Clone RE47911 Report

Search the DGRC for RE47911

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:479
Well:11
Vector:pFlc-1
Associated Gene/TranscriptSpt-RB
Protein status:RE47911.pep: gold
Preliminary Size:2077
Sequenced Size:2131

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8247 2001-12-17 Blastp of sequenced clone
CG8247 2002-01-01 Sim4 clustering to Release 2
CG8247 2003-01-01 Sim4 clustering to Release 3
CG8247 2008-04-29 Release 5.5 accounting
CG8247 2008-08-15 Release 5.9 accounting
CG8247 2008-12-18 5.12 accounting

Clone Sequence Records

RE47911.complete Sequence

2131 bp (2131 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071398

> RE47911.complete
GTGCCATCTTGCCATTCACAGGGAACCGAAGCCACTTTTTAAAAAAGTTG
TTTACTTTTACTTCTGCCCACAGAACATTTGAACTCACATTTGCCGGCAA
AAATGGAAATTTTGCGAACGAAACTAGAGGCCTGCCTGCTGATACTGAAC
AGGAACAATGCAGCAGCTGCAAACTGGCTGAATGACCTGTGCGCCGTGCT
ATTGGAATTCGCTACTTTGGCCCACAGCTCCTTCTGCTCCCAGGGGCAGT
CGGAGTGCTCGGAGCTGGTGTGCCTCTGCCTCAGCCAGATTATGATCTGC
ATTCGCCAAGTGGAGAACACCATGAAACTAGAATGCGGCACCACAGTCTC
GGTAAGTCATCAGTACTTCCTGGACCGCATTCGCTGGTGCCTGAAGCGCC
TCATGCATCTTTACAGCGAAGAATCGAGTTCCGAAGCAGTAGCTCCGGAG
CGCTCGTTCCTTAAGCTGGTGGATGGCGCATTGGATTGTTTGGCGCAGTT
CACCTCGCACAGTGAGGAAAACACCGATACCTCCAACTGTCCAAAGACTC
CCAAGGAAGTCCTTCCACTCAGCCAGAAGTTGCGCGCCAACATTGATTTG
ATCTTGGGTCAATCTCTGGGATTCGCCAATGTGGCTTTGTCTCAGGACAA
GAGGGCTCTCAGTGCCTTGTGCCAAAAGGTCATCCGGGAGTGCAATGCCT
TTCAGGAGGAGTGCAAGGAGTCATTCAGTGCCAACTACCTGTCCACCCTT
AAGCTGCGGGCCATGACCATGGAACAGGCAATTTACCAATTGGAGGACTT
TATCAACGATGCGCTTTTGCGCTTGGTATTCACATGCTTCCTGGACTTCG
AGAAGTTTTCGGTAGACAAAATTAGAGCGCTGTTAAGGAACAGCCCAGAT
AATGATGATCTGGCCGATGAGTTCATAGCGGACTTTGATGTGAACATAGA
TCGCGCCACCCAGATAGGCATTTTTGCCATTTCCTTTGCGCCCAACTTGA
AAATGAAAACCATAATGCGCAGCTGTCTGGCCTCCTTTGAATCACTGGAC
ACCACTCTGATACCTTCACTGCAGGCCCATGGTTCCGATTTGCACTCGGA
CATCCTAGAGCAGCACTTTAACGAGGAGGTGGCCAAGTTCAAGGCAGCGC
TTCAGGAGATCATCGACAGCCGCGCCCTCGTTGGTTGTTGCCTGGAGATA
CTGACCTCAGGGATAAGTGCAACGGAAAAGCTTTTCGATAAGCAGCGATT
GGAGGACTTGGTTCAAATCTCTTTGCTGCTAGTCGAGCACTTTCAGCTGG
AAGTCAACCGAAAGGGTCTAAGCGAAACGCAGGACCGATTGGGGGAAGAG
TACTACCAGCAGTTCATCCGGGTACTGCGCGAGTGCAAGGCTATTTTGAT
GTGCGCATCCCAGGTGGAGCCGCAGAGAATCCTCAAGCGCTTCAAGATCT
TGCGCACGATCTTGCGCAAATTGCACGGCTCCCTGGGAGCTGGTAAACAA
GAGGAGGAACTTCCTATTCCCCTGGCTCCCCTTTTAGCTGATGATACCAA
GGGGGTAAATGAAGACGAAACCCATTTCACTGGCTATAAAACAGCCCGAA
GCGGCAGTATCCTCTACGACACAGAACGTAGGAATAGAGTAACTAGACGA
ACGGACAACAAGCTACCCACAAATACCTTGGACATTAAATCGGATAAGGC
AAAACCCCATGGAAATGTTCTGAGAAGAGAAAGTTTACGGACTGTCATGT
TCAAGCGGCAGAATATAGCTGAAAGCAGAAAGCTATACACCTCCATGAGT
AATCAGTCTACGGATCTACAAATCACAGATATACTCGACCAACTCACTGG
AATGTCCAATGGATACTTTGAATGCTGAAGCATTTCAACCATTTGTACAT
AACTTTTTATTTAGTTTAGTGTTTAAGTTCATACCATTTAAGAGATTTTG
CAATTCAAACTTAACGTACGTCGCCACCTGAATGTCATAGGTCAGGTCAG
GCATACACACAAACATGTATGTTCCTCGGGTGGCGAAGAGTATCGCATCG
GAAACAGTTTAGACTGTTGTAAAAGTAGAGCAATAGGTTCCAATAAATAT
ATAGACACATAGCACAAAAAAAAAAAAAAAA

