Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE47909.complete Sequence
1402 bp (1402 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071397
> RE47909.complete
GTATAATTGTTTTAATTTGGTCTTTTTTTGTAGCGTTACTGCTAGTGTTG
CTGTATTAACCTCATAAATATCCTCAGTATCAAAACGTCTTAATAAATTC
ATATGTAAATATGAGTCAAACATTGATCCGTCGTCTCTTCAATCAAGCTT
GTAGCAGAAATATTTTTATTTTGAACCAAAGCTTGTTATCTTCACATGAA
CCCATTTTACCAGGTTACATTGGTTTACGTAATACCAGCTTCTTTAACAA
ATTACCTGCTGAAGACATTTGGCGCGGAGTAACTGCGGTTAGCAATGCTG
GAAAAAAAAGAGGCCGTGGGAAAGGAAGTGGAAAAAAAGTTGCAAAGGAT
CTTAACAAAGGGCAATCTATCGGATTCGGAAAATGCGGTCGCATATGGCC
TGGATTGAATTCACCTCTTATACGAGGAAACGAGTTAATTAATCAGCAGA
AACTCAATGAGAATTTAGATAGAGAAAATGGTATTTTAAAATTACGCGAT
TCAATGGGAAGTTTTAAATTGATGAAACTAAATCCAATAGACCGAGGTTG
GTCTGGAAGTAAAATGCCCGGCCGAAGCATTGGACCTCCTGATCCTGTTG
GCGACGAAGAGTTTGTGTCATTTGATACTAGAGTTTTAGAAAACAAAATT
GTTTTTATTATGAAAGGAAATATGGGAAGAAAACGAAGATATTCCGTTCT
TTCAGTCACGGGAAATGGTAATGGTTTGGCAGGATTCGCTACCGCTAAAG
CGCCAGAAGTTCGTACGGCCCTTCGAAAATCAAAGAACCGAGCAGGACAA
AAACTAATCAATATAAGCCTTTGTGAAAATAGAACAATTTTTCATGACTT
TCGTACAGATTTCGGAAAAACAAAAATTTTTTGTTTTCAGAAACCTGATG
GATACGGCTTAGTCTGTCACCGGGCAATTCAGACAATTTGTAAAGTTATA
GGTATCAAGGATTTATATGCCAAAATTGAGGGGTCTACGAATATCCAGAA
TATTGCAAAGGCATTTTTTATTGGTCTGATGACGCAAAGGTCCTATCAGT
ATATTGCTAACGAAACAAATTCAAACATTGTTCAACTGCAAAAGACAAGA
AATAGATTCATTGATGTAAAAGGAATGCCTTTTCCTAATTCAACTCTAAC
GCAGAACACCCAAGAAATTGACTATATGCATTTCACATTAGGAAATCAAA
TAGTTTTACAGCGAAAAGGCACAGTACCATTTTATGTTTATAGCAAAGGA
CATGACTTGCATCAATTTAAAAAGGAGCGATTTCGGAACCAAGTTAATGT
TCGGCTACACAAGCTAGTTAATGCTTATGATTAATTTATGAAATATTAAA
ACTGTTAAATAAAAATGTAATATTATTAAAAAAAACAAAAAAAAAAAAAA
AA
RE47909.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS5-RA | 1813 | mRpS5-RA | 105..1483 | 2..1380 | 6895 | 100 | Plus |
mRpS5-RC | 1422 | mRpS5-RC | 78..1422 | 33..1377 | 6725 | 100 | Plus |
mRpS5.a | 1194 | mRpS5.a | 66..1194 | 249..1377 | 5630 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 24531314..24532441 | 253..1380 | 5640 | 100 | Plus |
chr3L | 24539361 | chr3L | 24535014..24535939 | 455..1380 | 4630 | 100 | Plus |
chr3LHet | 2555433 | chr3LHet | 895..1820 | 455..1380 | 4615 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 24538512..24539361 | 455..1304 | 4250 | 100 | Plus |
chr3L | 24539361 | chr3L | 24526270..24526520 | 2..252 | 1255 | 100 | Plus |
chr3L | 24539361 | chr3L | 24520662..24520738 | 27..103 | 235 | 87 | Plus |
chr3L | 24539361 | chr3L | 24525193..24525268 | 177..252 | 185 | 82.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CR41597-RA | 1011 | CR41597-RA | 1..842 | 539..1380 | 4195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24542410..24543537 | 253..1380 | 5640 | 100 | Plus |
3L | 28110227 | 3L | 24546110..24547035 | 455..1380 | 4630 | 100 | Plus |
3L | 28110227 | 3L | 24549608..24550533 | 455..1380 | 4630 | 100 | Plus |
3L | 28110227 | 3L | 24553106..24554031 | 455..1380 | 4630 | 100 | Plus |
3L | 28110227 | 3L | 24537366..24537616 | 2..252 | 1255 | 100 | Plus |
3L | 28110227 | 3L | 24531758..24531834 | 27..103 | 235 | 87 | Plus |
3L | 28110227 | 3L | 24536289..24536364 | 177..252 | 185 | 82.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 24535510..24536637 | 253..1380 | 5640 | 100 | Plus |
3L | 28103327 | 3L | 24546206..24547131 | 455..1380 | 4630 | 100 | Plus |
3L | 28103327 | 3L | 24542708..24543633 | 455..1380 | 4630 | 100 | Plus |
3L | 28103327 | 3L | 24539210..24540135 | 455..1380 | 4630 | 100 | Plus |
3L | 28103327 | 3L | 24530466..24530716 | 2..252 | 1255 | 100 | Plus |
3L | 28103327 | 3L | 24524858..24524934 | 27..103 | 235 | 87 | Plus |
3L | 28103327 | 3L | 24529365..24529464 | 154..252 | 190 | 81 | Plus |
Blast to na_te.dros performed 2019-03-16 13:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 4401..4483 | 638..722 | 123 | 64 | Plus |
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 91..194 | 731..838 | 115 | 60.2 | Plus |
RE47909.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:42:21 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 24526269..24526520 | 1..252 | 99 | -> | Plus |
