Clone RE48511 Report

Search the DGRC for RE48511

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:485
Well:11
Vector:pFlc-1
Associated Gene/TranscriptCG16786-RA
Protein status:RE48511.pep: gold
Preliminary Size:2531
Sequenced Size:2835

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16786 2002-01-01 Sim4 clustering to Release 2
CG16786 2002-07-13 Blastp of sequenced clone
CG16786 2003-01-01 Sim4 clustering to Release 3
CG16786 2008-04-29 Release 5.5 accounting
CG16786 2008-08-15 Release 5.9 accounting
CG16786 2008-12-18 5.12 accounting

Clone Sequence Records

RE48511.complete Sequence

2835 bp (2835 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001664

> RE48511.complete
AGGTACGTTCGGTTTGGGATTCGGATTCATTCGTTGCCACTCCAGCTCTA
TGCTCCGCGTTGGACCCACCGATAGCTTGGCTTTCTGCTACAGTTTCATA
ATTGTCTCGGCCAGCAGCAGCGGAGTTCATGATTTCGCTCGGAATATGTT
TTAGCCAGATCAGTGCTTGGAAAATGCACTTTTGAGCGTGTAAGTGTATG
TGGCAAGTAGCTGGCGAACGTGAATGAAAACATGAGCTGCCACTGAACGA
AACCCACTCTCGAGCTGGAAGTGCAAATCTTATCAATTTTTTTTCTGAGC
TTTTCACCTGCCGAGTTTTACGAATATGCTGCGCTACCTGCTCATTCTTT
GCGCCCTCGGAAGCGCTACTTGCGGCGATGTTGAGCTACTAACTCAAACT
GTCTATGGCTTCCTGGACTTCACAACCACGATTGGGAATACCGTCATGGT
GTTCTCACCCCAAAGTTCTCCAGCCTTTGAACTTAAATCCAACGACACGC
ACGAAATAATAAATATTATAGAGACTAAGCCGAAAGTGACGAAGAAGGAA
AAGGAGAATGTCGGCATCAAGCCAACGCCTTTGATCGTGACTCACTCGAA
TGAAATTCCCGAAACCGAGACATCCCAGATTGAATCTTACAACATAAGTC
TCTCCAACTCGCCCATCCAAACGCTTTTGAATACCCCCGAATACGATCTG
CTCTCCCGCCAGCCCGAGCAGTTTGCCGAAGAAACCTATCGCCTGGTCAA
CTTCAAGTCCAAGAGCGAGGCTGATCGCCAAAGGATATACCCGTCCAAGA
AGGAGCCCGTACATGGCTACCAGGCTACGAGATCCACTGAATTCAGGAGC
ATTGTGACGGCAACCAAGGACTCTGGTAAATTCTCCAAGGTCTCCCAGGT
TCACGCAGTCTCCAGTGTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGA
CCAACAAACCAGTTACGCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAG
TCCTCTATCCAGACCCAACTAGCCAGCAAGCCACCAAGGAAGAGCCACCA
AAGTGGTCGCGACAACCGAGGATCGTCGGGCACCAGAAAGCCTTCGCGTC
CCAAGGGAAAGCGGAGGAACAAACACACCCAGAGTTCCAAGCCGACAGTA
GCTCCATCAGCAACTGAAACTACCTCCCGCCACTCGTATCGGTCGAAAGC
AAATGCGAATGCTGTGCAGGAGGAGCCAGTGTCCGTCGTGAGTCCCAATG
CATTCAAGCTCAACAGGCGTCCTGGCAGATGGCAGTACAAGTCCTCGCCG
AAGCCCAAGGTGAACATAAGGAAGAACGCAAACCCCAATCTGCCCACCAC
CGTTCAAAACGACACGGCTCCCAGTGATGAGATCCCCGTGGACATCATCA
CCAACCAGGCCATAAACAACGGCAGGGATCTTGAGGCGTCCGGATCACAG
AACGGCCCAGTTGCGAACAACAATAACGACGATCCCAACTCCAAATACTT
TGTGCAGACGTTGAACGTTGAGATATCGACACCGCAACCATTCATAGACA
CCTATTACGAAATTGCGACCATTAAGACTCCGTTTATATTCCAGGCTGGC
GTGGTTAAGAAAACGCGCTTCCTGACCGTCACCTCAACCATTGAGAAGGT
GATCCAGGAGGAGCACACCAAGGAGTACTCCGAAGACGATGGCCCGCTGA
CGGAGAACATTTTGGAGGCCACCGCCAGCACCGATGATAAGACCTTAACA
GGCAGCGTTACGACCTTGAAGCCCATCTATCTGGGCGAGGAGACCGAGAC
CCCCAGCCTGGAGACCATAACGGAGTCCTTTTCCATAACGCACACCAAGC
TGAAGACCCAGATCCTCCCAGTTGTGTACGCAAAAAGGAACGAGACCATC
CAAGTTACCCTAGTTCAGACGTACGATTACACCAGTCTCATCACTGTAAC
ACAGACCATTTCCCCCTTGAGCGACGACTTCAATCCCTCAAAGAACTTCA
AGGACTTCGAAGGAAGTTTGGACGAGGCTGGGTCGGAAATCAACCTGGAC
CTCGAGTTCGGAGATGAAGATAATACGGGCAAATTCGACGCAAAGATTAA
ACCAAAACTCAAAGTTGAGGCCAAGAGTAATGTAACTAGCCCGATAAACC
CTCTGCTCCCGGAATCGATTAGCTTCCCGGAAACGCTGCAAAACAGCTTG
ATAACTTCCACGCGACCCGTGATCAAGCTCGAGACCATCTGGGAGTCCCA
TGTGGTGCCGCTTGTCAGAGGCACCGAGACCATCATGAGAACCCTCTCCA
AGTCCGTGGGTGTGGTGGAGAAGACGGAATACGTCACTGATGTCGCCACG
ATTTCCATGCCAACGCCATCCTCGCAGTATCCCTTCTCGATCAACCCATT
CAATCCCTTCAACCCACTCTTGCCCATTGCCCCGCAACAGTTCATCACAT
CCACCGAGGTCCAGCAGTCCATGGTAACGGAAACGAGCTCCAAGGTTCTA
AAGCTGACCTTTGGCGCGAGGACCGCCTACACCACCATCTTCTCAACCTC
TGTCGTTCCCACAGCTGTCACTAGATTAATAACCGCCACCATTCCCGGCC
AGCCAGGCCAATCCTTCCCCAACTACTTTCCGCCTCCTTACAATCCATTC
GCCTATGTTGGCTAGTTTTTAGGAGCATCTACGCAAGCGAGAGTGTCTAA
CCCCATTACTTCTTTGTAATTAGGAATCCTGTATTATATTTAAGAACACG
TGCAAATATCGAAAAGGCGGTGATACAAAAAGCAGTAGATTTTATTATAT
TGTATGTGCACTTTGTCGCAAAAAAAAAAAAAAAA

