BDGP Sequence Production Resources |
Search the DGRC for RE48339
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 483 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | hgo-RA |
Protein status: | RE48339.pep: gold |
Preliminary Size: | 1272 |
Sequenced Size: | 1461 |
Gene | Date | Evidence |
---|---|---|
CG4779 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4779 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4779 | 2003-01-30 | Blastp of sequenced clone |
hgo | 2008-04-29 | Release 5.5 accounting |
hgo | 2008-08-15 | Release 5.9 accounting |
hgo | 2008-12-18 | 5.12 accounting |
1461 bp (1461 high quality bases) assembled on 2003-01-30
GenBank Submission: BT003496
> RE48339.complete AAATTTCAGTGCTTCTATAAACCGCCGGAGGAACAGACATGTCGGAATAC AAGTACCTCTCGGGTTTTGGGTCTCACTTCTCATCTGAGGATGAGCGGTA TCCCAACTCCTTGCCAGTGGGACAGAACTCACCTCAAGTGTGCCCATACA AACTCTATGCGGAGCAGCTATCCGGAAGTGCCTTCACTGCGCCCAGGACG GAGAATATGCGCACGTGGCTCTACAGGAAGTTGCCCTCTGCCGCGCACCT TCCATTCCAGCCCTTCAAGGGAGCTGAGTACTTTAGTCAAAACTGGGATG AGCAGCCACCGAATCCAAACCAGCTTCGTTGGAAACCCTTTGACTTGCCT CCAAAGGATGGAAAAAATGTGAACTTTGTGGAAGGCTTGCACACGGTTTG TGGAGCGGGAGATCCCAGATCTCGTCATGGTCTTGCCATACACATTTACT CCTGCAATGGCTCGATGGATAACTCAGCTTTCTATAACAGCGATGGTGAT TTTTTGATTGTGCCCCAGCAAGGAGTCTTAGATATAACCACAGAGTTTGG AAGGATGTCTGTAGCCCCAAATGAGATCTGCGTTATACCACAGGGAATAC GATTTGCTGTAAATGTGGATTCTCCTTCTAGGGGTTATATCCTGGAGGTC TATGATGATCACTTCGTTTTGCCGGACTTGGGTCCCATTGGTGCTAATGG TTTGGCCAATCCCAGAGATTTCGAGACTCCTGTGGCGTGGTTCGATGATC GGGATGTAAAGGACTTCCAGGTAATTTCGAAATTCCAAGGTCGCCTCTTC GTGGCCAAGCAAAATCACACCGTCTTCGATGTGGTGGCTTGGCATGGTAA CTATGTGCCCTTCAAGTACGATCTGTCCAAGTTCATGGTGATTAACTCGG TTAGCTTTGACCATTGTGACCCCAGCATTTTTACCGTGCTCACTTGTCCC AGCTTACGAGCTGGAACGGCCATAGCAGACTTTGTGATCTTTCCACCCCG TTGGTCAGTGCAGGAGCACACCTTCAGGCCACCCTATTACCACAGGAACT GCATGAGCGAGTTCATGGGCCTAATTCTGGGCAAGTATGAGGCCAAGGAG GATGGCTTTGCGGCAGGAGGAGCGACCCTCCATTCCATGATGACGCCACA TGGTCCAGATGTCAAGTGCTTTGAAGGTGCCTCGAATGCCAAACTGGTGC CGGAACGCGTGGCCGAGGGAACTCAGGCCTTCATGTTCGAATCCTCTCTA AGTTTGGCCGTTACCAAGTGGGGCGAGGAGACCTGCCAAAAACTGGATGC CGCATATTACGAATGCTGGCAGGCGCTGAAGAACAACTTTCAAATAACTA AAAATTAGCATATTTAACTGAAGCAAAACACGTTATGATAAAATTACAAT TAATTTTATTAGTAAATGTTGTTATTTGGGAAAAATCCATTCGCCAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hgo-RA | 1593 | hgo-RA | 91..1538 | 1..1448 | 7225 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 11136517..11136804 | 758..1045 | 1425 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 11135559..11135830 | 52..323 | 1360 | 100 | Plus |
chr2L | 23010047 | chr2L | 11137102..11137320 | 1225..1443 | 1095 | 100 | Plus |
chr2L | 23010047 | chr2L | 11135897..11136085 | 322..510 | 945 | 100 | Plus |
chr2L | 23010047 | chr2L | 11136859..11137041 | 1045..1227 | 915 | 100 | Plus |
chr2L | 23010047 | chr2L | 11136323..11136456 | 629..762 | 670 | 100 | Plus |
chr2L | 23010047 | chr2L | 11136150..11136272 | 510..632 | 615 | 100 | Plus |
chr2L | 23010047 | chr2L | 11135150..11135202 | 1..53 | 265 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11137762..11138049 | 758..1045 | 1425 | 99.7 | Plus |
2L | 23513712 | 2L | 11136804..11137075 | 52..323 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 11138347..11138570 | 1225..1448 | 1105 | 99.6 | Plus |
2L | 23513712 | 2L | 11137142..11137330 | 322..510 | 945 | 100 | Plus |
2L | 23513712 | 2L | 11138104..11138286 | 1045..1227 | 915 | 100 | Plus |
2L | 23513712 | 2L | 11137568..11137701 | 629..762 | 670 | 100 | Plus |
