Clone RE48509 Report

Search the DGRC for RE48509

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:485
Well:9
Vector:pFlc-1
Associated Gene/TranscriptSyx6-RD
Protein status:RE48509.pep: gold
Sequenced Size:1997

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7736 2002-10-19 Blastp of sequenced clone
Syx6 2008-04-29 Release 5.5 accounting
Syx6 2008-08-15 Release 5.9 accounting
Syx6 2008-12-18 5.12 accounting

Clone Sequence Records

RE48509.complete Sequence

1997 bp (1997 high quality bases) assembled on 2002-10-19

GenBank Submission: BT001663

> RE48509.complete
AGTGTTCTCTGGGCCATCGGTGGAACCAGCTAAGTCGGCGGAATCCACAA
GAAATCGAGCGATAAGCGGCGGAGCGGGTCCAAGTGCAATAATCAATAAA
CGTGCTGTTCAAACATCGCTGCTAGGCGAAAGATAAAACCCAGTCGATTG
TGAAATTCCTGCTATATAGAACGGATTGAAAGCAAAAATTTGCTCCCCAT
TTGCTTGCCTTTTGATGTAACTCCCACGAAGTGCTTTTGCTATTGCCAAC
TTGCAATTTGCCCCCTTGTACCTTTGGGGGGTGGTTTTCGCCCGGAAAAA
TCCATGAAAAGAACCGTCAAGTGCGCCACGCTGGTGAAAAACTGCTAGGA
GTGTTAGTTTTCGTTTTGTGGCAAGAAGAGAACGCGGCATGTCTCTGGAG
GATCCGTTTTTCGTGGTCAAGGACGAGGTATTCAAAGCTCTGAACAAAAC
CCGCGGCCTCTATCTGCGTTGGCGGGAGCTGGGCGAGAACGGCGGAACGG
AGGCTGAATGGACCACCACCGAGCTGCGTAACTCGCTACGGAGCATCGAG
TGGGATCTCGAGGACCTCGAGGACACTATCAGCATCGTTGAGAAGAATCC
AAGCAAGTTTCGGATCGACAACCGCGAACTCTCCAGCCGGCGCCACTTCA
TCGACAACACTCGCGATGAGGTCAAGCAGATGAAGGATAAGATGAGCCTG
AACCGGAGCCGGGACAGAGACATCACCGCACACCAGCCGCTGCTCGACAA
CGATCGCCACAGCCCCAATCACAATCATTCCATTGCCATACCCAATTCGA
ATTCCAACTCCAACGAGTACCATCAGCATCCACACAACGATCGCACGTAC
CTCGTGGAGTGTCCCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGT
GGCCAATACCATAGCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCC
GCCACAGCGGCACCAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCC
AGTCACTATGGGCAGACGCATCACGGCGGCATGGACAGTCCGAGTCATAG
GTACGTGGGCGAAACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGG
ATGAGCAGCTAGACATGATCAGCGATTCGATTGGTACCCTCAAGACGGTC
TCGCGGCAAATTGGCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGA
CTTTGGGAACGAGTTCGATACCACGGAGTCCAAGTTGGATACGACCATGA
AGAAAGTTGCCAAAGTCTTGCACATGAATAATGATAAACGACAGTGGGCC
GCCATTCTCATCCTATCCGGACTGTTATTGTTTGTGATAATTTTGTTTAT
TATTTTGTAATTGCTTTCGTTGTTCCCAAATCGTTTATATTTAGTGTAAA
TTAGATTTATTTATGACTTAGCTTGCTTTTGAATTCGGGCTCTTAATTAC
AATTCCATGTAAACTCCCTTGCTGTATATACACGGAAACATTTTAACCTG
ATTTATTACCAGCCGCCTCTCTCTATATATATATAATGTAATTCCAAAGC
TACGGACAAATGATCATGTAAAGTCAATGTAGGCGGGTAATAAAAGATAA
CTAACTACTTACATATAAACCAAGTGCTCCAGAGTTCTGTCATTCCCAAT
TTGGCCAAAGGATACTGCAACTGTAAGCTGTATATACATCGAAGGATATA
TCTGCATATATATACATACAAACAAAATGGACCTACCAATATCAAACGAG
TTATTTAACGAAGAGTCTTAGGAAATTTCACTAACCAAATCTAGCAAAAA
CTTGTATGCAATTGAGTAAATATATATACTTATAAATTAAATTCCTAATT
TAAAGCCAAATGAGGTACTTCTTACGGGTCACCTAGAAATACTGTATGAG
TGCACAGAGAGAAATTGTATACATATACAAAAATTTGTTCGCTATTTTGA
AAGCCTAAATTAAACAAAAATTGGAAATACGAAAAAAAAAAAAAAAA