chr3L | 24531314..24532441 | 253..1380 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:25 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 1..1224 | 111..1334 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:33 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 1..1224 | 111..1334 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:09:40 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RC | 1..1224 | 111..1334 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:06 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 1..1224 | 111..1334 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:00 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RC | 1..1224 | 111..1334 | 100 | | Plus |
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:59:12 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CR41597-RA | 1..842 | 539..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:27:56 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 35..1411 | 1..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:33 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 35..1411 | 1..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:09:40 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 3..1379 | 1..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:07 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 35..1411 | 1..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:00 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS5-RA | 3..1379 | 1..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:21 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24537365..24537616 | 1..252 | 99 | -> | Plus |
3L | 24542410..24543537 | 253..1380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:21 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24537365..24537616 | 1..252 | 99 | -> | Plus |
3L | 24542410..24543537 | 253..1380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:21 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24537365..24537616 | 1..252 | 99 | -> | Plus |
3L | 24542410..24543537 | 253..1380 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:09:40 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24530464..24530715 | 1..252 | 99 | -> | Plus |
arm_3L | 24535510..24536637 | 253..1380 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:45 Download gff for
RE47909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24530465..24530716 | 1..252 | 99 | -> | Plus |
3L | 24535510..24536637 | 253..1380 | 100 | | Plus |
RE47909.pep Sequence
Translation from 110 to 1333
> RE47909.pep
MSQTLIRRLFNQACSRNIFILNQSLLSSHEPILPGYIGLRNTSFFNKLPA
EDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLN
SPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMKLNPIDRGWSGS
KMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVT
GNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTD
FGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGSTNIQNIAK
AFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLTQNT
QEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQVNVRLH
KLVNAYD*
RE47909.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS5-PA | 407 | CG40049-PA | 1..407 | 1..407 | 2130 | 100 | Plus |
mRpS5-PC | 407 | CG40049-PC | 1..407 | 1..407 | 2130 | 100 | Plus |
mRpS5-PD | 47 | CG40049-PD | 1..47 | 1..47 | 240 | 100 | Plus |
RE47909.hyp Sequence
Translation from 110 to 1333
> RE47909.hyp
MSQTLIRRLFNQACSRNIFILNQSLLSSHEPILPGYIGLRNTSFFNKLPA
EDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLN
SPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMKLNPIDRGWSGS
KMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVT
GNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTD
FGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGSTNIQNIAK
AFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLTQNT
QEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQVNVRLH
KLVNAYD*
RE47909.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS5-PA | 407 | CG40049-PA | 1..407 | 1..407 | 2130 | 100 | Plus |
mRpS5-PC | 407 | CG40049-PC | 1..407 | 1..407 | 2130 | 100 | Plus |
mRpS5-PD | 47 | CG40049-PD | 1..47 | 1..47 | 240 | 100 | Plus |