Clone RE48347 Report

Search the DGRC for RE48347

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:483
Well:47
Vector:pFlc-1
Associated Gene/TranscriptRab19-RA
Protein status:RE48347.pep: gold
Preliminary Size:1026
Sequenced Size:1042

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7062 2001-12-17 Blastp of sequenced clone
CG7062 2002-01-01 Sim4 clustering to Release 2
Rab-RP3 2008-04-29 Release 5.5 accounting
Rab-RP3 2008-08-15 Release 5.9 accounting
Rab-RP3 2008-12-18 5.12 accounting

Clone Sequence Records

RE48347.complete Sequence

1042 bp (1042 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071400

> RE48347.complete
AGTTTTTGCTTCACTTTGTTGTCATTGGAAAAGCAGGGCAGCAGGCAAAA
GAGACCAGTTAACGGCCAGAACGGCGGCCAAAAGATGACCGCCCGCAATC
CTCAGACACTGATGGCACTGCCAAACGAGGAACACTTCGACTTCCTGTTC
AAGATCGTCCTCATTGGTGACTGCGGGACGGGGAAGACCTGCATAGTGGA
CAGATTTAAGACAGGGAACTACATAGAGCGACATGGGAACACCATCGGAG
TGGACTTTTCGATGAAGACCATCGCCGTGGAGGGCAAACAAATCAAGCTA
CAAATCTGGGACACTGCTGGTCAGGAGAGGTTTCGCACTATTACGCAGAG
CTATTATCGCTCGGCCAACGGGGTCTTAATTGTTTACGACATCACCAAGC
GGTCTTCCTTTTCCAATCTGCAAAAATGGATCGAAGAAGTGCGTAGATAC
ACTGCTTCTAATGTTTTGATAATCCTCGTGGGCAACAAGTGCGATTTGGA
GGAGCAGCGCGAGGTGGACTTTGAAGAGGCGCGCCAGATGTGTCAATATA
TACCTGAGATCCTGTTCGTGATGGAGACCTCCGCCAAGGAGAACATGAAC
GTGGAGGACGCCTTCCGCTGCCTGGCCAACGAACTTAAACGCCAACACGA
TGCCAACAATGTGGAGGAGGTGCCAGAAAACACCATCACCTTGGGCCAGG
GAAAGCCTTTAAAGAGTTGCAGCAGCTCATGCAATCTCACCTAGACCTAA
ATCCGCTCTTTAGTTTGCTTTTACTTTTGTGATCAAATTGTTCTTGTGGC
TATATATTAGTATTCTAATGCTTTAACCTAATCCTAGACACTAACTTTTA
CACAACCATGTATTTATTTTTGACGATAGAGTACAAACAATCTCACACAT
CAGCGAATCGAGCCAACAATGTCAATTACAAGGCAATGCTCAGAGAGGCA
AATACGTCCACTTCTCTATTTGTAATTTGTATTCAATTTGATATGCGACA
GTGTCGAAATAAACTCGTTTATTTTGCAAAAAAAAAAAAAAA

RE48347.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rab-RP3-RA 1181 Rab-RP3-RA 62..1084 4..1026 5115 100 Plus
Rab-RP3.b 1077 Rab-RP3.b 73..1065 34..1026 4965 100 Plus
Rab-RP3.a 1071 Rab-RP3.a 70..1059 37..1026 4950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8290111..8290497 640..1026 1935 100 Plus
chr3L 24539361 chr3L 8289167..8289460 4..297 1455 99.7 Plus
chr3L 24539361 chr3L 8289802..8290059 382..639 1290 100 Plus
chr3L 24539361 chr3L 8289521..8289607 296..382 435 100 Plus
chr2L 23010047 chr2L 7030914..7031039 365..240 225 78.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8298120..8298506 640..1026 1935 100 Plus
3L 28110227 3L 8297179..8297472 4..297 1470 100 Plus
3L 28110227 3L 8297814..8298071 382..639 1290 100 Plus
3L 28110227 3L 8297533..8297619 296..382 435 100 Plus
2L 23513712 2L 7031867..7031992 365..240 225 78.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8291220..8291606 640..1026 1935 100 Plus
3L 28103327 3L 8290279..8290572 4..297 1470 100 Plus
3L 28103327 3L 8290914..8291171 382..639 1290 100 Plus
3L 28103327 3L 8290633..8290719 296..382 435 100 Plus
2L 23513712 2L 7031867..7031992 365..240 225 78.5 Minus
Blast to na_te.dros performed on 2019-03-16 07:29:50 has no hits.

