BDGP Sequence Production Resources |
Search the DGRC for RE48509
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 485 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Syx6-RD |
Protein status: | RE48509.pep: gold |
Sequenced Size: | 1997 |
Gene | Date | Evidence |
---|---|---|
CG7736 | 2002-10-19 | Blastp of sequenced clone |
Syx6 | 2008-04-29 | Release 5.5 accounting |
Syx6 | 2008-08-15 | Release 5.9 accounting |
Syx6 | 2008-12-18 | 5.12 accounting |
1997 bp (1997 high quality bases) assembled on 2002-10-19
GenBank Submission: BT001663
> RE48509.complete AGTGTTCTCTGGGCCATCGGTGGAACCAGCTAAGTCGGCGGAATCCACAA GAAATCGAGCGATAAGCGGCGGAGCGGGTCCAAGTGCAATAATCAATAAA CGTGCTGTTCAAACATCGCTGCTAGGCGAAAGATAAAACCCAGTCGATTG TGAAATTCCTGCTATATAGAACGGATTGAAAGCAAAAATTTGCTCCCCAT TTGCTTGCCTTTTGATGTAACTCCCACGAAGTGCTTTTGCTATTGCCAAC TTGCAATTTGCCCCCTTGTACCTTTGGGGGGTGGTTTTCGCCCGGAAAAA TCCATGAAAAGAACCGTCAAGTGCGCCACGCTGGTGAAAAACTGCTAGGA GTGTTAGTTTTCGTTTTGTGGCAAGAAGAGAACGCGGCATGTCTCTGGAG GATCCGTTTTTCGTGGTCAAGGACGAGGTATTCAAAGCTCTGAACAAAAC CCGCGGCCTCTATCTGCGTTGGCGGGAGCTGGGCGAGAACGGCGGAACGG AGGCTGAATGGACCACCACCGAGCTGCGTAACTCGCTACGGAGCATCGAG TGGGATCTCGAGGACCTCGAGGACACTATCAGCATCGTTGAGAAGAATCC AAGCAAGTTTCGGATCGACAACCGCGAACTCTCCAGCCGGCGCCACTTCA TCGACAACACTCGCGATGAGGTCAAGCAGATGAAGGATAAGATGAGCCTG AACCGGAGCCGGGACAGAGACATCACCGCACACCAGCCGCTGCTCGACAA CGATCGCCACAGCCCCAATCACAATCATTCCATTGCCATACCCAATTCGA ATTCCAACTCCAACGAGTACCATCAGCATCCACACAACGATCGCACGTAC CTCGTGGAGTGTCCCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGT GGCCAATACCATAGCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCC GCCACAGCGGCACCAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCC AGTCACTATGGGCAGACGCATCACGGCGGCATGGACAGTCCGAGTCATAG GTACGTGGGCGAAACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGG ATGAGCAGCTAGACATGATCAGCGATTCGATTGGTACCCTCAAGACGGTC TCGCGGCAAATTGGCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGA CTTTGGGAACGAGTTCGATACCACGGAGTCCAAGTTGGATACGACCATGA AGAAAGTTGCCAAAGTCTTGCACATGAATAATGATAAACGACAGTGGGCC GCCATTCTCATCCTATCCGGACTGTTATTGTTTGTGATAATTTTGTTTAT TATTTTGTAATTGCTTTCGTTGTTCCCAAATCGTTTATATTTAGTGTAAA TTAGATTTATTTATGACTTAGCTTGCTTTTGAATTCGGGCTCTTAATTAC AATTCCATGTAAACTCCCTTGCTGTATATACACGGAAACATTTTAACCTG ATTTATTACCAGCCGCCTCTCTCTATATATATATAATGTAATTCCAAAGC TACGGACAAATGATCATGTAAAGTCAATGTAGGCGGGTAATAAAAGATAA CTAACTACTTACATATAAACCAAGTGCTCCAGAGTTCTGTCATTCCCAAT TTGGCCAAAGGATACTGCAACTGTAAGCTGTATATACATCGAAGGATATA TCTGCATATATATACATACAAACAAAATGGACCTACCAATATCAAACGAG TTATTTAACGAAGAGTCTTAGGAAATTTCACTAACCAAATCTAGCAAAAA CTTGTATGCAATTGAGTAAATATATATACTTATAAATTAAATTCCTAATT TAAAGCCAAATGAGGTACTTCTTACGGGTCACCTAGAAATACTGTATGAG TGCACAGAGAGAAATTGTATACATATACAAAAATTTGTTCGCTATTTTGA AAGCCTAAATTAAACAAAAATTGGAAATACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx6-RD | 2016 | Syx6-RD | 35..2014 | 1..1980 | 9900 | 100 | Plus |
Syx6-RE | 2121 | Syx6-RE | 563..2119 | 424..1980 | 7785 | 100 | Plus |
Syx6-RB | 1747 | Syx6-RB | 189..1745 | 424..1980 | 7785 | 100 | Plus |
Syx6-RE | 2121 | Syx6-RE | 35..457 | 1..423 | 2115 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7109245..7109942 | 1283..1980 | 3475 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 7108390..7109091 | 582..1283 | 3465 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 7107394..7107816 | 1..423 | 2070 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 7107922..7108079 | 424..581 | 790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11220928..11221629 | 582..1283 | 3510 | 100 | Plus |
2R | 25286936 | 2R | 11221783..11222480 | 1283..1980 | 3490 | 100 | Plus |
2R | 25286936 | 2R | 11219936..11220358 | 1..423 | 2115 | 100 | Plus |
2R | 25286936 | 2R | 11220464..11220621 | 424..581 | 790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11222127..11222828 | 582..1283 | 3510 | 100 | Plus |
2R | 25260384 | 2R | 11222982..11223679 | 1283..1980 | 3490 | 100 | Plus |
2R | 25260384 | 2R | 11221135..11221557 | 1..423 | 2115 | 100 | Plus |
2R | 25260384 | 2R | 11221663..11221820 | 424..581 | 790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1420..1583 | 1815..1979 | 149 | 59.1 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1597..1681 | 1405..1320 | 148 | 69.7 | Minus |
Circe | 7450 | Circe CIRC 7450bp | 6560..6645 | 1798..1879 | 114 | 62.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7107394..7107816 | 1..423 | 99 | -> | Plus |
