BDGP Sequence Production Resources |
Search the DGRC for RE48077
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 480 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5059-RA |
Protein status: | RE48077.pep: gold |
Preliminary Size: | 939 |
Sequenced Size: | 1779 |
Gene | Date | Evidence |
---|---|---|
CG5059 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5059 | 2002-05-19 | Blastp of sequenced clone |
CG5059 | 2008-04-29 | Release 5.5 accounting |
CG5059 | 2008-08-15 | Release 5.9 accounting |
CG5059 | 2008-12-18 | 5.12 accounting |
1779 bp (1779 high quality bases) assembled on 2002-05-19
GenBank Submission: AY119143
> RE48077.complete ATCTAGTCACACTGGACAGCAACAAAAGATTTAAACTACGCATTAAGCTT GTGCGTAGAAACGAATCGTGTTTAATTTTAGTTACAAGACAGTCGCTTCG GGAGAAGCATTAAACAAAGTTGCAATATTTCGGAGCTCCAGCGGTTGGCT TCAGTCCGAAACCAGTAGTTATAGTCAAATCGAGTGCAGCGGCGGAGAAA CAGCGCCAAACGAAAAGTAAAACGCATTTTCCTACGCATACATAAACAGC AAAAGCGAATACACAAACACAGGCAGACATACGGAAGGGCCAAAAAAAAC TTGGTCAAACTCACGAAAGAATAATAGAAATAGTTTAACTTTAAAGCGAG TTAATAATAAGCAATAAACCCAAGTTATCTTTGGTGTTGACGTGTTGAAC ACACATACCGATAAACAAAAACAAAATGTCTACGACACCAAAATCGAGCG AAGATTTGCTGGGCGAATCTTGGATCGAACTCAGCACAACAGCTGCGATG GCTGGCATCAAGAGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGG CGAGGAGTACCTGAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGT CGAGCCGTGTCGTCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGAT AGCCCCAAGAGTCCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGA TGAGCTCAGAAACGTGTACATCAACTACTGGACCAAGGGAGGAGACAAAC AGAATGCAGGCAATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGT AGCTGGAACATTGAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAA AAAGAAGACTAACACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCA ACTCGTTGTTCTCCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTC CTGTCCCTGCTGCTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGG CATACTCCTTACCCGTGTGGTCATTGACTGAAAGATGCCATAAACAAAAA GGAGAAAGAGGAAATATATATAATCGTTTTCAATCTATCAATATGCACAT CAATCGAAAACAGAACACGATGCGTTCCATATAAGAAAACGAAGTATACA CATCTATACAGCCAACCGTATTCCAACTCATTTGTATTTTTATCGGAAGT CTATATTTTCGACACCTTCTCATTCAGTACATACCTATAAAAATGTAATT TCTAATTACTAAGCCAGCAAACTAAAACAGGCCTTTGGGCAATGGTTGAA ACTAAGCGTTTTCATATTTTATATAATTTTATATATTTAACATTATATCA AGGCAGCAAATCTAATGATACAGAAAAGCATTTATAGATGCTCCATATAT TTTGCTTTAGCCGTATGTCTTAGCACCCAACCGTGCATTATATCCAATAC AAATGTACGCCGAACTTCGTGTTAAGAATTTCAATTTCATCATCATACAT CATATAGAACAACCATAAACATTTGTAGACATATTATAGTTGAATCGTAT TGTATCCTGATTGTACTTTTTGTTGAACAATCGTCAAATGTTTCGATACA ATAAGCATATAAGAAAAACGATACAAAAGGAGAAAAAAAAACAATATGGC ACACATAAGATTATATCTTTAATGTGAGGGAAGGGTTATCCCCCACACAA AAAAAACAGAATAGTTGTAATGATTTTTTATATTAAAATATTTTTCAATA TCTATTTAAAAGAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-RA | 1845 | CG5059-RA | 1..1764 | 1..1764 | 8805 | 99.9 | Plus |
CG5059.b | 1842 | CG5059.b | 1..1761 | 1..1764 | 8735 | 99.7 | Plus |
CG5059-RD | 1596 | CG5059-RD | 217..1515 | 466..1764 | 6495 | 100 | Plus |
CG5059-RD | 1596 | CG5059-RD | 1..216 | 1..216 | 1065 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20503589..20504374 | 1764..979 | 3915 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 20507958..20508422 | 465..1 | 2310 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 20504843..20505123 | 745..465 | 1375 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 20504433..20504616 | 980..797 | 920 | 100 | Minus |
chr3L | 24539361 | chr3L | 20504715..20504778 | 799..736 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20514599..20515384 | 1764..979 | 3930 | 100 | Minus |
3L | 28110227 | 3L | 20518968..20519432 | 465..1 | 2310 | 99.8 | Minus |
3L | 28110227 | 3L | 20515853..20516133 | 745..465 | 1375 | 99.3 | Minus |
3L | 28110227 | 3L | 20515443..20515626 | 980..797 | 920 | 100 | Minus |
3L | 28110227 | 3L | 20515725..20515788 | 799..736 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20507699..20508484 | 1764..979 | 3930 | 100 | Minus |
3L | 28103327 | 3L | 20512068..20512532 | 465..1 | 2310 | 99.7 | Minus |
3L | 28103327 | 3L | 20508953..20509233 | 745..465 | 1375 | 99.2 | Minus |
3L | 28103327 | 3L | 20508543..20508726 | 980..797 | 920 | 100 | Minus |
3L | 28103327 | 3L | 20508825..20508888 | 799..736 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rooA | 7621 | rooA ROOA_LTR 7621bp | 1913..1957 | 1093..1136 | 114 | 75.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20504434..20504613 | 800..979 | 100 | <- | Minus |
chr3L | 20504715..20504776 | 738..799 | 100 | <- | Minus |
chr3L | 20504851..20505122 | 466..737 | 100 | <- | Minus |
chr3L | 20503589..20504373 | 980..1764 | 99 | <- | Minus |