RE48511.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786.d 3226 CG16786.d 274..3093 4..2823 14085 99.9 Plus
CG16786-RA 3133 CG16786-RA 92..2911 4..2823 14085 99.9 Plus
CG16786.b 3050 CG16786.b 554..2856 521..2823 11515 100 Plus
CG16786.b 3050 CG16786.b 79..555 4..480 2370 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19970904..19972131 1592..2819 6020 99.3 Plus
chr2R 21145070 chr2R 19969629..19970261 479..1114 2965 98.1 Plus
chr2R 21145070 chr2R 19970313..19970795 1113..1595 2400 99.8 Plus
chr2R 21145070 chr2R 19967744..19968016 4..276 1335 99.3 Plus
chr2R 21145070 chr2R 19969448..19969562 365..479 575 100 Plus
chr2R 21145070 chr2R 19968959..19969047 277..365 430 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24084929..24086160 1592..2823 6160 100 Plus
2R 25286936 2R 24083651..24084286 479..1114 3180 100 Plus
2R 25286936 2R 24084338..24084820 1113..1595 2415 100 Plus
2R 25286936 2R 24081766..24082038 4..276 1350 99.6 Plus
2R 25286936 2R 24083470..24083584 365..479 575 100 Plus
2R 25286936 2R 24082981..24083069 277..365 445 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24086128..24087359 1592..2823 6160 100 Plus
2R 25260384 2R 24084850..24085485 479..1114 3180 100 Plus
2R 25260384 2R 24085537..24086019 1113..1595 2415 100 Plus
2R 25260384 2R 24082965..24083237 4..276 1350 99.6 Plus
2R 25260384 2R 24084669..24084783 365..479 575 100 Plus
2R 25260384 2R 24084180..24084268 277..365 445 100 Plus
Blast to na_te.dros performed 2019-03-16 14:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6046..6118 476..546 116 67.6 Plus