chr2R | 7107922..7108079 | 424..581 | 100 | -> | Plus |
chr2R | 7108390..7109091 | 582..1283 | 99 | -> | Plus |
chr2R | 7109246..7109942 | 1284..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..972 | 389..1360 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..972 | 389..1360 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..972 | 389..1360 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..972 | 389..1360 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..972 | 389..1360 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..1980 | 1..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..1980 | 1..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 3..1982 | 1..1980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 1..1980 | 1..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 3..1982 | 1..1980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11219936..11220358 | 1..423 | 100 | -> | Plus |
2R | 11220464..11220621 | 424..581 | 100 | -> | Plus |
2R | 11220928..11221629 | 582..1283 | 100 | -> | Plus |
2R | 11221784..11222480 | 1284..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11219936..11220358 | 1..423 | 100 | -> | Plus |
2R | 11220464..11220621 | 424..581 | 100 | -> | Plus |
2R | 11220928..11221629 | 582..1283 | 100 | -> | Plus |
2R | 11221784..11222480 | 1284..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11219936..11220358 | 1..423 | 100 | -> | Plus |
2R | 11220464..11220621 | 424..581 | 100 | -> | Plus |
2R | 11220928..11221629 | 582..1283 | 100 | -> | Plus |
2R | 11221784..11222480 | 1284..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7107441..7107863 | 1..423 | 100 | -> | Plus |
arm_2R | 7107969..7108126 | 424..581 | 100 | -> | Plus |
arm_2R | 7108433..7109134 | 582..1283 | 100 | -> | Plus |
arm_2R | 7109289..7109985 | 1284..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11221135..11221557 | 1..423 | 100 | -> | Plus |
2R | 11221663..11221820 | 424..581 | 100 | -> | Plus |
2R | 11222127..11222828 | 582..1283 | 100 | -> | Plus |
2R | 11222983..11223679 | 1284..1981 | 99 | Plus |
Translation from 388 to 1359
> RE48509.hyp MSLEDPFFVVKDEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSL RSIEWDLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKD KMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHN DRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENA LDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGT LKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDK RQWAAILILSGLLLFVIILFIIL*
Translation from 388 to 1359
> RE48509.pep MSLEDPFFVVKDEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSL RSIEWDLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKD KMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHN DRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENA LDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGT LKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDK RQWAAILILSGLLLFVIILFIIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12527-PA | 327 | GF12527-PA | 1..327 | 1..323 | 1642 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20169-PA | 323 | GG20169-PA | 1..323 | 1..323 | 1731 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21291-PA | 317 | GH21291-PA | 1..317 | 1..323 | 1333 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx6-PD | 323 | CG7736-PD | 1..323 | 1..323 | 1675 | 100 | Plus |
Syx6-PE | 339 | CG7736-PE | 29..339 | 13..323 | 1613 | 100 | Plus |
Syx6-PB | 226 | CG7736-PB | 1..226 | 98..323 | 1169 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19781-PA | 308 | GI19781-PA | 1..308 | 1..323 | 1372 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19968-PA | 330 | GL19968-PA | 1..330 | 1..323 | 1497 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24086-PA | 330 | GA24086-PA | 1..330 | 1..323 | 1506 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21258-PA | 379 | GM21258-PA | 1..303 | 1..305 | 1599 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10772-PA | 323 | GD10772-PA | 1..323 | 1..323 | 1704 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17697-PA | 311 | GJ17697-PA | 1..311 | 1..323 | 1362 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20954-PA | 338 | GK20954-PA | 1..338 | 1..323 | 1413 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12858-PA | 323 | GE12858-PA | 1..323 | 1..323 | 1725 | 99.7 | Plus |