Clone RE48077 Report

Search the DGRC for RE48077

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:480
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG5059-RA
Protein status:RE48077.pep: gold
Preliminary Size:939
Sequenced Size:1779

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5059 2002-01-01 Sim4 clustering to Release 2
CG5059 2002-05-19 Blastp of sequenced clone
CG5059 2008-04-29 Release 5.5 accounting
CG5059 2008-08-15 Release 5.9 accounting
CG5059 2008-12-18 5.12 accounting

Clone Sequence Records

RE48077.complete Sequence

1779 bp (1779 high quality bases) assembled on 2002-05-19

GenBank Submission: AY119143

> RE48077.complete
ATCTAGTCACACTGGACAGCAACAAAAGATTTAAACTACGCATTAAGCTT
GTGCGTAGAAACGAATCGTGTTTAATTTTAGTTACAAGACAGTCGCTTCG
GGAGAAGCATTAAACAAAGTTGCAATATTTCGGAGCTCCAGCGGTTGGCT
TCAGTCCGAAACCAGTAGTTATAGTCAAATCGAGTGCAGCGGCGGAGAAA
CAGCGCCAAACGAAAAGTAAAACGCATTTTCCTACGCATACATAAACAGC
AAAAGCGAATACACAAACACAGGCAGACATACGGAAGGGCCAAAAAAAAC
TTGGTCAAACTCACGAAAGAATAATAGAAATAGTTTAACTTTAAAGCGAG
TTAATAATAAGCAATAAACCCAAGTTATCTTTGGTGTTGACGTGTTGAAC
ACACATACCGATAAACAAAAACAAAATGTCTACGACACCAAAATCGAGCG
AAGATTTGCTGGGCGAATCTTGGATCGAACTCAGCACAACAGCTGCGATG
GCTGGCATCAAGAGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGG
CGAGGAGTACCTGAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGT
CGAGCCGTGTCGTCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGAT
AGCCCCAAGAGTCCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGA
TGAGCTCAGAAACGTGTACATCAACTACTGGACCAAGGGAGGAGACAAAC
AGAATGCAGGCAATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGT
AGCTGGAACATTGAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAA
AAAGAAGACTAACACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCA
ACTCGTTGTTCTCCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTC
CTGTCCCTGCTGCTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGG
CATACTCCTTACCCGTGTGGTCATTGACTGAAAGATGCCATAAACAAAAA
GGAGAAAGAGGAAATATATATAATCGTTTTCAATCTATCAATATGCACAT
CAATCGAAAACAGAACACGATGCGTTCCATATAAGAAAACGAAGTATACA
CATCTATACAGCCAACCGTATTCCAACTCATTTGTATTTTTATCGGAAGT
CTATATTTTCGACACCTTCTCATTCAGTACATACCTATAAAAATGTAATT
TCTAATTACTAAGCCAGCAAACTAAAACAGGCCTTTGGGCAATGGTTGAA
ACTAAGCGTTTTCATATTTTATATAATTTTATATATTTAACATTATATCA
AGGCAGCAAATCTAATGATACAGAAAAGCATTTATAGATGCTCCATATAT
TTTGCTTTAGCCGTATGTCTTAGCACCCAACCGTGCATTATATCCAATAC
AAATGTACGCCGAACTTCGTGTTAAGAATTTCAATTTCATCATCATACAT
CATATAGAACAACCATAAACATTTGTAGACATATTATAGTTGAATCGTAT
TGTATCCTGATTGTACTTTTTGTTGAACAATCGTCAAATGTTTCGATACA
ATAAGCATATAAGAAAAACGATACAAAAGGAGAAAAAAAAACAATATGGC
ACACATAAGATTATATCTTTAATGTGAGGGAAGGGTTATCCCCCACACAA
AAAAAACAGAATAGTTGTAATGATTTTTTATATTAAAATATTTTTCAATA
TCTATTTAAAAGAGAAAAAAAAAAAAAAA

RE48077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5059-RA 1845 CG5059-RA 1..1764 1..1764 8805 99.9 Plus
CG5059.b 1842 CG5059.b 1..1761 1..1764 8735 99.7 Plus
CG5059-RD 1596 CG5059-RD 217..1515 466..1764 6495 100 Plus
CG5059-RD 1596 CG5059-RD 1..216 1..216 1065 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20503589..20504374 1764..979 3915 99.9 Minus
chr3L 24539361 chr3L 20507958..20508422 465..1 2310 99.8 Minus
chr3L 24539361 chr3L 20504843..20505123 745..465 1375 99.3 Minus
chr3L 24539361 chr3L 20504433..20504616 980..797 920 100 Minus
chr3L 24539361 chr3L 20504715..20504778 799..736 320 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20514599..20515384 1764..979 3930 100 Minus
3L 28110227 3L 20518968..20519432 465..1 2310 99.8 Minus
3L 28110227 3L 20515853..20516133 745..465 1375 99.3 Minus
3L 28110227 3L 20515443..20515626 980..797 920 100 Minus
3L 28110227 3L 20515725..20515788 799..736 320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20507699..20508484 1764..979 3930 100 Minus
3L 28103327 3L 20512068..20512532 465..1 2310 99.7 Minus
3L 28103327 3L 20508953..20509233 745..465 1375 99.2 Minus
3L 28103327 3L 20508543..20508726 980..797 920 100 Minus
3L 28103327 3L 20508825..20508888 799..736 320 100 Minus
Blast to na_te.dros performed 2019-03-16 06:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 1913..1957 1093..1136 114 75.6 Plus