RE48347.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:31:07 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8289165..8289460 1..297 99 -> Plus
chr3L 8289523..8289607 298..382 100 -> Plus
chr3L 8289803..8290059 383..639 100 -> Plus
chr3L 8290111..8290497 640..1027 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:41 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 1..660 85..744 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:11 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 1..660 85..744 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:31:58 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 1..660 85..744 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:55 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 1..660 85..744 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:15 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 1..660 85..744 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:39 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 6..1029 1..1025 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:11 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 6..1029 1..1025 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:58 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 9..1033 1..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:55 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 6..1029 1..1025 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:15 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 9..1033 1..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:07 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8297177..8297472 1..297 99 -> Plus
3L 8297535..8297619 298..382 100 -> Plus
3L 8297815..8298071 383..639 100 -> Plus
3L 8298120..8298506 640..1027 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:07 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8297177..8297472 1..297 99 -> Plus
3L 8297535..8297619 298..382 100 -> Plus
3L 8297815..8298071 383..639 100 -> Plus
3L 8298120..8298506 640..1027 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:07 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8297177..8297472 1..297 99 -> Plus
3L 8297535..8297619 298..382 100 -> Plus
3L 8297815..8298071 383..639 100 -> Plus
3L 8298120..8298506 640..1027 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:58 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8290277..8290572 1..297 99 -> Plus
arm_3L 8290635..8290719 298..382 100 -> Plus
arm_3L 8290915..8291171 383..639 100 -> Plus
arm_3L 8291220..8291606 640..1027 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:03 Download gff for RE48347.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8290277..8290572 1..297 99 -> Plus
3L 8290635..8290719 298..382 100 -> Plus
3L 8290915..8291171 383..639 100 -> Plus
3L 8291220..8291606 640..1027 99   Plus

RE48347.hyp Sequence

Translation from 2 to 743

> RE48347.hyp
FCFTLLSLEKQGSRQKRPVNGQNGGQKMTARNPQTLMALPNEEHFDFLFK
IVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQ
IWDTAGQERFRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYT
ASNVLIILVGNKCDLEEQREVDFEEARQMCQYIPEILFVMETSAKENMNV
EDAFRCLANELKRQHDANNVEEVPENTITLGQGKPLKSCSSSCNLT*

RE48347.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rab19-PB 219 CG7062-PP3-RB 1..219 28..246 1143 100 Plus
Rab19-PA 219 CG7062-PA 1..219 28..246 1143 100 Plus
Rab1-PA 205 CG3320-PA 8..204 45..243 478 46.2 Plus
Rab8-PC 207 CG8287-PC 5..181 45..219 441 48 Plus
Rab8-PA 207 CG8287-PA 5..181 45..219 441 48 Plus

RE48347.pep Sequence

Translation from 84 to 743

> RE48347.pep
MTARNPQTLMALPNEEHFDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERH
GNTIGVDFSMKTIAVEGKQIKLQIWDTAGQERFRTITQSYYRSANGVLIV
YDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFEEAR
QMCQYIPEILFVMETSAKENMNVEDAFRCLANELKRQHDANNVEEVPENT
ITLGQGKPLKSCSSSCNLT*

