAAAAAAAAAAAACGGAGCAATCAAATACGAGTCACTCACCTGTGGG
TCCCACATCTGATATCCGAGTGTTTTTTTTTTCCATTCGAAAAGGTGTCA
ATGCGAGTGCATAAAGAGTAATGAATACCTGAAAAGCCAAAAACAAATTA
AACCCGCTGCCATTAATCTTCCCGGCCAACTCCCTTGGAGGCAGATCGAC
TCCAGAGCTCGGTTTTCAGGCAGTTCCTGTCCCGGTTTATTCTGGGACTC
GAAAACCTGGATACGATCCACCAAAGGCAAGGTGAGATGCATTTTAACAT
GTCTCATGAATTCGAGCGGATTGAGTGCACAGAAATCTTGTCTTGCCGCC
ATTTGCATACGGCTTAAAAAAACAGAATACAAAAAAAAAAAAAAAAA
RE47391.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 18:37:42 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr3R | 27901430 | chr3R | 6352549..6354809 | 2280..1 | 10725 | 98.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:58:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10526863..10529156 | 2294..1 | 11345 | 99.8 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 31820162 | 3R | 10267694..10269987 | 2294..1 | 11365 | 99.8 | Minus |
Blast to na_te.dros performed 2019-03-16 12:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib2 | 2844 | transib2 TRANSIB2 2844bp | 2529..2568 | 656..695 | 119 | 77.5 | Plus |
RE47391.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:28:00 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr3R | 6352549..6353468 | 1363..2280 | 99 | == | Minus |
| chr3R | 6353532..6354108 | 722..1299 | 99 | == | Minus |
| chr3R | 6354198..6354501 | 323..632 | 97 | == | Minus |
| chr3R | 6354543..6354809 | 1..267 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:00:16 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 18:00:16 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:00 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10526877..10529156 | 1..2280 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:00 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10526877..10529156 | 1..2280 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:00 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10526877..10529156 | 1..2280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:21:41 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6352599..6354878 | 1..2280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:21:41 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6352599..6354878 | 1..2280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:21:41 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6352599..6354878 | 1..2280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:46 Download gff for
RE47391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10267708..10269987 | 1..2280 | 99 | | Minus |
RE47391.pep Sequence
Translation from 193 to 738
> RE47391.pep
MGPKRHWEPGWGCETKRLKKRVYICIHLYIYIYIYTYLYIDLYVCGEEEI
PSQTLTHDEIFQNVAVRECGSDFSIFDGHGYGYGYGYVCAPLAGIIGFSF
WDFDFSHRERGRKKCVEHIVAVGLRFRRFPVKYFKPRASISNSTPFGFGF
WFSGFDSDSDSDSVSASACFVFFSVFWVKHT*
Sequence RE47391.pep has no blast hits.
RE47391.hyp Sequence
Translation from 193 to 738
> RE47391.hyp
MGPKRHWEPGWGCETKRLKKRVYICIHLYIYIYIYTYLYIDLYVCGEEEI
PSQTLTHDEIFQNVAVRECGSDFSIFDGHGYGYGYGYVCAPLAGIIGFSF
WDFDFSHRERGRKKCVEHIVAVGLRFRRFPVKYFKPRASISNSTPFGFGF
WFSGFDSDSDSDSVSASACFVFFSVFWVKHT*
Sequence RE47391.hyp has no blast hits.
