Clone RE47909 Report

Search the DGRC for RE47909

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:479
Well:9
Vector:pFlc-1
Associated Gene/TranscriptmRpS5-RA
Protein status:RE47909.pep: gold
Sequenced Size:1402

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG40049 2001-12-16 Blastp of sequenced clone
CG17427 2002-01-01 Sim4 clustering to Release 2
CG40049 2003-01-01 Sim4 clustering to Release 3
mRpS5 2008-04-29 Release 5.5 accounting
mRpS5 2008-08-15 Release 5.9 accounting
mRpS5 2008-12-18 5.12 accounting

Clone Sequence Records

RE47909.complete Sequence

1402 bp (1402 high quality bases) assembled on 2001-12-16

GenBank Submission: AY071397

> RE47909.complete
GTATAATTGTTTTAATTTGGTCTTTTTTTGTAGCGTTACTGCTAGTGTTG
CTGTATTAACCTCATAAATATCCTCAGTATCAAAACGTCTTAATAAATTC
ATATGTAAATATGAGTCAAACATTGATCCGTCGTCTCTTCAATCAAGCTT
GTAGCAGAAATATTTTTATTTTGAACCAAAGCTTGTTATCTTCACATGAA
CCCATTTTACCAGGTTACATTGGTTTACGTAATACCAGCTTCTTTAACAA
ATTACCTGCTGAAGACATTTGGCGCGGAGTAACTGCGGTTAGCAATGCTG
GAAAAAAAAGAGGCCGTGGGAAAGGAAGTGGAAAAAAAGTTGCAAAGGAT
CTTAACAAAGGGCAATCTATCGGATTCGGAAAATGCGGTCGCATATGGCC
TGGATTGAATTCACCTCTTATACGAGGAAACGAGTTAATTAATCAGCAGA
AACTCAATGAGAATTTAGATAGAGAAAATGGTATTTTAAAATTACGCGAT
TCAATGGGAAGTTTTAAATTGATGAAACTAAATCCAATAGACCGAGGTTG
GTCTGGAAGTAAAATGCCCGGCCGAAGCATTGGACCTCCTGATCCTGTTG
GCGACGAAGAGTTTGTGTCATTTGATACTAGAGTTTTAGAAAACAAAATT
GTTTTTATTATGAAAGGAAATATGGGAAGAAAACGAAGATATTCCGTTCT
TTCAGTCACGGGAAATGGTAATGGTTTGGCAGGATTCGCTACCGCTAAAG
CGCCAGAAGTTCGTACGGCCCTTCGAAAATCAAAGAACCGAGCAGGACAA
AAACTAATCAATATAAGCCTTTGTGAAAATAGAACAATTTTTCATGACTT
TCGTACAGATTTCGGAAAAACAAAAATTTTTTGTTTTCAGAAACCTGATG
GATACGGCTTAGTCTGTCACCGGGCAATTCAGACAATTTGTAAAGTTATA
GGTATCAAGGATTTATATGCCAAAATTGAGGGGTCTACGAATATCCAGAA
TATTGCAAAGGCATTTTTTATTGGTCTGATGACGCAAAGGTCCTATCAGT
ATATTGCTAACGAAACAAATTCAAACATTGTTCAACTGCAAAAGACAAGA
AATAGATTCATTGATGTAAAAGGAATGCCTTTTCCTAATTCAACTCTAAC
GCAGAACACCCAAGAAATTGACTATATGCATTTCACATTAGGAAATCAAA
TAGTTTTACAGCGAAAAGGCACAGTACCATTTTATGTTTATAGCAAAGGA
CATGACTTGCATCAATTTAAAAAGGAGCGATTTCGGAACCAAGTTAATGT
TCGGCTACACAAGCTAGTTAATGCTTATGATTAATTTATGAAATATTAAA
ACTGTTAAATAAAAATGTAATATTATTAAAAAAAACAAAAAAAAAAAAAA
AA

