BDGP Sequence Production Resources |
Search the DGRC for RE47911
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 479 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Spt-RB |
Protein status: | RE47911.pep: gold |
Preliminary Size: | 2077 |
Sequenced Size: | 2131 |
Gene | Date | Evidence |
---|---|---|
CG8247 | 2001-12-17 | Blastp of sequenced clone |
CG8247 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8247 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8247 | 2008-04-29 | Release 5.5 accounting |
CG8247 | 2008-08-15 | Release 5.9 accounting |
CG8247 | 2008-12-18 | 5.12 accounting |
2131 bp (2131 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071398
> RE47911.complete GTGCCATCTTGCCATTCACAGGGAACCGAAGCCACTTTTTAAAAAAGTTG TTTACTTTTACTTCTGCCCACAGAACATTTGAACTCACATTTGCCGGCAA AAATGGAAATTTTGCGAACGAAACTAGAGGCCTGCCTGCTGATACTGAAC AGGAACAATGCAGCAGCTGCAAACTGGCTGAATGACCTGTGCGCCGTGCT ATTGGAATTCGCTACTTTGGCCCACAGCTCCTTCTGCTCCCAGGGGCAGT CGGAGTGCTCGGAGCTGGTGTGCCTCTGCCTCAGCCAGATTATGATCTGC ATTCGCCAAGTGGAGAACACCATGAAACTAGAATGCGGCACCACAGTCTC GGTAAGTCATCAGTACTTCCTGGACCGCATTCGCTGGTGCCTGAAGCGCC TCATGCATCTTTACAGCGAAGAATCGAGTTCCGAAGCAGTAGCTCCGGAG CGCTCGTTCCTTAAGCTGGTGGATGGCGCATTGGATTGTTTGGCGCAGTT CACCTCGCACAGTGAGGAAAACACCGATACCTCCAACTGTCCAAAGACTC CCAAGGAAGTCCTTCCACTCAGCCAGAAGTTGCGCGCCAACATTGATTTG ATCTTGGGTCAATCTCTGGGATTCGCCAATGTGGCTTTGTCTCAGGACAA GAGGGCTCTCAGTGCCTTGTGCCAAAAGGTCATCCGGGAGTGCAATGCCT TTCAGGAGGAGTGCAAGGAGTCATTCAGTGCCAACTACCTGTCCACCCTT AAGCTGCGGGCCATGACCATGGAACAGGCAATTTACCAATTGGAGGACTT TATCAACGATGCGCTTTTGCGCTTGGTATTCACATGCTTCCTGGACTTCG AGAAGTTTTCGGTAGACAAAATTAGAGCGCTGTTAAGGAACAGCCCAGAT AATGATGATCTGGCCGATGAGTTCATAGCGGACTTTGATGTGAACATAGA TCGCGCCACCCAGATAGGCATTTTTGCCATTTCCTTTGCGCCCAACTTGA AAATGAAAACCATAATGCGCAGCTGTCTGGCCTCCTTTGAATCACTGGAC ACCACTCTGATACCTTCACTGCAGGCCCATGGTTCCGATTTGCACTCGGA CATCCTAGAGCAGCACTTTAACGAGGAGGTGGCCAAGTTCAAGGCAGCGC TTCAGGAGATCATCGACAGCCGCGCCCTCGTTGGTTGTTGCCTGGAGATA CTGACCTCAGGGATAAGTGCAACGGAAAAGCTTTTCGATAAGCAGCGATT GGAGGACTTGGTTCAAATCTCTTTGCTGCTAGTCGAGCACTTTCAGCTGG AAGTCAACCGAAAGGGTCTAAGCGAAACGCAGGACCGATTGGGGGAAGAG TACTACCAGCAGTTCATCCGGGTACTGCGCGAGTGCAAGGCTATTTTGAT GTGCGCATCCCAGGTGGAGCCGCAGAGAATCCTCAAGCGCTTCAAGATCT TGCGCACGATCTTGCGCAAATTGCACGGCTCCCTGGGAGCTGGTAAACAA GAGGAGGAACTTCCTATTCCCCTGGCTCCCCTTTTAGCTGATGATACCAA GGGGGTAAATGAAGACGAAACCCATTTCACTGGCTATAAAACAGCCCGAA GCGGCAGTATCCTCTACGACACAGAACGTAGGAATAGAGTAACTAGACGA ACGGACAACAAGCTACCCACAAATACCTTGGACATTAAATCGGATAAGGC AAAACCCCATGGAAATGTTCTGAGAAGAGAAAGTTTACGGACTGTCATGT TCAAGCGGCAGAATATAGCTGAAAGCAGAAAGCTATACACCTCCATGAGT AATCAGTCTACGGATCTACAAATCACAGATATACTCGACCAACTCACTGG AATGTCCAATGGATACTTTGAATGCTGAAGCATTTCAACCATTTGTACAT AACTTTTTATTTAGTTTAGTGTTTAAGTTCATACCATTTAAGAGATTTTG CAATTCAAACTTAACGTACGTCGCCACCTGAATGTCATAGGTCAGGTCAG GCATACACACAAACATGTATGTTCCTCGGGTGGCGAAGAGTATCGCATCG GAAACAGTTTAGACTGTTGTAAAAGTAGAGCAATAGGTTCCAATAAATAT ATAGACACATAGCACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 4808335..4809058 | 1727..1004 | 3605 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 4809502..4809831 | 680..351 | 1650 | 100 | Minus |
