BDGP Sequence Production Resources |
Search the DGRC for RE47570
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 475 |
Well: | 70 |
Vector: | pFlc-1 |
Associated Gene/Transcript | msd5-RA |
Protein status: | RE47570.pep: gold |
Preliminary Size: | 773 |
Sequenced Size: | 855 |
Gene | Date | Evidence |
---|---|---|
CG2213 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2213 | 2002-01-03 | Blastp of sequenced clone |
CG2213 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2213 | 2008-04-29 | Release 5.5 accounting |
CG2213 | 2008-08-15 | Release 5.9 accounting |
CG2213 | 2008-12-18 | 5.12 accounting |
855 bp (855 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075493
> RE47570.complete ATCAAAGGAGAAGTGAAGCGTAAACAATAAAAATGGAAACTAATGTAGAT TTCAGCAGCATTTCATCCAAGTTGTACAGAAAGTACGCGCAACATGTGAG AAACCTAAAGGACGTGTGCGTATCCAAGACGGTGATGAAACCGGGGGCCT TCTTTGACAGCCTGCAGCAGATGATGGAGGAGGAGGCAGCAGCCACTACG CCCCCGAGGGATCTTAGCTCGGTAGCCGACTATGCGGAGCTCTTCAAGAC CTTGGAAGAGTACCCGGCCAACCTGCAGAAAATGCCCAAGAAGCGGGAGC TACAACGTACCAACTCAACGCTCCTGCGAGGAGCAGACGAGTCGGTGGCC ATGGGCATCAACACATCCAACGTTTCGCTGAGTCTGACGCGTCTGGAGGA GCAGCGCAGTGCCGTGGACGTGTACAATGATTTTAAGGGTTTCCAGCGAA AGCTGGCCAAGATCTACGACGAGGCAGCCGCTCTGGACACCACAGAATCC ATATACAAGCAGAAGCTGACGCAGCTCCATGGATTTGCGCAGCAGCTGGA AAAGCTCATGCCAACCGGCGGTGAGTCTCCGCCAGATGCTTTTACATCCG AGCAGCAGGAGAAGCTTCTGACCATAGCCGCCAATATGGAACAGCTCAAC TACCTGCGCTCCAACAGCCTCCAGCTGCCCAATCCCAATGAGATACTCGC CACCGGGAGTCTTGCCGCTCGCCTGGAGATGTTCGTAGAGGTGCTTACCT ATACGCTTCTCCAAGTCAGCAGCTACAATATGGCCATGATTTGAAAACCT CGCTTAAAGAGCTTTAAATACAAATCAAATGTTTAATTTAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msd5-RA | 853 | msd5-RA | 8..847 | 1..840 | 4200 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1331817..1332655 | 839..1 | 4000 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1332306..1333145 | 840..1 | 4200 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1332306..1333145 | 840..1 | 4200 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1331825..1332655 | 1..831 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2213-RA | 1..762 | 33..794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msd5-RA | 1..762 | 33..794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msd5-RA | 1..762 | 33..794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2213-RA | 1..762 | 33..794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msd5-RA | 1..762 | 33..794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2213-RA | 8..846 | 1..839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msd5-RA | 8..846 | 1..839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msd5-RA | 2..840 | 1..839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2213-RA | 8..846 | 1..839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msd5-RA | 2..840 | 1..839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1332307..1333145 | 1..839 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1332307..1333145 | 1..839 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1332307..1333145 | 1..839 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1332307..1333145 | 1..839 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1332307..1333145 | 1..839 | 100 | Minus |
Translation from 32 to 793
> RE47570.pep METNVDFSSISSKLYRKYAQHVRNLKDVCVSKTVMKPGAFFDSLQQMMEE EAAATTPPRDLSSVADYAELFKTLEEYPANLQKMPKKRELQRTNSTLLRG ADESVAMGINTSNVSLSLTRLEEQRSAVDVYNDFKGFQRKLAKIYDEAAA LDTTESIYKQKLTQLHGFAQQLEKLMPTGGESPPDAFTSEQQEKLLTIAA NMEQLNYLRSNSLQLPNPNEILATGSLAARLEMFVEVLTYTLLQVSSYNM AMI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10063-PA | 256 | GF10063-PA | 1..256 | 1..253 | 945 | 71.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14607-PA | 252 | GG14607-PA | 1..252 | 1..253 | 1214 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16229-PA | 211 | GH16229-PA | 1..211 | 35..251 | 465 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msd5-PA | 253 | CG2213-PA | 1..253 | 1..253 | 1260 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13375-PA | 247 | GI13375-PA | 1..244 | 1..248 | 540 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16072-PA | 183 | GL16072-PA | 1..139 | 1..151 | 427 | 55.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28478-PA | 239 | GA28478-PA | 1..239 | 1..251 | 777 | 57.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14220-PA | 253 | GM14220-PA | 1..253 | 1..253 | 1330 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13483-PA | 253 | GD13483-PA | 1..253 | 1..253 | 1324 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13205-PA | 249 | GJ13205-PA | 1..247 | 1..249 | 579 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25456-PA | 256 | GK25456-PA | 7..255 | 3..247 | 455 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20967-PA | 253 | GE20967-PA | 1..253 | 1..253 | 1252 | 92.5 | Plus |
Translation from 32 to 793
> RE47570.hyp METNVDFSSISSKLYRKYAQHVRNLKDVCVSKTVMKPGAFFDSLQQMMEE EAAATTPPRDLSSVADYAELFKTLEEYPANLQKMPKKRELQRTNSTLLRG ADESVAMGINTSNVSLSLTRLEEQRSAVDVYNDFKGFQRKLAKIYDEAAA LDTTESIYKQKLTQLHGFAQQLEKLMPTGGESPPDAFTSEQQEKLLTIAA NMEQLNYLRSNSLQLPNPNEILATGSLAARLEMFVEVLTYTLLQVSSYNM AMI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msd5-PA | 253 | CG2213-PA | 1..253 | 1..253 | 1260 | 100 | Plus |