BDGP Sequence Production Resources |
Search the DGRC for RE48478
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 484 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | WRNexo-RC |
Protein status: | RE48478.pep: gold |
Sequenced Size: | 1495 |
Gene | Date | Evidence |
---|---|---|
CG7670 | 2010-12-02 | CDS novel splice |
1495 bp assembled on 2011-01-25
GenBank Submission: BT125935.1
> RE48478.complete GAGTGAACAAAGCATTTAAGAAAACGAACAAGCAACGCGGGTTATGGAAA AATATTTAACAAAAATGCCCATCAAATCAAAAGCAAATGAAGTTCCCAAG GAGGCGGGCGTCAAAAAGGAGACTCCCAAAGTGGCAAGGAAAGCAACAAA AAAGGATACTCCAAAAGAGTTGAAAGATAAAGAAAATGCTGGAGATGATA ATACGCCAAAGCAAACGAAAGGAAGACCCGGTAGACCGGCTGCCAAGCGA AAAAATCTGGATACTCCAGATGTGAAGACTGAGAAGTTAGCGATGGAGGA AGAAAATCCGCCCAAGCGCCGGAGTTCCAGGCTGACCAGAAGCACTCGTT CAATGGCAGAGGATGGGTCTCCATCACCGGAGAAGGAAAAGCCCGAAAAG CTTCCCTTTATTAAATACAAGGGTGCTATAAAGTATTTCACGGAGAGCCA GGATATTGCGGCATCTGCTGACGATGTTTTGCAATGGGTGGAAAAACAAA AAGATGAGGTAGTGCCCATGGCCTTCGACATGGAGTGGCCCTTCTCTTTC CAAACAGGACCTGGCAAGTCTGCCGTCATCCAGATATGCGTGGATGAAAA GTGCTGCTACATATACCAGCTGACTAATGTGAAGAAACTGCCTGCGGCCC TGGTGGCCCTTATCAATCATCCCAAAGTGCGATTGCATGGCGTGAACATA AAGAACGATTTCCGAAAGCTGGCACGTGATTTCCCCGAGGTTACAGCCGA ACCACTGATAGAGAAATGCGTGGACTTGGGTCTTTGGTGCAATGAGGTCT GTGAGACCGGCGGGCGCTGGAGCTTGGAGCGATTAACCAACTTTATAGCC AAGAAGGCCATGGACAAAAGCAAGAAGGTGCGCATGAGCAAGTGGCATGT CATTCCGCTGGACGAGAATCAACTAATGTACGCCGCCATCGATGTCTATA TTGGTCAGGTTATCTATCGTGAATTGGAACGCCGCGAGAAGGTCAAGATT AAAAATGAAGAAGAGTTCAAGGAAAAGAACGGAGATGCTGCCTTTAAAGC AATGAAAGCATTGGGAGAGACATTTCTGACCAAGATCAACGAGGTGACTC TGTAAGCTTTTCTTTGAAGTTTCAGATATGCCATCTAATTCCTTTTACCT GTTTAAATATTTTCGCCTTCTTTCATTTATTTTCGGGAGTTTTTCTTAGT TTAATTTGTTACCAACGTGCTGCAAAATAATTGTTAAATTTAATATTGCT ATCCAATTCGATTATTGATTACGATAACATTTATAGAATTGTTTATACCT AAATGTACAAATTATAAACACATTTTGATGCATTGACTTTGATCGGAACG AAATTTTACTAGTACTATACATTTTTGCATGAATTCTAGTTGGTTTATAA ATTCCCTTAAAATTATATTAAGATTATACAGCTTTTTACACTTTTCAACT TGCAATAAATTTTAATTTTGTAAATTCGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14188444..14188974 | 1479..950 | 2545 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 14189031..14189274 | 949..706 | 1220 | 100 | Minus |
chr3R | 27901430 | chr3R | 14189330..14189554 | 705..481 | 1125 | 100 | Minus |
chr3R | 27901430 | chr3R | 14189616..14189823 | 481..274 | 995 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 14189881..14189987 | 274..168 | 505 | 98.1 | Minus |
chr3R | 27901430 | chr3R | 14190245..14190345 | 102..2 | 490 | 99 | Minus |
chr3R | 27901430 | chr3R | 14190119..14190189 | 169..99 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18364231..18364765 | 1484..950 | 2660 | 99.8 | Minus |
3R | 32079331 | 3R | 18364822..18365065 | 949..706 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 18365121..18365345 | 705..481 | 1125 | 100 | Minus |
3R | 32079331 | 3R | 18365407..18365614 | 481..274 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 18365672..18365778 | 274..168 | 535 | 100 | Minus |
3R | 32079331 | 3R | 18366037..18366137 | 102..2 | 490 | 99 | Minus |
3R | 32079331 | 3R | 18365911..18365981 | 169..99 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 18105062..18105596 | 1484..950 | 2660 | 99.8 | Minus |
