BDGP Sequence Production Resources |
Search the DGRC for RE48233
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 482 |
Well: | 33 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG32364-RA |
Protein status: | RE48233.pep: gold |
Sequenced Size: | 1061 |
Gene | Date | Evidence |
---|---|---|
CG32364-RA | 2011-07-21 | Manual selection by Ken Wan |
1061 bp assembled on 2011-09-14
GenBank Submission: BT128889.1
> RE48233.complete ATCTTAGCTTTTTTTTTTTTTTTTGATGCACGCGTGTATGCTGTGTATTT TTTTTTTTTTGCTATTTTTAAAATGGATTTCGAGAGCAAATACTGCACCA GTCAAGTAAATGGCACTATTACCATAACTACGCGCAAAGTCCTTGATGAA AATCTAAAATCCTTACTGGATGAGGGAAAGGGCGAGCTGTTTCTCTCGTG TATACCGAGGAATCACAGTTGTTCTCCGCGGTGGATTGTGGAAGTGGCCA GCGAACTGGGTGAAGTTTACATTATGCGCTATAAGATTGATTTTTCGGGA AATTCTCGCGGCTACGCCTACTTGCAATATATCAATGTGGACCTCAAGGA ATCGGCAATGCAATATCTGCCAATGCGATTCCGACAGCTTTGCATGTGCT TAAGGGTGGAGCCATCGACCAACAATCGCGAGCTGGTGCTCAAAAACGTA GAATCGTCGCTTAGACCATGGCAAGTGTACCAGGAGATGTTGAAGATACA TCCCTTTACCATCGTTCGAGTCTACGAGTATCAATTAGACCAGTTCTTCT ATATATTTGAGTACCGCAACAACGACTCGGCCGCAAGTGCCCATCAGAGA GTAAGGAATTCGATCAGAAAATTCGGTGAGCATGCGCACATCTCCTGGTT GACTGCGGAGAACATCTTGAGCAGAGCCAGCGGTAGCTTCTGTTTTCAAC GGGAAGTAAGCCAAAATCGTACTCGACGCGTTCCTCCCAGACAAAAGGGC TGTTTCAAGTTTTAAATGGAAGTGGTATCAAGTATGTTACTTTATTGGTT CATGCTACCAAATCCATAAGGCTCCAAATGTTTTGTTTGTACTACACGTA AGTAGGACGAAAATGTATAAAATACTTTAATACTTTAGTTATATTTTTTC TATTGTTAAATAAGTTTATAAGTAAAATAAGAGTACTCTTAAATAAGTCA ACCATTTAGATATGAATGAAGATGTTTATTGCTTGATTTGTGTAAGTTTT TGTAATACGTGGAATTTGAAAACAAGAATATGTGTTTTGCAAAGTAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8201532..8202213 | 1045..366 | 3330 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 8202269..8202449 | 365..185 | 905 | 100 | Minus |
chr3L | 24539361 | chr3L | 8202514..8202702 | 186..1 | 850 | 97.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2246..2396 | 1027..864 | 167 | 62.4 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 110..244 | 946..811 | 119 | 58.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8201532..8202213 | 366..1045 | 99 | <- | Minus |
chr3L | 8202269..8202447 | 187..365 | 100 | <- | Minus |
chr3L | 8202514..8202678 | 25..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32364-RA | 1..693 | 73..765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32364-RA | 1..693 | 73..765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32364-RA | 1..693 | 73..765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32364-RA | 1..973 | 73..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32364-RA | 25..1045 | 25..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32364-RA | 25..1045 | 25..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8209578..8210257 | 366..1045 | 100 | <- | Minus |
3L | 8210313..8210491 | 187..365 | 100 | <- | Minus |
3L | 8210558..8210719 | 25..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8209578..8210257 | 366..1045 | 100 | <- | Minus |
3L | 8210313..8210491 | 187..365 | 100 | <- | Minus |
3L | 8210558..8210719 | 25..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8209578..8210257 | 366..1045 | 100 | <- | Minus |
3L | 8210313..8210491 | 187..365 | 100 | <- | Minus |
3L | 8210558..8210719 | 25..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8202678..8203357 | 366..1045 | 100 | <- | Minus |
arm_3L | 8203413..8203591 | 187..365 | 100 | <- | Minus |
arm_3L | 8203658..8203819 | 25..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8202678..8203357 | 366..1045 | 100 | <- | Minus |
3L | 8203413..8203591 | 187..365 | 100 | <- | Minus |
3L | 8203658..8203819 | 25..186 | 100 | Minus |
Translation from 0 to 764
> RE48233.pep ILAFFFFFDARVYAVYFFFFAIFKMDFESKYCTSQVNGTITITTRKVLDE NLKSLLDEGKGELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKIDFSG NSRGYAYLQYINVDLKESAMQYLPMRFRQLCMCLRVEPSTNNRELVLKNV ESSLRPWQVYQEMLKIHPFTIVRVYEYQLDQFFYIFEYRNNDSAASAHQR VRNSIRKFGEHAHISWLTAENILSRASGSFCFQREVSQNRTRRVPPRQKG CFKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24698-PA | 229 | GF24698-PA | 1..229 | 25..254 | 485 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15101-PA | 251 | GG15101-PA | 29..251 | 24..254 | 891 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15979-PA | 231 | GH15979-PA | 5..195 | 27..220 | 320 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tut-PA | 230 | CG32364-PA | 1..230 | 25..254 | 1216 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16630-PA | 230 | GI16630-PA | 4..210 | 26..233 | 371 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22560-PA | 282 | GL22560-PA | 1..225 | 25..251 | 419 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16847-PA | 308 | GA16847-PA | 1..225 | 25..251 | 417 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24958-PA | 55 | GM24958-PA | 1..51 | 25..75 | 228 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17590-PA | 230 | GD17590-PA | 1..230 | 25..254 | 1030 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12885-PA | 238 | GJ12885-PA | 1..200 | 25..225 | 407 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17182-PA | 240 | GK17182-PA | 1..190 | 25..217 | 342 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21325-PA | 224 | GE21325-PA | 1..224 | 25..254 | 876 | 69.1 | Plus |
Translation from 25 to 764
> RE48233.hyp DARVYAVYFFFFAIFKMDFESKYCTSQVNGTITITTRKVLDENLKSLLDE GKGELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKIDFSGNSRGYAYL QYINVDLKESAMQYLPMRFRQLCMCLRVEPSTNNRELVLKNVESSLRPWQ VYQEMLKIHPFTIVRVYEYQLDQFFYIFEYRNNDSAASAHQRVRNSIRKF GEHAHISWLTAENILSRASGSFCFQREVSQNRTRRVPPRQKGCFKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32364-PA | 230 | CG32364-PA | 1..230 | 17..246 | 1216 | 100 | Plus |