chr3L | 20507958..20508422 | 1..465 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..606 | 426..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..606 | 426..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..606 | 426..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..606 | 426..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..606 | 426..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..1764 | 1..1764 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..1764 | 1..1764 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..1725 | 40..1764 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..1764 | 1..1764 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RA | 1..1725 | 40..1764 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20514599..20515383 | 980..1764 | 100 | <- | Minus |
3L | 20515444..20515623 | 800..979 | 100 | <- | Minus |
3L | 20515725..20515786 | 738..799 | 100 | <- | Minus |
3L | 20515861..20516132 | 466..737 | 100 | <- | Minus |
3L | 20518968..20519432 | 1..465 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20514599..20515383 | 980..1764 | 100 | <- | Minus |
3L | 20515444..20515623 | 800..979 | 100 | <- | Minus |
3L | 20515725..20515786 | 738..799 | 100 | <- | Minus |
3L | 20515861..20516132 | 466..737 | 100 | <- | Minus |
3L | 20518968..20519432 | 1..465 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20514599..20515383 | 980..1764 | 100 | <- | Minus |
3L | 20515444..20515623 | 800..979 | 100 | <- | Minus |
3L | 20515725..20515786 | 738..799 | 100 | <- | Minus |
3L | 20515861..20516132 | 466..737 | 100 | <- | Minus |
3L | 20518968..20519432 | 1..465 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20507699..20508483 | 980..1764 | 100 | <- | Minus |
arm_3L | 20508544..20508723 | 800..979 | 100 | <- | Minus |
arm_3L | 20508825..20508886 | 738..799 | 100 | <- | Minus |
arm_3L | 20508961..20509232 | 466..737 | 100 | <- | Minus |
arm_3L | 20512068..20512532 | 1..465 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20507699..20508483 | 980..1764 | 100 | <- | Minus |
3L | 20508544..20508723 | 800..979 | 100 | <- | Minus |
3L | 20508825..20508886 | 738..799 | 100 | <- | Minus |
3L | 20508961..20509232 | 466..737 | 100 | <- | Minus |
3L | 20512068..20512532 | 1..465 | 99 | Minus |
Translation from 425 to 1030
> RE48077.hyp MSTTPKSSEDLLGESWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLR EAQRESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYIN YWTKGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYS IRLKRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVI D*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-PA | 201 | CG5059-PA | 1..201 | 1..201 | 1046 | 100 | Plus |
CG5059-PB | 193 | CG5059-PB | 6..193 | 14..201 | 979 | 99.5 | Plus |
CG5059-PE | 177 | CG5059-PE | 1..177 | 25..201 | 927 | 100 | Plus |
CG5059-PD | 177 | CG5059-PD | 1..177 | 25..201 | 927 | 100 | Plus |
CG5059-PC | 177 | CG5059-PC | 1..177 | 25..201 | 927 | 100 | Plus |
Translation from 425 to 1030
> RE48077.pep MSTTPKSSEDLLGESWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLR EAQRESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYIN YWTKGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYS IRLKRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVI D*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24126-PA | 208 | GF24126-PA | 1..208 | 1..201 | 950 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13304-PA | 206 | GG13304-PA | 1..206 | 1..201 | 955 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17012-PA | 203 | GH17012-PA | 1..203 | 1..201 | 882 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-PA | 201 | CG5059-PA | 1..201 | 1..201 | 1046 | 100 | Plus |
CG5059-PB | 193 | CG5059-PB | 6..193 | 14..201 | 979 | 99.5 | Plus |
CG5059-PE | 177 | CG5059-PE | 1..177 | 25..201 | 927 | 100 | Plus |
CG5059-PD | 177 | CG5059-PD | 1..177 | 25..201 | 927 | 100 | Plus |
CG5059-PC | 177 | CG5059-PC | 1..177 | 25..201 | 927 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11906-PA | 203 | GI11906-PA | 1..203 | 1..201 | 856 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12771-PA | 205 | GL12771-PA | 1..205 | 1..201 | 896 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18627-PA | 205 | GA18627-PA | 1..205 | 1..201 | 849 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22205-PA | 206 | GM22205-PA | 1..206 | 1..201 | 979 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12180-PA | 206 | GD12180-PA | 1..206 | 1..201 | 979 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13780-PA | 202 | GJ13780-PA | 1..202 | 1..201 | 880 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12337-PA | 209 | GK12337-PA | 1..209 | 1..201 | 871 | 83.7 | Plus |