RE48511.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:06:03 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19967769..19968016 29..276 99 -> Plus
chr2R 19968959..19969047 277..365 98 -> Plus
chr2R 19969449..19969562 366..479 100 -> Plus
chr2R 19969630..19970260 480..1113 98 -> Plus
chr2R 19970314..19970794 1114..1594 99 -> Plus
chr2R 19970907..19972131 1595..2819 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:44 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 1..2340 326..2665 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:16:58 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 1..2340 326..2665 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:45:34 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 1..2340 326..2665 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:08:11 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 1..2340 326..2665 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:23:06 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 1..2340 326..2665 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:41:08 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 32..2850 1..2819 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:16:58 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 32..2850 1..2819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:45:34 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 1..2800 20..2819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:08:11 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 32..2850 1..2819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:06 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 1..2800 20..2819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:06:03 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24081763..24082038 1..276 99 -> Plus
2R 24082981..24083069 277..365 100 -> Plus
2R 24083471..24083584 366..479 100 -> Plus
2R 24083652..24084285 480..1113 100 -> Plus
2R 24084339..24084819 1114..1594 100 -> Plus
2R 24084932..24086156 1595..2819 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:06:03 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24081763..24082038 1..276 99 -> Plus
2R 24082981..24083069 277..365 100 -> Plus
2R 24083471..24083584 366..479 100 -> Plus
2R 24083652..24084285 480..1113 100 -> Plus
2R 24084339..24084819 1114..1594 100 -> Plus
2R 24084932..24086156 1595..2819 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:06:03 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24081763..24082038 1..276 99 -> Plus
2R 24082981..24083069 277..365 100 -> Plus
2R 24083471..24083584 366..479 100 -> Plus
2R 24083652..24084285 480..1113 100 -> Plus
2R 24084339..24084819 1114..1594 100 -> Plus
2R 24084932..24086156 1595..2819 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:45:34 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19969286..19969561 1..276 99 -> Plus
arm_2R 19970504..19970592 277..365 100 -> Plus
arm_2R 19970994..19971107 366..479 100 -> Plus
arm_2R 19971175..19971808 480..1113 100 -> Plus
arm_2R 19971862..19972342 1114..1594 100 -> Plus
arm_2R 19972455..19973679 1595..2819 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:40:04 Download gff for RE48511.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24082980..24083255 1..276 99 -> Plus
2R 24084198..24084286 277..365 100 -> Plus
2R 24084688..24084801 366..479 100 -> Plus
2R 24084869..24085502 480..1113 100 -> Plus
2R 24085556..24086036 1114..1594 100 -> Plus
2R 24086149..24087373 1595..2819 100   Plus

RE48511.pep Sequence

Translation from 325 to 2664

> RE48511.pep
MLRYLLILCALGSATCGDVELLTQTVYGFLDFTTTIGNTVMVFSPQSSPA
FELKSNDTHEIINIIETKPKVTKKEKENVGIKPTPLIVTHSNEIPETETS
QIESYNISLSNSPIQTLLNTPEYDLLSRQPEQFAEETYRLVNFKSKSEAD
RQRIYPSKKEPVHGYQATRSTEFRSIVTATKDSGKFSKVSQVHAVSSVEK
KSKPRQSRTNKPVTPSIQPSRTLKESSIQTQLASKPPRKSHQSGRDNRGS
SGTRKPSRPKGKRRNKHTQSSKPTVAPSATETTSRHSYRSKANANAVQEE
PVSVVSPNAFKLNRRPGRWQYKSSPKPKVNIRKNANPNLPTTVQNDTAPS
DEIPVDIITNQAINNGRDLEASGSQNGPVANNNNDDPNSKYFVQTLNVEI
STPQPFIDTYYEIATIKTPFIFQAGVVKKTRFLTVTSTIEKVIQEEHTKE
YSEDDGPLTENILEATASTDDKTLTGSVTTLKPIYLGEETETPSLETITE
SFSITHTKLKTQILPVVYAKRNETIQVTLVQTYDYTSLITVTQTISPLSD
DFNPSKNFKDFEGSLDEAGSEINLDLEFGDEDNTGKFDAKIKPKLKVEAK
SNVTSPINPLLPESISFPETLQNSLITSTRPVIKLETIWESHVVPLVRGT
ETIMRTLSKSVGVVEKTEYVTDVATISMPTPSSQYPFSINPFNPFNPLLP
IAPQQFITSTEVQQSMVTETSSKVLKLTFGARTAYTTIFSTSVVPTAVTR
LITATIPGQPGQSFPNYFPPPYNPFAYVG*