2L | 23513712 | 2L | 11137395..11137517 | 510..632 | 615 | 100 | Plus |
2L | 23513712 | 2L | 11136395..11136447 | 1..53 | 265 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11137762..11138049 | 758..1045 | 1425 | 99.6 | Plus |
2L | 23513712 | 2L | 11136804..11137075 | 52..323 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 11138347..11138570 | 1225..1448 | 1105 | 99.5 | Plus |
2L | 23513712 | 2L | 11137142..11137330 | 322..510 | 945 | 100 | Plus |
2L | 23513712 | 2L | 11138104..11138286 | 1045..1227 | 915 | 100 | Plus |
2L | 23513712 | 2L | 11137568..11137701 | 629..762 | 670 | 100 | Plus |
2L | 23513712 | 2L | 11137395..11137517 | 510..632 | 615 | 100 | Plus |
2L | 23513712 | 2L | 11136395..11136447 | 1..53 | 265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 11135150..11135202 | 1..53 | 100 | -> | Plus |
chr2L | 11135561..11135830 | 54..323 | 100 | -> | Plus |
chr2L | 11135899..11136085 | 324..510 | 100 | -> | Plus |
chr2L | 11136151..11136271 | 511..631 | 100 | -> | Plus |
chr2L | 11136326..11136456 | 632..762 | 100 | -> | Plus |
chr2L | 11136522..11136803 | 763..1044 | 100 | -> | Plus |
chr2L | 11136859..11137040 | 1045..1226 | 100 | -> | Plus |
chr2L | 11137104..11137322 | 1227..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1320 | 39..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1320 | 39..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1320 | 39..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1320 | 39..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1320 | 39..1358 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1445 | 1..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1445 | 1..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 3..1445 | 1..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 1..1445 | 1..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hgo-RA | 3..1445 | 1..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11137144..11137330 | 324..510 | 100 | -> | Plus |
2L | 11137396..11137516 | 511..631 | 100 | -> | Plus |
2L | 11137571..11137701 | 632..762 | 100 | -> | Plus |
2L | 11136395..11136447 | 1..53 | 100 | -> | Plus |
2L | 11136806..11137075 | 54..323 | 100 | -> | Plus |
2L | 11137767..11138048 | 763..1044 | 100 | -> | Plus |
2L | 11138104..11138285 | 1045..1226 | 100 | -> | Plus |
2L | 11138349..11138567 | 1227..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11137144..11137330 | 324..510 | 100 | -> | Plus |
2L | 11137396..11137516 | 511..631 | 100 | -> | Plus |
2L | 11137571..11137701 | 632..762 | 100 | -> | Plus |
2L | 11136395..11136447 | 1..53 | 100 | -> | Plus |
2L | 11136806..11137075 | 54..323 | 100 | -> | Plus |
2L | 11137767..11138048 | 763..1044 | 100 | -> | Plus |
2L | 11138104..11138285 | 1045..1226 | 100 | -> | Plus |
2L | 11138349..11138567 | 1227..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11137144..11137330 | 324..510 | 100 | -> | Plus |
2L | 11137396..11137516 | 511..631 | 100 | -> | Plus |
2L | 11137571..11137701 | 632..762 | 100 | -> | Plus |
2L | 11136395..11136447 | 1..53 | 100 | -> | Plus |
2L | 11136806..11137075 | 54..323 | 100 | -> | Plus |
2L | 11137767..11138048 | 763..1044 | 100 | -> | Plus |
2L | 11138104..11138285 | 1045..1226 | 100 | -> | Plus |
2L | 11138349..11138567 | 1227..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 11136395..11136447 | 1..53 | 100 | -> | Plus |
arm_2L | 11136806..11137075 | 54..323 | 100 | -> | Plus |