chr2R | 21145070 | chr2R | 4809123..4809449 | 1003..677 | 1635 | 100 | Minus |
chr2R | 21145070 | chr2R | 4807821..4808109 | 2115..1827 | 1445 | 100 | Minus |
chr2R | 21145070 | chr2R | 4810119..4810302 | 184..1 | 920 | 100 | Minus |
chr2R | 21145070 | chr2R | 4809884..4810057 | 357..184 | 855 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 4808171..4808272 | 1828..1727 | 510 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 8920784..8921507 | 1727..1004 | 3605 | 99.9 | Minus |
2R | 25286936 | 2R | 8921951..8922280 | 680..351 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 8921572..8921898 | 1003..677 | 1635 | 100 | Minus |
2R | 25286936 | 2R | 8920269..8920558 | 2116..1827 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 8922568..8922751 | 184..1 | 920 | 100 | Minus |
2R | 25286936 | 2R | 8922333..8922506 | 357..184 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 8920620..8920721 | 1828..1727 | 510 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 8921983..8922706 | 1727..1004 | 3605 | 99.8 | Minus |
2R | 25260384 | 2R | 8923150..8923479 | 680..351 | 1650 | 100 | Minus |
2R | 25260384 | 2R | 8922771..8923097 | 1003..677 | 1635 | 100 | Minus |
2R | 25260384 | 2R | 8921468..8921757 | 2116..1827 | 1450 | 100 | Minus |
2R | 25260384 | 2R | 8923767..8923950 | 184..1 | 920 | 100 | Minus |
2R | 25260384 | 2R | 8923532..8923705 | 357..184 | 855 | 99.4 | Minus |
2R | 25260384 | 2R | 8921819..8921920 | 1828..1727 | 510 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 4807821..4808107 | 1829..2115 | 100 | <- | Minus |
chr2R | 4808171..4808272 | 1727..1828 | 100 | <- | Minus |
chr2R | 4808336..4809058 | 1004..1726 | 99 | <- | Minus |
chr2R | 4809123..4809447 | 679..1003 | 100 | <- | Minus |
chr2R | 4809504..4809830 | 352..678 | 100 | <- | Minus |
chr2R | 4809890..4810057 | 184..351 | 100 | <- | Minus |
chr2R | 4810120..4810302 | 1..183 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 1..1776 | 103..1878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 1..1776 | 103..1878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 1..1776 | 103..1878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 1..1776 | 103..1878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-RB | 1..1776 | 103..1878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 1..2115 | 1..2115 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 1..2115 | 1..2115 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 5..2119 | 1..2115 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8247-RB | 1..2115 | 1..2115 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-RB | 5..2119 | 1..2115 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8922569..8922751 | 1..183 | 100 | Minus | |