3R | 31820162 | 3R | 18105653..18105896 | 949..706 | 1220 | 100 | Minus |
3R | 31820162 | 3R | 18105952..18106176 | 705..481 | 1125 | 100 | Minus |
3R | 31820162 | 3R | 18106238..18106445 | 481..274 | 1040 | 100 | Minus |
3R | 31820162 | 3R | 18106503..18106609 | 274..168 | 535 | 100 | Minus |
3R | 31820162 | 3R | 18106868..18106968 | 102..2 | 490 | 99 | Minus |
3R | 31820162 | 3R | 18106742..18106812 | 169..99 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3706..3992 | 1402..1108 | 192 | 59.7 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 345..400 | 1191..1244 | 113 | 69.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14188444..14188974 | 950..1479 | 99 | <- | Minus |
chr3R | 14189031..14189274 | 706..949 | 100 | <- | Minus |
chr3R | 14189330..14189554 | 481..705 | 100 | <- | Minus |
chr3R | 14189617..14189822 | 275..480 | 98 | <- | Minus |
chr3R | 14189881..14189985 | 170..274 | 98 | <- | Minus |
chr3R | 14190119..14190184 | 104..169 | 100 | <- | Minus |
chr3R | 14190244..14190345 | 1..103 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
WRNexo-RB | 1..1065 | 44..1105 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
WRNexo-RC | 1..1062 | 44..1105 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
WRNexo-RC | 1..1062 | 44..1105 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
WRNexo-RB | 39..1512 | 1..1471 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
WRNexo-RC | 25..1495 | 1..1471 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
WRNexo-RC | 25..1495 | 1..1471 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18364236..18364765 | 950..1479 | 100 | <- | Minus |
3R | 18364822..18365065 | 706..949 | 100 | <- | Minus |
3R | 18365121..18365345 | 481..705 | 100 | <- | Minus |
3R | 18365408..18365613 | 275..480 | 100 | <- | Minus |
3R | 18365672..18365776 | 170..274 | 100 | <- | Minus |
3R | 18365911..18365976 | 104..169 | 100 | <- | Minus |
3R | 18366036..18366137 | 1..103 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18364236..18364765 | 950..1479 | 100 | <- | Minus |
3R | 18364822..18365065 | 706..949 | 100 | <- | Minus |
3R | 18365121..18365345 | 481..705 | 100 | <- | Minus |
3R | 18365408..18365613 | 275..480 | 100 | <- | Minus |
3R | 18365672..18365776 | 170..274 | 100 | <- | Minus |
3R | 18365911..18365976 | 104..169 | 100 | <- | Minus |
3R | 18366036..18366137 | 1..103 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18364236..18364765 | 950..1479 | 100 | <- | Minus |
3R | 18364822..18365065 | 706..949 | 100 | <- | Minus |
3R | 18365121..18365345 | 481..705 | 100 | <- | Minus |
3R | 18365408..18365613 | 275..480 | 100 | <- | Minus |
3R | 18365672..18365776 | 170..274 | 100 | <- | Minus |
3R | 18365911..18365976 | 104..169 | 100 | <- | Minus |
3R | 18366036..18366137 | 1..103 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14189958..14190487 | 950..1479 | 100 | <- | Minus |
arm_3R | 14190544..14190787 | 706..949 | 100 | <- | Minus |
arm_3R | 14190843..14191067 | 481..705 | 100 | <- | Minus |
arm_3R | 14191130..14191335 | 275..480 | 100 | <- | Minus |
arm_3R | 14191394..14191498 | 170..274 | 100 | <- | Minus |