RE48347.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10872-PA 219 GF10872-PA 1..219 1..219 1146 96.8 Plus
Dana\GF17263-PA 205 GF17263-PA 1..204 1..216 487 44.2 Plus
Dana\GF10843-PA 207 GF10843-PA 5..181 18..192 446 48 Plus
Dana\GF11067-PA 213 GF11067-PA 3..189 18..205 438 46.1 Plus
Dana\GF14944-PA 225 GF14944-PA 2..170 16..187 437 51.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14295-PA 219 GG14295-PA 1..219 1..219 1179 100 Plus
Dere\GG14761-PA 205 GG14761-PA 1..204 1..216 488 44.2 Plus
Dere\GG13365-PA 207 GG13365-PA 5..181 18..192 446 48 Plus
Dere\GG23219-PA 213 GG23219-PA 3..189 18..205 438 46.1 Plus
Dere\GG23555-PA 223 GG23555-PA 2..170 16..187 437 51.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15503-PA 219 GH15503-PA 1..219 1..219 995 86.8 Plus
Dgri\GH18937-PA 205 GH18937-PA 1..204 1..216 483 44 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..181 18..192 448 48 Plus
Dgri\GH21751-PA 213 GH21751-PA 3..212 18..216 445 42.5 Plus
Dgri\GH13416-PA 226 GH13416-PA 2..167 16..184 440 52.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rab19-PB 219 CG7062-PP3-RB 1..219 1..219 1143 100 Plus
Rab19-PA 219 CG7062-PA 1..219 1..219 1143 100 Plus
Rab1-PA 205 CG3320-PA 8..204 18..216 478 46.2 Plus
Rab8-PC 207 CG8287-PC 5..181 18..192 441 48 Plus
Rab8-PA 207 CG8287-PA 5..181 18..192 441 48 Plus
Rab2-PB 213 CG3269-PB 3..212 18..216 426 42.5 Plus
Rab2-PA 213 CG3269-PA 3..212 18..216 426 42.5 Plus
Rab3-PB 220 CG7576-PB 15..180 15..182 424 44 Plus
Rab3-PA 220 CG7576-PA 15..180 15..182 424 44 Plus
Rab30-PD 223 CG9100-PD 2..167 16..184 424 52.1 Plus
Rab30-PC 223 CG9100-PC 2..167 16..184 424 52.1 Plus
Rab30-PB 223 CG9100-PB 2..167 16..184 424 52.1 Plus
Rab30-PA 223 CG9100-PA 2..167 16..184 424 52.1 Plus
Rab10-PA 204 CG17060-PA 6..187 18..201 417 45.1 Plus
Rab4-PA 213 CG4921-PA 3..162 16..177 416 50 Plus
Rab4-PB 213 CG4921-PB 3..162 16..177 416 50 Plus
Rab11-PA 214 CG5771-PA 5..189 15..201 416 43.3 Plus
Rab11-PB 214 CG5771-PB 5..189 15..201 416 43.3 Plus
Rab9Fb-PA 214 CG32670-PA 4..213 18..216 406 37.7 Plus
Rab14-PD 215 CG4212-PD 7..165 17..177 406 46.6 Plus
Rab14-PA 215 CG4212-PA 7..165 17..177 406 46.6 Plus
Rab14-PB 239 CG4212-PB 31..189 17..177 406 46.6 Plus
Rab26-PE 410 CG34410-PE 206..376 15..185 400 41.6 Plus
Rab26-PD 410 CG34410-PD 206..376 15..185 400 41.6 Plus
Rab26-PC 410 CG34410-PC 206..376 15..185 400 41.6 Plus
Rab35-PB 201 CG9575-PB 5..187 18..203 395 42.5 Plus
Rab35-PD 201 CG9575-PD 5..187 18..203 395 42.5 Plus
Rab35-PA 201 CG9575-PA 5..187 18..203 395 42.5 Plus
RabX4-PA 213 CG31118-PA 9..175 22..189 388 43.2 Plus
Rab5-PI 219 CG3664-PI 30..198 22..192 371 42.1 Plus
Rab5-PH 219 CG3664-PH 30..198 22..192 371 42.1 Plus
Rab5-PG 219 CG3664-PG 30..198 22..192 371 42.1 Plus
Rab5-PE 219 CG3664-PE 30..198 22..192 371 42.1 Plus
Rab5-PC 219 CG3664-PC 30..198 22..192 371 42.1 Plus
Rab5-PD 219 CG3664-PD 30..198 22..192 371 42.1 Plus
Rab5-PF 219 CG3664-PF 30..198 22..192 371 42.1 Plus
Rab5-PB 219 CG3664-PB 30..198 22..192 371 42.1 Plus
Rab5-PA 219 CG3664-PA 30..198 22..192 371 42.1 Plus
RabX2-PA 195 CG2885-PA 3..176 17..192 364 38.6 Plus
Rab6-PB 208 CG6601-PB 13..181 22..192 355 41.5 Plus
Rab6-PA 208 CG6601-PA 13..181 22..192 355 41.5 Plus
Rab26-PG 388 CG34410-PG 192..354 23..185 355 40 Plus