RE48509.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 2016 Syx6-RD 35..2014 1..1980 9900 100 Plus
Syx6-RE 2121 Syx6-RE 563..2119 424..1980 7785 100 Plus
Syx6-RB 1747 Syx6-RB 189..1745 424..1980 7785 100 Plus
Syx6-RE 2121 Syx6-RE 35..457 1..423 2115 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7109245..7109942 1283..1980 3475 99.9 Plus
chr2R 21145070 chr2R 7108390..7109091 582..1283 3465 99.6 Plus
chr2R 21145070 chr2R 7107394..7107816 1..423 2070 99.3 Plus
chr2R 21145070 chr2R 7107922..7108079 424..581 790 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11220928..11221629 582..1283 3510 100 Plus
2R 25286936 2R 11221783..11222480 1283..1980 3490 100 Plus
2R 25286936 2R 11219936..11220358 1..423 2115 100 Plus
2R 25286936 2R 11220464..11220621 424..581 790 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11222127..11222828 582..1283 3510 100 Plus
2R 25260384 2R 11222982..11223679 1283..1980 3490 100 Plus
2R 25260384 2R 11221135..11221557 1..423 2115 100 Plus
2R 25260384 2R 11221663..11221820 424..581 790 100 Plus
Blast to na_te.dros performed 2019-03-16 21:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1420..1583 1815..1979 149 59.1 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1597..1681 1405..1320 148 69.7 Minus
Circe 7450 Circe CIRC 7450bp 6560..6645 1798..1879 114 62.8 Plus

RE48509.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:16:27 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7107394..7107816 1..423 99 -> Plus
chr2R 7107922..7108079 424..581 100 -> Plus
chr2R 7108390..7109091 582..1283 99 -> Plus
chr2R 7109246..7109942 1284..1981 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:43 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..972 389..1360 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:22 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..972 389..1360 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:44 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..972 389..1360 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:17 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..972 389..1360 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:59 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..972 389..1360 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:30:12 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..1980 1..1981 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:22 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..1980 1..1981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:44 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 3..1982 1..1980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:36 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..1980 1..1981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:59 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 3..1982 1..1980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:27 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11219936..11220358 1..423 100 -> Plus
2R 11220464..11220621 424..581 100 -> Plus
2R 11220928..11221629 582..1283 100 -> Plus
2R 11221784..11222480 1284..1981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:27 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11219936..11220358 1..423 100 -> Plus
2R 11220464..11220621 424..581 100 -> Plus
2R 11220928..11221629 582..1283 100 -> Plus
2R 11221784..11222480 1284..1981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:27 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11219936..11220358 1..423 100 -> Plus
2R 11220464..11220621 424..581 100 -> Plus
2R 11220928..11221629 582..1283 100 -> Plus
2R 11221784..11222480 1284..1981 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:44 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7107441..7107863 1..423 100 -> Plus
arm_2R 7107969..7108126 424..581 100 -> Plus
arm_2R 7108433..7109134 582..1283 100 -> Plus
arm_2R 7109289..7109985 1284..1981 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:47 Download gff for RE48509.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11221135..11221557 1..423 100 -> Plus
2R 11221663..11221820 424..581 100 -> Plus
2R 11222127..11222828 582..1283 100 -> Plus
2R 11222983..11223679 1284..1981 99   Plus

RE48509.hyp Sequence

Translation from 388 to 1359

> RE48509.hyp
MSLEDPFFVVKDEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSL
RSIEWDLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKD
KMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHN
DRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENA
LDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGT
LKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDK
RQWAAILILSGLLLFVIILFIIL*

RE48509.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PD 323 CG7736-PD 1..323 1..323 1675 100 Plus
Syx6-PE 339 CG7736-PE 29..339 13..323 1613 100 Plus
Syx6-PB 226 CG7736-PB 1..226 98..323 1169 100 Plus

RE48509.pep Sequence

Translation from 388 to 1359

> RE48509.pep
MSLEDPFFVVKDEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSL
RSIEWDLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKD
KMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHN
DRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENA
LDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGT
LKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDK
RQWAAILILSGLLLFVIILFIIL*

RE48509.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12527-PA 327 GF12527-PA 1..327 1..323 1642 95.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20169-PA 323 GG20169-PA 1..323 1..323 1731 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21291-PA 317 GH21291-PA 1..317 1..323 1333 83.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PD 323 CG7736-PD 1..323 1..323 1675 100 Plus
Syx6-PE 339 CG7736-PE 29..339 13..323 1613 100 Plus
Syx6-PB 226 CG7736-PB 1..226 98..323 1169 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19781-PA 308 GI19781-PA 1..308 1..323 1372 85.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19968-PA 330 GL19968-PA 1..330 1..323 1497 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24086-PA 330 GA24086-PA 1..330 1..323 1506 90.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21258-PA 379 GM21258-PA 1..303 1..305 1599 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10772-PA 323 GD10772-PA 1..323 1..323 1704 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17697-PA 311 GJ17697-PA 1..311 1..323 1362 84.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20954-PA 338 GK20954-PA 1..338 1..323 1413 85.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12858-PA 323 GE12858-PA 1..323 1..323 1725 99.7 Plus