arm_3R | 14191633..14191698 | 104..169 | 100 | <- | Minus |
arm_3R | 14191758..14191859 | 1..103 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18105067..18105596 | 950..1479 | 100 | <- | Minus |
3R | 18105653..18105896 | 706..949 | 100 | <- | Minus |
3R | 18105952..18106176 | 481..705 | 100 | <- | Minus |
3R | 18106239..18106444 | 275..480 | 100 | <- | Minus |
3R | 18106503..18106607 | 170..274 | 100 | <- | Minus |
3R | 18106742..18106807 | 104..169 | 100 | <- | Minus |
3R | 18106867..18106968 | 1..103 | 97 | Minus |
Translation from 43 to 1104
> RE48478.pep MEKYLTKMPIKSKANEVPKEAGVKKETPKVARKATKKDTPKELKDKENAG DDNTPKQTKGRPGRPAAKRKNLDTPDVKTEKLAMEEENPPKRRSSRLTRS TRSMAEDGSPSPEKEKPEKLPFIKYKGAIKYFTESQDIAASADDVLQWVE KQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLP AALVALINHPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCN EVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAID VYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFLTKINE VTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18118-PA | 340 | GF18118-PA | 9..340 | 23..353 | 1413 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16480-PA | 354 | GG16480-PA | 1..354 | 1..353 | 1706 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19231-PA | 331 | GH19231-PA | 1..331 | 1..353 | 1310 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
WRNexo-PC | 353 | CG7670-PC | 1..353 | 1..353 | 1843 | 100 | Plus |
WRNexo-PB | 354 | CG7670-PB | 1..354 | 1..353 | 1831 | 99.7 | Plus |
WRNexo-PA | 353 | CG7670-PA | 1..353 | 1..353 | 1814 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24264-PA | 329 | GI24264-PA | 1..329 | 1..353 | 1342 | 73.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23198-PA | 348 | GL23198-PA | 1..348 | 8..353 | 1479 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20513-PA | 356 | GA20513-PA | 1..356 | 1..353 | 1502 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18710-PA | 347 | GM18710-PA | 1..347 | 8..353 | 1781 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20178-PA | 354 | GD20178-PA | 1..354 | 1..353 | 1817 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10837-PA | 323 | GJ10837-PA | 19..323 | 52..353 | 1320 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11496-PA | 349 | GK11496-PA | 1..349 | 8..353 | 1365 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25207-PA | 354 | GE25207-PA | 1..354 | 1..353 | 1726 | 92.4 | Plus |
Translation from 43 to 1104
> RE48478.hyp MEKYLTKMPIKSKANEVPKEAGVKKETPKVARKATKKDTPKELKDKENAG DDNTPKQTKGRPGRPAAKRKNLDTPDVKTEKLAMEEENPPKRRSSRLTRS TRSMAEDGSPSPEKEKPEKLPFIKYKGAIKYFTESQDIAASADDVLQWVE KQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLP AALVALINHPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCN EVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAID VYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFLTKINE VTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
WRNexo-PC | 353 | CG7670-PC | 1..353 | 1..353 | 1843 | 100 | Plus |
WRNexo-PB | 354 | CG7670-PB | 1..354 | 1..353 | 1831 | 99.7 | Plus |
WRNexo-PA | 353 | CG7670-PA | 1..353 | 1..353 | 1814 | 99.4 | Plus |