Rab26-PB 388 CG34410-PB 192..354 23..185 355 40 Plus
Rab8-PB 172 CG8287-PB 7..146 55..192 349 47.9 Plus
Rab35-PC 190 CG9575-PC 9..176 33..203 343 40.9 Plus
Rab39-PB 218 CG12156-PB 3..175 15..184 338 43.4 Plus
Rab39-PA 218 CG12156-PA 3..175 15..184 338 43.4 Plus
Rab18-PA 197 CG3129-PA 3..195 19..216 330 37.7 Plus
Rab21-PC 222 CG17515-PC 14..187 22..191 326 40.3 Plus
Rab21-PD 222 CG17515-PD 14..187 22..191 326 40.3 Plus
Rab7-PC 207 CG5915-PC 8..193 21..204 319 37 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16780-PA 219 GI16780-PA 1..219 1..219 1053 87.2 Plus
Dmoj\GI18299-PA 122 GI18299-PA 1..122 98..219 569 84.4 Plus
Dmoj\GI10837-PA 205 GI10837-PA 1..204 1..216 489 44 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..181 18..192 449 48.6 Plus
Dmoj\GI19298-PA 213 GI19298-PA 3..189 18..205 438 46.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22545-PA 219 GL22545-PA 1..219 1..219 1128 95.4 Plus
Dper\GL27164-PA 205 GL27164-PA 1..204 1..216 486 44.2 Plus
Dper\GL15675-PA 207 GL15675-PA 5..206 18..218 448 44.9 Plus
Dper\GL11116-PA 213 GL11116-PA 3..189 18..205 438 46.1 Plus
Dper\GL25775-PA 232 GL25775-PA 2..170 16..187 437 51.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20071-PA 219 GA20071-PA 1..219 1..219 1128 95.4 Plus
Dpse\GA17362-PA 205 GA17362-PA 1..204 1..216 486 44.2 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..206 18..218 448 44.9 Plus
Dpse\GA17076-PA 213 GA17076-PA 3..189 18..205 438 46.1 Plus
Dpse\GA21542-PA 230 GA21542-PA 2..170 16..187 437 51.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25038-PA 219 GM25038-PA 1..219 1..219 1169 99.5 Plus
Dsec\GM15089-PA 205 GM15089-PA 1..204 1..216 488 44.2 Plus
Dsec\GM15893-PA 207 GM15893-PA 5..181 18..192 446 48 Plus
Dsec\GM20894-PA 200 GM20894-PA 3..167 18..184 437 49.1 Plus
Dsec\GM13645-PA 223 GM13645-PA 2..170 16..187 436 51.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14074-PA 219 GD14074-PA 1..219 1..219 1179 100 Plus
Dsim\GD19996-PA 205 GD19996-PA 1..204 1..216 488 44.2 Plus
Dsim\GD12244-PA 207 GD12244-PA 5..181 18..192 446 48 Plus
Dsim\GD10420-PA 213 GD10420-PA 3..189 18..205 438 46.1 Plus
Dsim\GD11294-PA 213 GD11294-PA 3..162 16..177 429 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12523-PA 220 GJ12523-PA 1..220 1..219 1033 86.4 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 1..204 1..216 490 44 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..181 18..192 449 48.6 Plus
Dvir\GJ22175-PA 213 GJ22175-PA 3..212 18..216 445 42.5 Plus
Dvir\GJ18220-PA 225 GJ18220-PA 2..178 16..192 439 50.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17190-PA 219 GK17190-PA 1..219 1..219 1116 93.2 Plus
Dwil\GK12772-PA 205 GK12772-PA 1..204 1..216 489 44.2 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..206 18..218 458 44.9 Plus
Dwil\GK23088-PA 213 GK23088-PA 3..189 18..205 438 46.1 Plus
Dwil\GK14858-PA 230 GK14858-PA 2..170 16..187 438 51.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20724-PA 219 GE20724-PA 1..219 1..219 1179 100 Plus
Dyak\Rab1-PA 205 GE25003-PA 1..204 1..216 488 44.2 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..181 18..192 446 48 Plus
Dyak\GE19072-PA 213 GE19072-PA 3..189 18..205 438 46.1 Plus
Dyak\GE18380-PA 223 GE18380-PA 2..170 16..187 437 51.7 Plus