Clone RE48339 Report

Search the DGRC for RE48339

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:483
Well:39
Vector:pFlc-1
Associated Gene/Transcripthgo-RA
Protein status:RE48339.pep: gold
Preliminary Size:1272
Sequenced Size:1461

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4779 2002-01-01 Sim4 clustering to Release 2
CG4779 2003-01-01 Sim4 clustering to Release 3
CG4779 2003-01-30 Blastp of sequenced clone
hgo 2008-04-29 Release 5.5 accounting
hgo 2008-08-15 Release 5.9 accounting
hgo 2008-12-18 5.12 accounting

Clone Sequence Records

RE48339.complete Sequence

1461 bp (1461 high quality bases) assembled on 2003-01-30

GenBank Submission: BT003496

> RE48339.complete
AAATTTCAGTGCTTCTATAAACCGCCGGAGGAACAGACATGTCGGAATAC
AAGTACCTCTCGGGTTTTGGGTCTCACTTCTCATCTGAGGATGAGCGGTA
TCCCAACTCCTTGCCAGTGGGACAGAACTCACCTCAAGTGTGCCCATACA
AACTCTATGCGGAGCAGCTATCCGGAAGTGCCTTCACTGCGCCCAGGACG
GAGAATATGCGCACGTGGCTCTACAGGAAGTTGCCCTCTGCCGCGCACCT
TCCATTCCAGCCCTTCAAGGGAGCTGAGTACTTTAGTCAAAACTGGGATG
AGCAGCCACCGAATCCAAACCAGCTTCGTTGGAAACCCTTTGACTTGCCT
CCAAAGGATGGAAAAAATGTGAACTTTGTGGAAGGCTTGCACACGGTTTG
TGGAGCGGGAGATCCCAGATCTCGTCATGGTCTTGCCATACACATTTACT
CCTGCAATGGCTCGATGGATAACTCAGCTTTCTATAACAGCGATGGTGAT
TTTTTGATTGTGCCCCAGCAAGGAGTCTTAGATATAACCACAGAGTTTGG
AAGGATGTCTGTAGCCCCAAATGAGATCTGCGTTATACCACAGGGAATAC
GATTTGCTGTAAATGTGGATTCTCCTTCTAGGGGTTATATCCTGGAGGTC
TATGATGATCACTTCGTTTTGCCGGACTTGGGTCCCATTGGTGCTAATGG
TTTGGCCAATCCCAGAGATTTCGAGACTCCTGTGGCGTGGTTCGATGATC
GGGATGTAAAGGACTTCCAGGTAATTTCGAAATTCCAAGGTCGCCTCTTC
GTGGCCAAGCAAAATCACACCGTCTTCGATGTGGTGGCTTGGCATGGTAA
CTATGTGCCCTTCAAGTACGATCTGTCCAAGTTCATGGTGATTAACTCGG
TTAGCTTTGACCATTGTGACCCCAGCATTTTTACCGTGCTCACTTGTCCC
AGCTTACGAGCTGGAACGGCCATAGCAGACTTTGTGATCTTTCCACCCCG
TTGGTCAGTGCAGGAGCACACCTTCAGGCCACCCTATTACCACAGGAACT
GCATGAGCGAGTTCATGGGCCTAATTCTGGGCAAGTATGAGGCCAAGGAG
GATGGCTTTGCGGCAGGAGGAGCGACCCTCCATTCCATGATGACGCCACA
TGGTCCAGATGTCAAGTGCTTTGAAGGTGCCTCGAATGCCAAACTGGTGC
CGGAACGCGTGGCCGAGGGAACTCAGGCCTTCATGTTCGAATCCTCTCTA
AGTTTGGCCGTTACCAAGTGGGGCGAGGAGACCTGCCAAAAACTGGATGC
CGCATATTACGAATGCTGGCAGGCGCTGAAGAACAACTTTCAAATAACTA
AAAATTAGCATATTTAACTGAAGCAAAACACGTTATGATAAAATTACAAT
TAATTTTATTAGTAAATGTTGTTATTTGGGAAAAATCCATTCGCCAAAAA
AAAAAAAAAAA

RE48339.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-RA 1593 hgo-RA 91..1538 1..1448 7225 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11136517..11136804 758..1045 1425 99.7 Plus
chr2L 23010047 chr2L 11135559..11135830 52..323 1360 100 Plus
chr2L 23010047 chr2L 11137102..11137320 1225..1443 1095 100 Plus
chr2L 23010047 chr2L 11135897..11136085 322..510 945 100 Plus
chr2L 23010047 chr2L 11136859..11137041 1045..1227 915 100 Plus
chr2L 23010047 chr2L 11136323..11136456 629..762 670 100 Plus
chr2L 23010047 chr2L 11136150..11136272 510..632 615 100 Plus
chr2L 23010047 chr2L 11135150..11135202 1..53 265 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11137762..11138049 758..1045 1425 99.7 Plus
2L 23513712 2L 11136804..11137075 52..323 1360 100 Plus
2L 23513712 2L 11138347..11138570 1225..1448 1105 99.6 Plus
2L 23513712 2L 11137142..11137330 322..510 945 100 Plus
2L 23513712 2L 11138104..11138286 1045..1227 915 100 Plus
2L 23513712 2L 11137568..11137701 629..762 670 100 Plus
2L 23513712 2L 11137395..11137517 510..632 615 100 Plus
2L 23513712 2L 11136395..11136447 1..53 265 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11137762..11138049 758..1045 1425 99.6 Plus
2L 23513712 2L 11136804..11137075 52..323 1360 100 Plus
2L 23513712 2L 11138347..11138570 1225..1448 1105 99.5 Plus
2L 23513712 2L 11137142..11137330 322..510 945 100 Plus
2L 23513712 2L 11138104..11138286 1045..1227 915 100 Plus
2L 23513712 2L 11137568..11137701 629..762 670 100 Plus
2L 23513712 2L 11137395..11137517 510..632 615 100 Plus
2L 23513712 2L 11136395..11136447 1..53 265 100 Plus
Blast to na_te.dros performed 2019-03-16 23:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 5..90 1329..1416 138 65.2 Plus
roo 9092 roo DM_ROO 9092bp 7946..7976 499..530 112 87.5 Plus