RE47911.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8247-RB 2150 CG8247-RB 1..2116 1..2116 10565 99.9 Plus
CG8248-RA 1473 CG8248-RA 1..199 1918..2116 995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4808335..4809058 1727..1004 3605 99.9 Minus
chr2R 21145070 chr2R 4809502..4809831 680..351 1650 100 Minus
chr2R 21145070 chr2R 4809123..4809449 1003..677 1635 100 Minus
chr2R 21145070 chr2R 4807821..4808109 2115..1827 1445 100 Minus
chr2R 21145070 chr2R 4810119..4810302 184..1 920 100 Minus
chr2R 21145070 chr2R 4809884..4810057 357..184 855 99.4 Minus
chr2R 21145070 chr2R 4808171..4808272 1828..1727 510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8920784..8921507 1727..1004 3605 99.9 Minus
2R 25286936 2R 8921951..8922280 680..351 1650 100 Minus
2R 25286936 2R 8921572..8921898 1003..677 1635 100 Minus
2R 25286936 2R 8920269..8920558 2116..1827 1450 100 Minus
2R 25286936 2R 8922568..8922751 184..1 920 100 Minus
2R 25286936 2R 8922333..8922506 357..184 855 99.4 Minus
2R 25286936 2R 8920620..8920721 1828..1727 510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8921983..8922706 1727..1004 3605 99.8 Minus
2R 25260384 2R 8923150..8923479 680..351 1650 100 Minus
2R 25260384 2R 8922771..8923097 1003..677 1635 100 Minus
2R 25260384 2R 8921468..8921757 2116..1827 1450 100 Minus
2R 25260384 2R 8923767..8923950 184..1 920 100 Minus
2R 25260384 2R 8923532..8923705 357..184 855 99.4 Minus
2R 25260384 2R 8921819..8921920 1828..1727 510 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:10:53 has no hits.

