Clone RE48233 Report

Search the DGRC for RE48233

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:482
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG32364-RA
Protein status:RE48233.pep: gold
Sequenced Size:1061

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32364-RA 2011-07-21 Manual selection by Ken Wan

Clone Sequence Records

RE48233.complete Sequence

1061 bp assembled on 2011-09-14

GenBank Submission: BT128889.1

> RE48233.complete
ATCTTAGCTTTTTTTTTTTTTTTTGATGCACGCGTGTATGCTGTGTATTT
TTTTTTTTTTGCTATTTTTAAAATGGATTTCGAGAGCAAATACTGCACCA
GTCAAGTAAATGGCACTATTACCATAACTACGCGCAAAGTCCTTGATGAA
AATCTAAAATCCTTACTGGATGAGGGAAAGGGCGAGCTGTTTCTCTCGTG
TATACCGAGGAATCACAGTTGTTCTCCGCGGTGGATTGTGGAAGTGGCCA
GCGAACTGGGTGAAGTTTACATTATGCGCTATAAGATTGATTTTTCGGGA
AATTCTCGCGGCTACGCCTACTTGCAATATATCAATGTGGACCTCAAGGA
ATCGGCAATGCAATATCTGCCAATGCGATTCCGACAGCTTTGCATGTGCT
TAAGGGTGGAGCCATCGACCAACAATCGCGAGCTGGTGCTCAAAAACGTA
GAATCGTCGCTTAGACCATGGCAAGTGTACCAGGAGATGTTGAAGATACA
TCCCTTTACCATCGTTCGAGTCTACGAGTATCAATTAGACCAGTTCTTCT
ATATATTTGAGTACCGCAACAACGACTCGGCCGCAAGTGCCCATCAGAGA
GTAAGGAATTCGATCAGAAAATTCGGTGAGCATGCGCACATCTCCTGGTT
GACTGCGGAGAACATCTTGAGCAGAGCCAGCGGTAGCTTCTGTTTTCAAC
GGGAAGTAAGCCAAAATCGTACTCGACGCGTTCCTCCCAGACAAAAGGGC
TGTTTCAAGTTTTAAATGGAAGTGGTATCAAGTATGTTACTTTATTGGTT
CATGCTACCAAATCCATAAGGCTCCAAATGTTTTGTTTGTACTACACGTA
AGTAGGACGAAAATGTATAAAATACTTTAATACTTTAGTTATATTTTTTC
TATTGTTAAATAAGTTTATAAGTAAAATAAGAGTACTCTTAAATAAGTCA
ACCATTTAGATATGAATGAAGATGTTTATTGCTTGATTTGTGTAAGTTTT
TGTAATACGTGGAATTTGAAAACAAGAATATGTGTTTTGCAAAGTAAAAA
AAAAAAAAAAA

RE48233.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8201532..8202213 1045..366 3330 99.6 Minus
chr3L 24539361 chr3L 8202269..8202449 365..185 905 100 Minus
chr3L 24539361 chr3L 8202514..8202702 186..1 850 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8209578..8210257 1045..366 3400 100 Minus
3L 28110227 3L 8210558..8210743 186..1 930 100 Minus
3L 28110227 3L 8210313..8210493 365..185 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8202678..8203357 1045..366 3400 100 Minus
3L 28103327 3L 8203658..8203843 186..1 930 100 Minus
3L 28103327 3L 8203413..8203593 365..185 905 100 Minus
Blast to na_te.dros performed 2019-03-15 11:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2246..2396 1027..864 167 62.4 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 110..244 946..811 119 58.3 Minus

RE48233.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:02:26 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8201532..8202213 366..1045 99 <- Minus
chr3L 8202269..8202447 187..365 100 <- Minus
chr3L 8202514..8202678 25..186 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-14 17:43:42 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
CG32364-RA 1..693 73..765 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:33:34 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
CG32364-RA 1..693 73..765 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:19:46 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
CG32364-RA 1..693 73..765 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 17:43:41 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
CG32364-RA 1..973 73..1045 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:33:34 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
CG32364-RA 25..1045 25..1045 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:46 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
CG32364-RA 25..1045 25..1045 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:26 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8209578..8210257 366..1045 100 <- Minus
3L 8210313..8210491 187..365 100 <- Minus
3L 8210558..8210719 25..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:26 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8209578..8210257 366..1045 100 <- Minus
3L 8210313..8210491 187..365 100 <- Minus
3L 8210558..8210719 25..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:26 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8209578..8210257 366..1045 100 <- Minus
3L 8210313..8210491 187..365 100 <- Minus
3L 8210558..8210719 25..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:33:34 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8202678..8203357 366..1045 100 <- Minus
arm_3L 8203413..8203591 187..365 100 <- Minus
arm_3L 8203658..8203819 25..186 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:48:28 Download gff for RE48233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8202678..8203357 366..1045 100 <- Minus
3L 8203413..8203591 187..365 100 <- Minus
3L 8203658..8203819 25..186 100   Minus

RE48233.pep Sequence

Translation from 0 to 764

> RE48233.pep
ILAFFFFFDARVYAVYFFFFAIFKMDFESKYCTSQVNGTITITTRKVLDE
NLKSLLDEGKGELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKIDFSG
NSRGYAYLQYINVDLKESAMQYLPMRFRQLCMCLRVEPSTNNRELVLKNV
ESSLRPWQVYQEMLKIHPFTIVRVYEYQLDQFFYIFEYRNNDSAASAHQR
VRNSIRKFGEHAHISWLTAENILSRASGSFCFQREVSQNRTRRVPPRQKG
CFKF*

RE48233.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24698-PA 229 GF24698-PA 1..229 25..254 485 45.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15101-PA 251 GG15101-PA 29..251 24..254 891 71 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15979-PA 231 GH15979-PA 5..195 27..220 320 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
tut-PA 230 CG32364-PA 1..230 25..254 1216 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16630-PA 230 GI16630-PA 4..210 26..233 371 41.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22560-PA 282 GL22560-PA 1..225 25..251 419 40.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16847-PA 308 GA16847-PA 1..225 25..251 417 40.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24958-PA 55 GM24958-PA 1..51 25..75 228 80.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17590-PA 230 GD17590-PA 1..230 25..254 1030 81.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12885-PA 238 GJ12885-PA 1..200 25..225 407 45.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17182-PA 240 GK17182-PA 1..190 25..217 342 41.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21325-PA 224 GE21325-PA 1..224 25..254 876 69.1 Plus

RE48233.hyp Sequence

Translation from 25 to 764

> RE48233.hyp
DARVYAVYFFFFAIFKMDFESKYCTSQVNGTITITTRKVLDENLKSLLDE
GKGELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKIDFSGNSRGYAYL
QYINVDLKESAMQYLPMRFRQLCMCLRVEPSTNNRELVLKNVESSLRPWQ
VYQEMLKIHPFTIVRVYEYQLDQFFYIFEYRNNDSAASAHQRVRNSIRKF
GEHAHISWLTAENILSRASGSFCFQREVSQNRTRRVPPRQKGCFKF*

RE48233.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32364-PA 230 CG32364-PA 1..230 17..246 1216 100 Plus