RE48511.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11370-PA 774 GF11370-PA 1..774 1..779 3163 82 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22939-PA 781 GG22939-PA 1..781 1..779 3922 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20171-PA 788 GH20171-PA 5..768 1..759 1917 54.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-PC 779 CG16786-PC 1..779 1..779 3979 100 Plus
CG16786-PA 779 CG16786-PA 1..779 1..779 3979 100 Plus
CG16786-PB 779 CG16786-PB 1..779 1..779 3979 100 Plus
CG17211-PA 1354 CG17211-PA 645..1086 178..582 169 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20704-PA 772 GI20704-PA 7..772 13..779 1873 55.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11665-PA 760 GL11665-PA 1..760 1..779 2619 73.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14148-PB 790 GA14148-PB 1..780 1..772 2543 70.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18304-PA 778 GM18304-PA 1..778 1..779 3965 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15461-PA 728 GD15461-PA 1..728 1..779 3661 91.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19692-PA 441 GJ19692-PA 81..441 424..779 1164 64.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21920-PA 792 GK21920-PA 1..792 1..779 2312 63.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14377-PA 782 GE14377-PA 1..782 1..779 3904 95.9 Plus

RE48511.hyp Sequence

Translation from 325 to 2664

> RE48511.hyp
MLRYLLILCALGSATCGDVELLTQTVYGFLDFTTTIGNTVMVFSPQSSPA
FELKSNDTHEIINIIETKPKVTKKEKENVGIKPTPLIVTHSNEIPETETS
QIESYNISLSNSPIQTLLNTPEYDLLSRQPEQFAEETYRLVNFKSKSEAD
RQRIYPSKKEPVHGYQATRSTEFRSIVTATKDSGKFSKVSQVHAVSSVEK
KSKPRQSRTNKPVTPSIQPSRTLKESSIQTQLASKPPRKSHQSGRDNRGS
SGTRKPSRPKGKRRNKHTQSSKPTVAPSATETTSRHSYRSKANANAVQEE
PVSVVSPNAFKLNRRPGRWQYKSSPKPKVNIRKNANPNLPTTVQNDTAPS
DEIPVDIITNQAINNGRDLEASGSQNGPVANNNNDDPNSKYFVQTLNVEI
STPQPFIDTYYEIATIKTPFIFQAGVVKKTRFLTVTSTIEKVIQEEHTKE
YSEDDGPLTENILEATASTDDKTLTGSVTTLKPIYLGEETETPSLETITE
SFSITHTKLKTQILPVVYAKRNETIQVTLVQTYDYTSLITVTQTISPLSD
DFNPSKNFKDFEGSLDEAGSEINLDLEFGDEDNTGKFDAKIKPKLKVEAK
SNVTSPINPLLPESISFPETLQNSLITSTRPVIKLETIWESHVVPLVRGT
ETIMRTLSKSVGVVEKTEYVTDVATISMPTPSSQYPFSINPFNPFNPLLP
IAPQQFITSTEVQQSMVTETSSKVLKLTFGARTAYTTIFSTSVVPTAVTR
LITATIPGQPGQSFPNYFPPPYNPFAYVG*

RE48511.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-PC 779 CG16786-PC 1..779 1..779 3979 100 Plus
CG16786-PA 779 CG16786-PA 1..779 1..779 3979 100 Plus
CG16786-PB 779 CG16786-PB 1..779 1..779 3979 100 Plus
CG17211-PA 1354 CG17211-PA 645..1086 178..582 169 23.3 Plus