RE47911.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:11:47 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4807821..4808107 1829..2115 100 <- Minus
chr2R 4808171..4808272 1727..1828 100 <- Minus
chr2R 4808336..4809058 1004..1726 99 <- Minus
chr2R 4809123..4809447 679..1003 100 <- Minus
chr2R 4809504..4809830 352..678 100 <- Minus
chr2R 4809890..4810057 184..351 100 <- Minus
chr2R 4810120..4810302 1..183 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:26 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 1..1776 103..1878 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:00:12 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 1..1776 103..1878 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:19:19 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 1..1776 103..1878 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:52 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 1..1776 103..1878 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:57 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-RB 1..1776 103..1878 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:26:04 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 1..2115 1..2115 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:00:12 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 1..2115 1..2115 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:19:19 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 5..2119 1..2115 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:53 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 1..2115 1..2115 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:57 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-RB 5..2119 1..2115 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:47 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8922569..8922751 1..183 100   Minus
2R 8920270..8920556 1829..2115 100 <- Minus
2R 8920620..8920721 1727..1828 100 <- Minus
2R 8920785..8921507 1004..1726 99 <- Minus
2R 8921572..8921896 679..1003 100 <- Minus
2R 8921953..8922279 352..678 100 <- Minus
2R 8922339..8922506 184..351 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:47 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8922569..8922751 1..183 100   Minus
2R 8920270..8920556 1829..2115 100 <- Minus
2R 8920620..8920721 1727..1828 100 <- Minus
2R 8920785..8921507 1004..1726 99 <- Minus
2R 8921572..8921896 679..1003 100 <- Minus
2R 8921953..8922279 352..678 100 <- Minus
2R 8922339..8922506 184..351 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:47 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8922569..8922751 1..183 100   Minus
2R 8920270..8920556 1829..2115 100 <- Minus
2R 8920620..8920721 1727..1828 100 <- Minus
2R 8920785..8921507 1004..1726 99 <- Minus
2R 8921572..8921896 679..1003 100 <- Minus
2R 8921953..8922279 352..678 100 <- Minus
2R 8922339..8922506 184..351 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:19:19 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4807775..4808061 1829..2115 100 <- Minus
arm_2R 4808125..4808226 1727..1828 100 <- Minus
arm_2R 4808290..4809012 1004..1726 99 <- Minus
arm_2R 4809077..4809401 679..1003 100 <- Minus
arm_2R 4809458..4809784 352..678 100 <- Minus
arm_2R 4809844..4810011 184..351 100 <- Minus
arm_2R 4810074..4810256 1..183 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:00:13 Download gff for RE47911.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8921469..8921755 1829..2115 100 <- Minus
2R 8921819..8921920 1727..1828 100 <- Minus
2R 8921984..8922706 1004..1726 99 <- Minus
2R 8922771..8923095 679..1003 100 <- Minus
2R 8923152..8923478 352..678 100 <- Minus
2R 8923538..8923705 184..351 100 <- Minus
2R 8923768..8923950 1..183 100   Minus

RE47911.pep Sequence

Translation from 102 to 1877

> RE47911.pep
MEILRTKLEACLLILNRNNAAAANWLNDLCAVLLEFATLAHSSFCSQGQS
ECSELVCLCLSQIMICIRQVENTMKLECGTTVSVSHQYFLDRIRWCLKRL
MHLYSEESSSEAVAPERSFLKLVDGALDCLAQFTSHSEENTDTSNCPKTP
KEVLPLSQKLRANIDLILGQSLGFANVALSQDKRALSALCQKVIRECNAF
QEECKESFSANYLSTLKLRAMTMEQAIYQLEDFINDALLRLVFTCFLDFE
KFSVDKIRALLRNSPDNDDLADEFIADFDVNIDRATQIGIFAISFAPNLK
MKTIMRSCLASFESLDTTLIPSLQAHGSDLHSDILEQHFNEEVAKFKAAL
QEIIDSRALVGCCLEILTSGISATEKLFDKQRLEDLVQISLLLVEHFQLE
VNRKGLSETQDRLGEEYYQQFIRVLRECKAILMCASQVEPQRILKRFKIL
RTILRKLHGSLGAGKQEEELPIPLAPLLADDTKGVNEDETHFTGYKTARS
GSILYDTERRNRVTRRTDNKLPTNTLDIKSDKAKPHGNVLRRESLRTVMF
KRQNIAESRKLYTSMSNQSTDLQITDILDQLTGMSNGYFEC*