RE47909.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS5-RA 1813 mRpS5-RA 105..1483 2..1380 6895 100 Plus
mRpS5-RC 1422 mRpS5-RC 78..1422 33..1377 6725 100 Plus
mRpS5.a 1194 mRpS5.a 66..1194 249..1377 5630 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 24531314..24532441 253..1380 5640 100 Plus
chr3L 24539361 chr3L 24535014..24535939 455..1380 4630 100 Plus
chr3LHet 2555433 chr3LHet 895..1820 455..1380 4615 99.9 Plus
chr3L 24539361 chr3L 24538512..24539361 455..1304 4250 100 Plus
chr3L 24539361 chr3L 24526270..24526520 2..252 1255 100 Plus
chr3L 24539361 chr3L 24520662..24520738 27..103 235 87 Plus
chr3L 24539361 chr3L 24525193..24525268 177..252 185 82.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
CR41597-RA 1011 CR41597-RA 1..842 539..1380 4195 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 24542410..24543537 253..1380 5640 100 Plus
3L 28110227 3L 24546110..24547035 455..1380 4630 100 Plus
3L 28110227 3L 24549608..24550533 455..1380 4630 100 Plus
3L 28110227 3L 24553106..24554031 455..1380 4630 100 Plus
3L 28110227 3L 24537366..24537616 2..252 1255 100 Plus
3L 28110227 3L 24531758..24531834 27..103 235 87 Plus
3L 28110227 3L 24536289..24536364 177..252 185 82.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 24535510..24536637 253..1380 5640 100 Plus
3L 28103327 3L 24546206..24547131 455..1380 4630 100 Plus
3L 28103327 3L 24542708..24543633 455..1380 4630 100 Plus
3L 28103327 3L 24539210..24540135 455..1380 4630 100 Plus
3L 28103327 3L 24530466..24530716 2..252 1255 100 Plus
3L 28103327 3L 24524858..24524934 27..103 235 87 Plus
3L 28103327 3L 24529365..24529464 154..252 190 81 Plus
Blast to na_te.dros performed 2019-03-16 13:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 4401..4483 638..722 123 64 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 91..194 731..838 115 60.2 Plus

RE47909.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:42:21 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 24526269..24526520 1..252 99 -> Plus
chr3L 24531314..24532441 253..1380 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:25 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 1..1224 111..1334 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:33 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 1..1224 111..1334 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:09:40 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RC 1..1224 111..1334 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:06 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 1..1224 111..1334 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:00 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RC 1..1224 111..1334 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:59:12 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
CR41597-RA 1..842 539..1380 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:27:56 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 35..1411 1..1377 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:33 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 35..1411 1..1377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:09:40 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 3..1379 1..1377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:07 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 35..1411 1..1377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:00 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS5-RA 3..1379 1..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:21 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24537365..24537616 1..252 99 -> Plus
3L 24542410..24543537 253..1380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:21 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24537365..24537616 1..252 99 -> Plus
3L 24542410..24543537 253..1380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:21 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24537365..24537616 1..252 99 -> Plus
3L 24542410..24543537 253..1380 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:09:40 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 24530464..24530715 1..252 99 -> Plus
arm_3L 24535510..24536637 253..1380 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:45 Download gff for RE47909.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24530465..24530716 1..252 99 -> Plus
3L 24535510..24536637 253..1380 100   Plus

RE47909.pep Sequence

Translation from 110 to 1333

> RE47909.pep
MSQTLIRRLFNQACSRNIFILNQSLLSSHEPILPGYIGLRNTSFFNKLPA
EDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLN
SPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMKLNPIDRGWSGS
KMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVT
GNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTD
FGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGSTNIQNIAK
AFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLTQNT
QEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQVNVRLH
KLVNAYD*

RE47909.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS5-PA 407 CG40049-PA 1..407 1..407 2130 100 Plus
mRpS5-PC 407 CG40049-PC 1..407 1..407 2130 100 Plus
mRpS5-PD 47 CG40049-PD 1..47 1..47 240 100 Plus

RE47909.hyp Sequence

Translation from 110 to 1333

> RE47909.hyp
MSQTLIRRLFNQACSRNIFILNQSLLSSHEPILPGYIGLRNTSFFNKLPA
EDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLN
SPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMKLNPIDRGWSGS
KMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVT
GNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTD
FGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGSTNIQNIAK
AFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLTQNT
QEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQVNVRLH
KLVNAYD*

RE47909.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS5-PA 407 CG40049-PA 1..407 1..407 2130 100 Plus
mRpS5-PC 407 CG40049-PC 1..407 1..407 2130 100 Plus
mRpS5-PD 47 CG40049-PD 1..47 1..47 240 100 Plus