RE48339.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:11:55 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11135150..11135202 1..53 100 -> Plus
chr2L 11135561..11135830 54..323 100 -> Plus
chr2L 11135899..11136085 324..510 100 -> Plus
chr2L 11136151..11136271 511..631 100 -> Plus
chr2L 11136326..11136456 632..762 100 -> Plus
chr2L 11136522..11136803 763..1044 100 -> Plus
chr2L 11136859..11137040 1045..1226 100 -> Plus
chr2L 11137104..11137322 1227..1445 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:40 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1320 39..1358 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:40 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1320 39..1358 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:19:21 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1320 39..1358 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:44 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1320 39..1358 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:00 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1320 39..1358 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:08:11 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1445 1..1445 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:40 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1445 1..1445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:19:21 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 3..1445 1..1443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:45 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 1..1445 1..1445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:00 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 3..1445 1..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:55 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11137144..11137330 324..510 100 -> Plus
2L 11137396..11137516 511..631 100 -> Plus
2L 11137571..11137701 632..762 100 -> Plus
2L 11136395..11136447 1..53 100 -> Plus
2L 11136806..11137075 54..323 100 -> Plus
2L 11137767..11138048 763..1044 100 -> Plus
2L 11138104..11138285 1045..1226 100 -> Plus
2L 11138349..11138567 1227..1445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:55 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11137144..11137330 324..510 100 -> Plus
2L 11137396..11137516 511..631 100 -> Plus
2L 11137571..11137701 632..762 100 -> Plus
2L 11136395..11136447 1..53 100 -> Plus
2L 11136806..11137075 54..323 100 -> Plus
2L 11137767..11138048 763..1044 100 -> Plus
2L 11138104..11138285 1045..1226 100 -> Plus
2L 11138349..11138567 1227..1445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:55 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11137144..11137330 324..510 100 -> Plus
2L 11137396..11137516 511..631 100 -> Plus
2L 11137571..11137701 632..762 100 -> Plus
2L 11136395..11136447 1..53 100 -> Plus
2L 11136806..11137075 54..323 100 -> Plus
2L 11137767..11138048 763..1044 100 -> Plus
2L 11138104..11138285 1045..1226 100 -> Plus
2L 11138349..11138567 1227..1445 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:19:21 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11136395..11136447 1..53 100 -> Plus
arm_2L 11136806..11137075 54..323 100 -> Plus
arm_2L 11137144..11137330 324..510 100 -> Plus
arm_2L 11137396..11137516 511..631 100 -> Plus
arm_2L 11137571..11137701 632..762 100 -> Plus
arm_2L 11137767..11138048 763..1044 100 -> Plus
arm_2L 11138104..11138285 1045..1226 100 -> Plus
arm_2L 11138349..11138567 1227..1445 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:39 Download gff for RE48339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11137767..11138048 763..1044 100 -> Plus
2L 11138104..11138285 1045..1226 100 -> Plus
2L 11137571..11137701 632..762 100 -> Plus
2L 11136806..11137075 54..323 100 -> Plus
2L 11137144..11137330 324..510 100 -> Plus
2L 11137396..11137516 511..631 100 -> Plus
2L 11138349..11138567 1227..1445 99   Plus
2L 11136395..11136447 1..53 100 -> Plus

RE48339.pep Sequence

Translation from 38 to 1357

> RE48339.pep
MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFT
APRTENMRTWLYRKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKP
FDLPPKDGKNVNFVEGLHTVCGAGDPRSRHGLAIHIYSCNGSMDNSAFYN
SDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDSPSRGY
ILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQ
GRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTV
LTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKY
EAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPERVAEGTQAFMF
ESSLSLAVTKWGEETCQKLDAAYYECWQALKNNFQITKN*

RE48339.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14763-PA 438 GF14763-PA 1..438 1..439 2209 90.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23710-PA 439 GG23710-PA 1..439 1..439 2292 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10766-PA 439 GH10766-PA 4..437 3..436 2059 85.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-PA 439 CG4779-PA 1..439 1..439 2398 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20619-PA 438 GI20619-PA 1..436 1..436 2020 83 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19546-PA 441 GL19546-PA 1..438 1..438 2068 85.8 Plus
Dper\GL12860-PA 71 GL12860-PA 6..68 376..438 322 88.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18425-PA 441 GA18425-PA 1..438 1..438 2199 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18940-PA 439 GM18940-PA 1..439 1..439 2337 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23768-PA 439 GD23768-PA 1..439 1..439 2346 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13212-PA 438 GJ13212-PA 1..436 1..436 2081 86.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14896-PA 437 GK14896-PA 1..436 1..436 2129 88.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18517-PA 439 GE18517-PA 1..439 1..439 2306 96.4 Plus

RE48339.hyp Sequence

Translation from 38 to 1357

> RE48339.hyp
MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFT
APRTENMRTWLYRKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKP
FDLPPKDGKNVNFVEGLHTVCGAGDPRSRHGLAIHIYSCNGSMDNSAFYN
SDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDSPSRGY
ILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQ
GRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTV
LTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKY
EAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPERVAEGTQAFMF
ESSLSLAVTKWGEETCQKLDAAYYECWQALKNNFQITKN*

RE48339.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-PA 439 CG4779-PA 1..439 1..439 2398 100 Plus