Clone RE48478 Report

Search the DGRC for RE48478

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:484
Well:78
Vector:pFlc-1
Associated Gene/TranscriptWRNexo-RC
Protein status:RE48478.pep: gold
Sequenced Size:1495

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7670 2010-12-02 CDS novel splice

Clone Sequence Records

RE48478.complete Sequence

1495 bp assembled on 2011-01-25

GenBank Submission: BT125935.1

> RE48478.complete
GAGTGAACAAAGCATTTAAGAAAACGAACAAGCAACGCGGGTTATGGAAA
AATATTTAACAAAAATGCCCATCAAATCAAAAGCAAATGAAGTTCCCAAG
GAGGCGGGCGTCAAAAAGGAGACTCCCAAAGTGGCAAGGAAAGCAACAAA
AAAGGATACTCCAAAAGAGTTGAAAGATAAAGAAAATGCTGGAGATGATA
ATACGCCAAAGCAAACGAAAGGAAGACCCGGTAGACCGGCTGCCAAGCGA
AAAAATCTGGATACTCCAGATGTGAAGACTGAGAAGTTAGCGATGGAGGA
AGAAAATCCGCCCAAGCGCCGGAGTTCCAGGCTGACCAGAAGCACTCGTT
CAATGGCAGAGGATGGGTCTCCATCACCGGAGAAGGAAAAGCCCGAAAAG
CTTCCCTTTATTAAATACAAGGGTGCTATAAAGTATTTCACGGAGAGCCA
GGATATTGCGGCATCTGCTGACGATGTTTTGCAATGGGTGGAAAAACAAA
AAGATGAGGTAGTGCCCATGGCCTTCGACATGGAGTGGCCCTTCTCTTTC
CAAACAGGACCTGGCAAGTCTGCCGTCATCCAGATATGCGTGGATGAAAA
GTGCTGCTACATATACCAGCTGACTAATGTGAAGAAACTGCCTGCGGCCC
TGGTGGCCCTTATCAATCATCCCAAAGTGCGATTGCATGGCGTGAACATA
AAGAACGATTTCCGAAAGCTGGCACGTGATTTCCCCGAGGTTACAGCCGA
ACCACTGATAGAGAAATGCGTGGACTTGGGTCTTTGGTGCAATGAGGTCT
GTGAGACCGGCGGGCGCTGGAGCTTGGAGCGATTAACCAACTTTATAGCC
AAGAAGGCCATGGACAAAAGCAAGAAGGTGCGCATGAGCAAGTGGCATGT
CATTCCGCTGGACGAGAATCAACTAATGTACGCCGCCATCGATGTCTATA
TTGGTCAGGTTATCTATCGTGAATTGGAACGCCGCGAGAAGGTCAAGATT
AAAAATGAAGAAGAGTTCAAGGAAAAGAACGGAGATGCTGCCTTTAAAGC
AATGAAAGCATTGGGAGAGACATTTCTGACCAAGATCAACGAGGTGACTC
TGTAAGCTTTTCTTTGAAGTTTCAGATATGCCATCTAATTCCTTTTACCT
GTTTAAATATTTTCGCCTTCTTTCATTTATTTTCGGGAGTTTTTCTTAGT
TTAATTTGTTACCAACGTGCTGCAAAATAATTGTTAAATTTAATATTGCT
ATCCAATTCGATTATTGATTACGATAACATTTATAGAATTGTTTATACCT
AAATGTACAAATTATAAACACATTTTGATGCATTGACTTTGATCGGAACG
AAATTTTACTAGTACTATACATTTTTGCATGAATTCTAGTTGGTTTATAA
ATTCCCTTAAAATTATATTAAGATTATACAGCTTTTTACACTTTTCAACT
TGCAATAAATTTTAATTTTGTAAATTCGCAAAAAAAAAAAAAAAA

RE48478.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14188444..14188974 1479..950 2545 99.1 Minus
chr3R 27901430 chr3R 14189031..14189274 949..706 1220 100 Minus
chr3R 27901430 chr3R 14189330..14189554 705..481 1125 100 Minus
chr3R 27901430 chr3R 14189616..14189823 481..274 995 98.6 Minus
chr3R 27901430 chr3R 14189881..14189987 274..168 505 98.1 Minus
chr3R 27901430 chr3R 14190245..14190345 102..2 490 99 Minus
chr3R 27901430 chr3R 14190119..14190189 169..99 355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18364231..18364765 1484..950 2660 99.8 Minus
3R 32079331 3R 18364822..18365065 949..706 1220 100 Minus
3R 32079331 3R 18365121..18365345 705..481 1125 100 Minus
3R 32079331 3R 18365407..18365614 481..274 1040 100 Minus
3R 32079331 3R 18365672..18365778 274..168 535 100 Minus
3R 32079331 3R 18366037..18366137 102..2 490 99 Minus
3R 32079331 3R 18365911..18365981 169..99 355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18105062..18105596 1484..950 2660 99.8 Minus
3R 31820162 3R 18105653..18105896 949..706 1220 100 Minus
3R 31820162 3R 18105952..18106176 705..481 1125 100 Minus
3R 31820162 3R 18106238..18106445 481..274 1040 100 Minus
3R 31820162 3R 18106503..18106609 274..168 535 100 Minus
3R 31820162 3R 18106868..18106968 102..2 490 99 Minus
3R 31820162 3R 18106742..18106812 169..99 355 100 Minus
Blast to na_te.dros performed 2019-03-17 01:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3706..3992 1402..1108 192 59.7 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 345..400 1191..1244 113 69.6 Plus