2R | 8920270..8920556 | 1829..2115 | 100 | <- | Minus |
2R | 8920620..8920721 | 1727..1828 | 100 | <- | Minus |
2R | 8920785..8921507 | 1004..1726 | 99 | <- | Minus |
2R | 8921572..8921896 | 679..1003 | 100 | <- | Minus |
2R | 8921953..8922279 | 352..678 | 100 | <- | Minus |
2R | 8922339..8922506 | 184..351 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8922569..8922751 | 1..183 | 100 | Minus | |
2R | 8920270..8920556 | 1829..2115 | 100 | <- | Minus |
2R | 8920620..8920721 | 1727..1828 | 100 | <- | Minus |
2R | 8920785..8921507 | 1004..1726 | 99 | <- | Minus |
2R | 8921572..8921896 | 679..1003 | 100 | <- | Minus |
2R | 8921953..8922279 | 352..678 | 100 | <- | Minus |
2R | 8922339..8922506 | 184..351 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8922569..8922751 | 1..183 | 100 | Minus | |
2R | 8920270..8920556 | 1829..2115 | 100 | <- | Minus |
2R | 8920620..8920721 | 1727..1828 | 100 | <- | Minus |
2R | 8920785..8921507 | 1004..1726 | 99 | <- | Minus |
2R | 8921572..8921896 | 679..1003 | 100 | <- | Minus |
2R | 8921953..8922279 | 352..678 | 100 | <- | Minus |
2R | 8922339..8922506 | 184..351 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 4807775..4808061 | 1829..2115 | 100 | <- | Minus |
arm_2R | 4808125..4808226 | 1727..1828 | 100 | <- | Minus |
arm_2R | 4808290..4809012 | 1004..1726 | 99 | <- | Minus |
arm_2R | 4809077..4809401 | 679..1003 | 100 | <- | Minus |
arm_2R | 4809458..4809784 | 352..678 | 100 | <- | Minus |
arm_2R | 4809844..4810011 | 184..351 | 100 | <- | Minus |
arm_2R | 4810074..4810256 | 1..183 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8921469..8921755 | 1829..2115 | 100 | <- | Minus |
2R | 8921819..8921920 | 1727..1828 | 100 | <- | Minus |
2R | 8921984..8922706 | 1004..1726 | 99 | <- | Minus |
2R | 8922771..8923095 | 679..1003 | 100 | <- | Minus |
2R | 8923152..8923478 | 352..678 | 100 | <- | Minus |
2R | 8923538..8923705 | 184..351 | 100 | <- | Minus |
2R | 8923768..8923950 | 1..183 | 100 | Minus |
Translation from 102 to 1877
> RE47911.pep MEILRTKLEACLLILNRNNAAAANWLNDLCAVLLEFATLAHSSFCSQGQS ECSELVCLCLSQIMICIRQVENTMKLECGTTVSVSHQYFLDRIRWCLKRL MHLYSEESSSEAVAPERSFLKLVDGALDCLAQFTSHSEENTDTSNCPKTP KEVLPLSQKLRANIDLILGQSLGFANVALSQDKRALSALCQKVIRECNAF QEECKESFSANYLSTLKLRAMTMEQAIYQLEDFINDALLRLVFTCFLDFE KFSVDKIRALLRNSPDNDDLADEFIADFDVNIDRATQIGIFAISFAPNLK MKTIMRSCLASFESLDTTLIPSLQAHGSDLHSDILEQHFNEEVAKFKAAL QEIIDSRALVGCCLEILTSGISATEKLFDKQRLEDLVQISLLLVEHFQLE VNRKGLSETQDRLGEEYYQQFIRVLRECKAILMCASQVEPQRILKRFKIL RTILRKLHGSLGAGKQEEELPIPLAPLLADDTKGVNEDETHFTGYKTARS GSILYDTERRNRVTRRTDNKLPTNTLDIKSDKAKPHGNVLRRESLRTVMF KRQNIAESRKLYTSMSNQSTDLQITDILDQLTGMSNGYFEC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12990-PA | 597 | GF12990-PA | 1..597 | 1..591 | 2077 | 67.2 | Plus |