RE48077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:11:30 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20504434..20504613 800..979 100 <- Minus
chr3L 20504715..20504776 738..799 100 <- Minus
chr3L 20504851..20505122 466..737 100 <- Minus
chr3L 20503589..20504373 980..1764 99 <- Minus
chr3L 20507958..20508422 1..465 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:35 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..606 426..1031 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:39:10 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..606 426..1031 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:31:09 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..606 426..1031 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:57 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..606 426..1031 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:12:54 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..606 426..1031 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:12:19 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..1764 1..1764 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:39:10 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..1764 1..1764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:09 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..1725 40..1764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:57 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..1764 1..1764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:12:54 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RA 1..1725 40..1764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:30 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20514599..20515383 980..1764 100 <- Minus
3L 20515444..20515623 800..979 100 <- Minus
3L 20515725..20515786 738..799 100 <- Minus
3L 20515861..20516132 466..737 100 <- Minus
3L 20518968..20519432 1..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:30 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20514599..20515383 980..1764 100 <- Minus
3L 20515444..20515623 800..979 100 <- Minus
3L 20515725..20515786 738..799 100 <- Minus
3L 20515861..20516132 466..737 100 <- Minus
3L 20518968..20519432 1..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:30 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20514599..20515383 980..1764 100 <- Minus
3L 20515444..20515623 800..979 100 <- Minus
3L 20515725..20515786 738..799 100 <- Minus
3L 20515861..20516132 466..737 100 <- Minus
3L 20518968..20519432 1..465 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:09 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20507699..20508483 980..1764 100 <- Minus
arm_3L 20508544..20508723 800..979 100 <- Minus
arm_3L 20508825..20508886 738..799 100 <- Minus
arm_3L 20508961..20509232 466..737 100 <- Minus
arm_3L 20512068..20512532 1..465 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:30 Download gff for RE48077.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20507699..20508483 980..1764 100 <- Minus
3L 20508544..20508723 800..979 100 <- Minus
3L 20508825..20508886 738..799 100 <- Minus
3L 20508961..20509232 466..737 100 <- Minus
3L 20512068..20512532 1..465 99   Minus

RE48077.hyp Sequence

Translation from 425 to 1030

> RE48077.hyp
MSTTPKSSEDLLGESWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLR
EAQRESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYIN
YWTKGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYS
IRLKRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVI
D*

RE48077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5059-PA 201 CG5059-PA 1..201 1..201 1046 100 Plus
CG5059-PB 193 CG5059-PB 6..193 14..201 979 99.5 Plus
CG5059-PE 177 CG5059-PE 1..177 25..201 927 100 Plus
CG5059-PD 177 CG5059-PD 1..177 25..201 927 100 Plus
CG5059-PC 177 CG5059-PC 1..177 25..201 927 100 Plus

RE48077.pep Sequence

Translation from 425 to 1030

> RE48077.pep
MSTTPKSSEDLLGESWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLR
EAQRESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYIN
YWTKGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYS
IRLKRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVI
D*

RE48077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24126-PA 208 GF24126-PA 1..208 1..201 950 90.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13304-PA 206 GG13304-PA 1..206 1..201 955 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17012-PA 203 GH17012-PA 1..203 1..201 882 85.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5059-PA 201 CG5059-PA 1..201 1..201 1046 100 Plus
CG5059-PB 193 CG5059-PB 6..193 14..201 979 99.5 Plus
CG5059-PE 177 CG5059-PE 1..177 25..201 927 100 Plus
CG5059-PD 177 CG5059-PD 1..177 25..201 927 100 Plus
CG5059-PC 177 CG5059-PC 1..177 25..201 927 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11906-PA 203 GI11906-PA 1..203 1..201 856 84.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12771-PA 205 GL12771-PA 1..205 1..201 896 85.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18627-PA 205 GA18627-PA 1..205 1..201 849 85.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22205-PA 206 GM22205-PA 1..206 1..201 979 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12180-PA 206 GD12180-PA 1..206 1..201 979 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13780-PA 202 GJ13780-PA 1..202 1..201 880 85.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12337-PA 209 GK12337-PA 1..209 1..201 871 83.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22394-PA 206 GE22394-PA 1..206 1..201 962 92.7 Plus
Dyak\GE22740-PA 206 GE22740-PA 1..206 1..201 962 92.7 Plus