RE48478.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:32:47 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14188444..14188974 950..1479 99 <- Minus
chr3R 14189031..14189274 706..949 100 <- Minus
chr3R 14189330..14189554 481..705 100 <- Minus
chr3R 14189617..14189822 275..480 98 <- Minus
chr3R 14189881..14189985 170..274 98 <- Minus
chr3R 14190119..14190184 104..169 100 <- Minus
chr3R 14190244..14190345 1..103 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-25 17:09:41 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
WRNexo-RB 1..1065 44..1105 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:42:27 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
WRNexo-RC 1..1062 44..1105 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:01:27 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
WRNexo-RC 1..1062 44..1105 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:09:41 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
WRNexo-RB 39..1512 1..1471 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:42:27 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
WRNexo-RC 25..1495 1..1471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:01:27 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
WRNexo-RC 25..1495 1..1471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:32:47 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18364236..18364765 950..1479 100 <- Minus
3R 18364822..18365065 706..949 100 <- Minus
3R 18365121..18365345 481..705 100 <- Minus
3R 18365408..18365613 275..480 100 <- Minus
3R 18365672..18365776 170..274 100 <- Minus
3R 18365911..18365976 104..169 100 <- Minus
3R 18366036..18366137 1..103 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:32:47 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18364236..18364765 950..1479 100 <- Minus
3R 18364822..18365065 706..949 100 <- Minus
3R 18365121..18365345 481..705 100 <- Minus
3R 18365408..18365613 275..480 100 <- Minus
3R 18365672..18365776 170..274 100 <- Minus
3R 18365911..18365976 104..169 100 <- Minus
3R 18366036..18366137 1..103 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:32:47 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18364236..18364765 950..1479 100 <- Minus
3R 18364822..18365065 706..949 100 <- Minus
3R 18365121..18365345 481..705 100 <- Minus
3R 18365408..18365613 275..480 100 <- Minus
3R 18365672..18365776 170..274 100 <- Minus
3R 18365911..18365976 104..169 100 <- Minus
3R 18366036..18366137 1..103 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:42:27 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14189958..14190487 950..1479 100 <- Minus
arm_3R 14190544..14190787 706..949 100 <- Minus
arm_3R 14190843..14191067 481..705 100 <- Minus
arm_3R 14191130..14191335 275..480 100 <- Minus
arm_3R 14191394..14191498 170..274 100 <- Minus
arm_3R 14191633..14191698 104..169 100 <- Minus
arm_3R 14191758..14191859 1..103 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:55:48 Download gff for RE48478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18105067..18105596 950..1479 100 <- Minus
3R 18105653..18105896 706..949 100 <- Minus
3R 18105952..18106176 481..705 100 <- Minus
3R 18106239..18106444 275..480 100 <- Minus
3R 18106503..18106607 170..274 100 <- Minus
3R 18106742..18106807 104..169 100 <- Minus
3R 18106867..18106968 1..103 97   Minus

RE48478.pep Sequence

Translation from 43 to 1104

> RE48478.pep
MEKYLTKMPIKSKANEVPKEAGVKKETPKVARKATKKDTPKELKDKENAG
DDNTPKQTKGRPGRPAAKRKNLDTPDVKTEKLAMEEENPPKRRSSRLTRS
TRSMAEDGSPSPEKEKPEKLPFIKYKGAIKYFTESQDIAASADDVLQWVE
KQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLP
AALVALINHPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCN
EVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAID
VYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFLTKINE
VTL*

RE48478.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18118-PA 340 GF18118-PA 9..340 23..353 1413 81.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16480-PA 354 GG16480-PA 1..354 1..353 1706 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19231-PA 331 GH19231-PA 1..331 1..353 1310 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
WRNexo-PC 353 CG7670-PC 1..353 1..353 1843 100 Plus
WRNexo-PB 354 CG7670-PB 1..354 1..353 1831 99.7 Plus
WRNexo-PA 353 CG7670-PA 1..353 1..353 1814 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24264-PA 329 GI24264-PA 1..329 1..353 1342 73.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23198-PA 348 GL23198-PA 1..348 8..353 1479 80.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20513-PA 356 GA20513-PA 1..356 1..353 1502 79.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18710-PA 347 GM18710-PA 1..347 8..353 1781 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20178-PA 354 GD20178-PA 1..354 1..353 1817 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10837-PA 323 GJ10837-PA 19..323 52..353 1320 79 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11496-PA 349 GK11496-PA 1..349 8..353 1365 74 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25207-PA 354 GE25207-PA 1..354 1..353 1726 92.4 Plus

RE48478.hyp Sequence

Translation from 43 to 1104

> RE48478.hyp
MEKYLTKMPIKSKANEVPKEAGVKKETPKVARKATKKDTPKELKDKENAG
DDNTPKQTKGRPGRPAAKRKNLDTPDVKTEKLAMEEENPPKRRSSRLTRS
TRSMAEDGSPSPEKEKPEKLPFIKYKGAIKYFTESQDIAASADDVLQWVE
KQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLP
AALVALINHPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCN
EVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAID
VYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFLTKINE
VTL*

RE48478.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
WRNexo-PC 353 CG7670-PC 1..353 1..353 1843 100 Plus
WRNexo-PB 354 CG7670-PB 1..354 1..353 1831 99.7 Plus
WRNexo-PA 353 CG7670-PA 1..353 1..353 1814 99.4 Plus