Dana\GF19985-PA | 527 | GF19985-PA | 1..470 | 1..475 | 758 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10607-PA | 594 | GG10607-PA | 1..594 | 1..591 | 2804 | 88.6 | Plus |
Dere\GG11723-PA | 530 | GG11723-PA | 1..461 | 1..469 | 732 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22684-PA | 564 | GH22684-PA | 1..556 | 1..588 | 1341 | 49.9 | Plus |
Dgri\GH19171-PA | 538 | GH19171-PA | 1..473 | 1..467 | 778 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spt-PB | 591 | CG8247-PB | 1..591 | 1..591 | 3006 | 100 | Plus |
Sry-alpha-PB | 530 | CG17957-PB | 1..449 | 1..457 | 715 | 36.6 | Plus |
Sry-alpha-PA | 530 | CG17957-PA | 1..449 | 1..457 | 715 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20612-PA | 586 | GI20612-PA | 1..579 | 1..588 | 1374 | 50.7 | Plus |
Dmoj\GI24207-PA | 521 | GI24207-PA | 24..453 | 26..457 | 707 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10405-PA | 596 | GL10405-PA | 1..596 | 1..591 | 1995 | 66.4 | Plus |
Dper\GL14022-PA | 551 | GL14022-PA | 1..468 | 1..457 | 683 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20927-PA | 596 | GA20927-PA | 1..596 | 1..591 | 2018 | 66.4 | Plus |
Dpse\Sry-alpha-PA | 551 | GA14740-PA | 1..468 | 1..457 | 694 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20652-PA | 591 | GM20652-PA | 1..591 | 1..591 | 2974 | 94.9 | Plus |
Dsec\Sry-alpha-PA | 529 | GM12854-PA | 1..448 | 1..457 | 726 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10125-PA | 591 | GD10125-PA | 1..591 | 1..591 | 2922 | 94.9 | Plus |
Dsim\Sry-alpha-PA | 530 | GD21496-PA | 1..449 | 1..457 | 732 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21052-PA | 596 | GJ21052-PA | 1..589 | 1..588 | 1497 | 53.1 | Plus |
Dvir\Sry-alpha-PA | 537 | GJ10776-PA | 1..467 | 1..457 | 720 | 36.2 | Plus |
Translation from 102 to 1877
> RE47911.hyp MEILRTKLEACLLILNRNNAAAANWLNDLCAVLLEFATLAHSSFCSQGQS ECSELVCLCLSQIMICIRQVENTMKLECGTTVSVSHQYFLDRIRWCLKRL MHLYSEESSSEAVAPERSFLKLVDGALDCLAQFTSHSEENTDTSNCPKTP KEVLPLSQKLRANIDLILGQSLGFANVALSQDKRALSALCQKVIRECNAF QEECKESFSANYLSTLKLRAMTMEQAIYQLEDFINDALLRLVFTCFLDFE KFSVDKIRALLRNSPDNDDLADEFIADFDVNIDRATQIGIFAISFAPNLK MKTIMRSCLASFESLDTTLIPSLQAHGSDLHSDILEQHFNEEVAKFKAAL QEIIDSRALVGCCLEILTSGISATEKLFDKQRLEDLVQISLLLVEHFQLE VNRKGLSETQDRLGEEYYQQFIRVLRECKAILMCASQVEPQRILKRFKIL RTILRKLHGSLGAGKQEEELPIPLAPLLADDTKGVNEDETHFTGYKTARS GSILYDTERRNRVTRRTDNKLPTNTLDIKSDKAKPHGNVLRRESLRTVMF KRQNIAESRKLYTSMSNQSTDLQITDILDQLTGMSNGYFEC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spt-PB | 591 | CG8247-PB | 1..591 | 1..591 | 3006 | 100 | Plus |
Sry-alpha-PB | 530 | CG17957-PB | 1..449 | 1..457 | 715 | 36.6 | Plus |
Sry-alpha-PA | 530 | CG17957-PA | 1..449 | 1..457 | 715 | 36.6 | Plus |