arm_2L | 11137144..11137330 | 324..510 | 100 | -> | Plus |
arm_2L | 11137396..11137516 | 511..631 | 100 | -> | Plus |
arm_2L | 11137571..11137701 | 632..762 | 100 | -> | Plus |
arm_2L | 11137767..11138048 | 763..1044 | 100 | -> | Plus |
arm_2L | 11138104..11138285 | 1045..1226 | 100 | -> | Plus |
arm_2L | 11138349..11138567 | 1227..1445 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11137767..11138048 | 763..1044 | 100 | -> | Plus |
2L | 11138104..11138285 | 1045..1226 | 100 | -> | Plus |
2L | 11137571..11137701 | 632..762 | 100 | -> | Plus |
2L | 11136806..11137075 | 54..323 | 100 | -> | Plus |
2L | 11137144..11137330 | 324..510 | 100 | -> | Plus |
2L | 11137396..11137516 | 511..631 | 100 | -> | Plus |
2L | 11138349..11138567 | 1227..1445 | 99 | Plus | |
2L | 11136395..11136447 | 1..53 | 100 | -> | Plus |
Translation from 38 to 1357
> RE48339.pep MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFT APRTENMRTWLYRKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKP FDLPPKDGKNVNFVEGLHTVCGAGDPRSRHGLAIHIYSCNGSMDNSAFYN SDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDSPSRGY ILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQ GRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTV LTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKY EAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPERVAEGTQAFMF ESSLSLAVTKWGEETCQKLDAAYYECWQALKNNFQITKN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14763-PA | 438 | GF14763-PA | 1..438 | 1..439 | 2209 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23710-PA | 439 | GG23710-PA | 1..439 | 1..439 | 2292 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10766-PA | 439 | GH10766-PA | 4..437 | 3..436 | 2059 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hgo-PA | 439 | CG4779-PA | 1..439 | 1..439 | 2398 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20619-PA | 438 | GI20619-PA | 1..436 | 1..436 | 2020 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19546-PA | 441 | GL19546-PA | 1..438 | 1..438 | 2068 | 85.8 | Plus |
Dper\GL12860-PA | 71 | GL12860-PA | 6..68 | 376..438 | 322 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18425-PA | 441 | GA18425-PA | 1..438 | 1..438 | 2199 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18940-PA | 439 | GM18940-PA | 1..439 | 1..439 | 2337 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23768-PA | 439 | GD23768-PA | 1..439 | 1..439 | 2346 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13212-PA | 438 | GJ13212-PA | 1..436 | 1..436 | 2081 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14896-PA | 437 | GK14896-PA | 1..436 | 1..436 | 2129 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18517-PA | 439 | GE18517-PA | 1..439 | 1..439 | 2306 | 96.4 | Plus |
Translation from 38 to 1357
> RE48339.hyp MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFT APRTENMRTWLYRKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKP FDLPPKDGKNVNFVEGLHTVCGAGDPRSRHGLAIHIYSCNGSMDNSAFYN SDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDSPSRGY ILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQ GRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTV LTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKY EAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPERVAEGTQAFMF ESSLSLAVTKWGEETCQKLDAAYYECWQALKNNFQITKN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hgo-PA | 439 | CG4779-PA | 1..439 | 1..439 | 2398 | 100 | Plus |