RE47911.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12990-PA 597 GF12990-PA 1..597 1..591 2077 67.2 Plus
Dana\GF19985-PA 527 GF19985-PA 1..470 1..475 758 37.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10607-PA 594 GG10607-PA 1..594 1..591 2804 88.6 Plus
Dere\GG11723-PA 530 GG11723-PA 1..461 1..469 732 36.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22684-PA 564 GH22684-PA 1..556 1..588 1341 49.9 Plus
Dgri\GH19171-PA 538 GH19171-PA 1..473 1..467 778 37.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-PB 591 CG8247-PB 1..591 1..591 3006 100 Plus
Sry-alpha-PB 530 CG17957-PB 1..449 1..457 715 36.6 Plus
Sry-alpha-PA 530 CG17957-PA 1..449 1..457 715 36.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20612-PA 586 GI20612-PA 1..579 1..588 1374 50.7 Plus
Dmoj\GI24207-PA 521 GI24207-PA 24..453 26..457 707 39.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10405-PA 596 GL10405-PA 1..596 1..591 1995 66.4 Plus
Dper\GL14022-PA 551 GL14022-PA 1..468 1..457 683 35.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20927-PA 596 GA20927-PA 1..596 1..591 2018 66.4 Plus
Dpse\Sry-alpha-PA 551 GA14740-PA 1..468 1..457 694 35.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20652-PA 591 GM20652-PA 1..591 1..591 2974 94.9 Plus
Dsec\Sry-alpha-PA 529 GM12854-PA 1..448 1..457 726 37.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10125-PA 591 GD10125-PA 1..591 1..591 2922 94.9 Plus
Dsim\Sry-alpha-PA 530 GD21496-PA 1..449 1..457 732 37 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21052-PA 596 GJ21052-PA 1..589 1..588 1497 53.1 Plus
Dvir\Sry-alpha-PA 537 GJ10776-PA 1..467 1..457 720 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10752-PA 604 GK10752-PA 1..596 1..590 1596 56.2 Plus
Dwil\GK13866-PA 526 GK13866-PA 1..470 1..468 751 39.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22704-PA 593 GE22704-PA 1..593 1..591 2721 86.7 Plus
Dyak\Sry-alpha-PA 530 GE10852-PA 1..461 1..469 745 36.7 Plus

RE47911.hyp Sequence

Translation from 102 to 1877

> RE47911.hyp
MEILRTKLEACLLILNRNNAAAANWLNDLCAVLLEFATLAHSSFCSQGQS
ECSELVCLCLSQIMICIRQVENTMKLECGTTVSVSHQYFLDRIRWCLKRL
MHLYSEESSSEAVAPERSFLKLVDGALDCLAQFTSHSEENTDTSNCPKTP
KEVLPLSQKLRANIDLILGQSLGFANVALSQDKRALSALCQKVIRECNAF
QEECKESFSANYLSTLKLRAMTMEQAIYQLEDFINDALLRLVFTCFLDFE
KFSVDKIRALLRNSPDNDDLADEFIADFDVNIDRATQIGIFAISFAPNLK
MKTIMRSCLASFESLDTTLIPSLQAHGSDLHSDILEQHFNEEVAKFKAAL
QEIIDSRALVGCCLEILTSGISATEKLFDKQRLEDLVQISLLLVEHFQLE
VNRKGLSETQDRLGEEYYQQFIRVLRECKAILMCASQVEPQRILKRFKIL
RTILRKLHGSLGAGKQEEELPIPLAPLLADDTKGVNEDETHFTGYKTARS
GSILYDTERRNRVTRRTDNKLPTNTLDIKSDKAKPHGNVLRRESLRTVMF
KRQNIAESRKLYTSMSNQSTDLQITDILDQLTGMSNGYFEC*

RE47911.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-PB 591 CG8247-PB 1..591 1..591 3006 100 Plus
Sry-alpha-PB 530 CG17957-PB 1..449 1..457 715 36.6 Plus
Sry-alpha-PA 530 CG17957-PA 1..449 1..457 715 36.6 Plus