BDGP Sequence Production Resources |
Search the DGRC for RE48511
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 485 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG16786-RA |
Protein status: | RE48511.pep: gold |
Preliminary Size: | 2531 |
Sequenced Size: | 2835 |
Gene | Date | Evidence |
---|---|---|
CG16786 | 2002-01-01 | Sim4 clustering to Release 2 |
CG16786 | 2002-07-13 | Blastp of sequenced clone |
CG16786 | 2003-01-01 | Sim4 clustering to Release 3 |
CG16786 | 2008-04-29 | Release 5.5 accounting |
CG16786 | 2008-08-15 | Release 5.9 accounting |
CG16786 | 2008-12-18 | 5.12 accounting |
2835 bp (2835 high quality bases) assembled on 2002-07-13
GenBank Submission: BT001664
> RE48511.complete AGGTACGTTCGGTTTGGGATTCGGATTCATTCGTTGCCACTCCAGCTCTA TGCTCCGCGTTGGACCCACCGATAGCTTGGCTTTCTGCTACAGTTTCATA ATTGTCTCGGCCAGCAGCAGCGGAGTTCATGATTTCGCTCGGAATATGTT TTAGCCAGATCAGTGCTTGGAAAATGCACTTTTGAGCGTGTAAGTGTATG TGGCAAGTAGCTGGCGAACGTGAATGAAAACATGAGCTGCCACTGAACGA AACCCACTCTCGAGCTGGAAGTGCAAATCTTATCAATTTTTTTTCTGAGC TTTTCACCTGCCGAGTTTTACGAATATGCTGCGCTACCTGCTCATTCTTT GCGCCCTCGGAAGCGCTACTTGCGGCGATGTTGAGCTACTAACTCAAACT GTCTATGGCTTCCTGGACTTCACAACCACGATTGGGAATACCGTCATGGT GTTCTCACCCCAAAGTTCTCCAGCCTTTGAACTTAAATCCAACGACACGC ACGAAATAATAAATATTATAGAGACTAAGCCGAAAGTGACGAAGAAGGAA AAGGAGAATGTCGGCATCAAGCCAACGCCTTTGATCGTGACTCACTCGAA TGAAATTCCCGAAACCGAGACATCCCAGATTGAATCTTACAACATAAGTC TCTCCAACTCGCCCATCCAAACGCTTTTGAATACCCCCGAATACGATCTG CTCTCCCGCCAGCCCGAGCAGTTTGCCGAAGAAACCTATCGCCTGGTCAA CTTCAAGTCCAAGAGCGAGGCTGATCGCCAAAGGATATACCCGTCCAAGA AGGAGCCCGTACATGGCTACCAGGCTACGAGATCCACTGAATTCAGGAGC ATTGTGACGGCAACCAAGGACTCTGGTAAATTCTCCAAGGTCTCCCAGGT TCACGCAGTCTCCAGTGTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGA CCAACAAACCAGTTACGCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAG TCCTCTATCCAGACCCAACTAGCCAGCAAGCCACCAAGGAAGAGCCACCA AAGTGGTCGCGACAACCGAGGATCGTCGGGCACCAGAAAGCCTTCGCGTC CCAAGGGAAAGCGGAGGAACAAACACACCCAGAGTTCCAAGCCGACAGTA GCTCCATCAGCAACTGAAACTACCTCCCGCCACTCGTATCGGTCGAAAGC AAATGCGAATGCTGTGCAGGAGGAGCCAGTGTCCGTCGTGAGTCCCAATG CATTCAAGCTCAACAGGCGTCCTGGCAGATGGCAGTACAAGTCCTCGCCG AAGCCCAAGGTGAACATAAGGAAGAACGCAAACCCCAATCTGCCCACCAC CGTTCAAAACGACACGGCTCCCAGTGATGAGATCCCCGTGGACATCATCA CCAACCAGGCCATAAACAACGGCAGGGATCTTGAGGCGTCCGGATCACAG AACGGCCCAGTTGCGAACAACAATAACGACGATCCCAACTCCAAATACTT TGTGCAGACGTTGAACGTTGAGATATCGACACCGCAACCATTCATAGACA CCTATTACGAAATTGCGACCATTAAGACTCCGTTTATATTCCAGGCTGGC GTGGTTAAGAAAACGCGCTTCCTGACCGTCACCTCAACCATTGAGAAGGT GATCCAGGAGGAGCACACCAAGGAGTACTCCGAAGACGATGGCCCGCTGA CGGAGAACATTTTGGAGGCCACCGCCAGCACCGATGATAAGACCTTAACA GGCAGCGTTACGACCTTGAAGCCCATCTATCTGGGCGAGGAGACCGAGAC CCCCAGCCTGGAGACCATAACGGAGTCCTTTTCCATAACGCACACCAAGC TGAAGACCCAGATCCTCCCAGTTGTGTACGCAAAAAGGAACGAGACCATC CAAGTTACCCTAGTTCAGACGTACGATTACACCAGTCTCATCACTGTAAC ACAGACCATTTCCCCCTTGAGCGACGACTTCAATCCCTCAAAGAACTTCA AGGACTTCGAAGGAAGTTTGGACGAGGCTGGGTCGGAAATCAACCTGGAC CTCGAGTTCGGAGATGAAGATAATACGGGCAAATTCGACGCAAAGATTAA ACCAAAACTCAAAGTTGAGGCCAAGAGTAATGTAACTAGCCCGATAAACC CTCTGCTCCCGGAATCGATTAGCTTCCCGGAAACGCTGCAAAACAGCTTG ATAACTTCCACGCGACCCGTGATCAAGCTCGAGACCATCTGGGAGTCCCA TGTGGTGCCGCTTGTCAGAGGCACCGAGACCATCATGAGAACCCTCTCCA AGTCCGTGGGTGTGGTGGAGAAGACGGAATACGTCACTGATGTCGCCACG ATTTCCATGCCAACGCCATCCTCGCAGTATCCCTTCTCGATCAACCCATT CAATCCCTTCAACCCACTCTTGCCCATTGCCCCGCAACAGTTCATCACAT CCACCGAGGTCCAGCAGTCCATGGTAACGGAAACGAGCTCCAAGGTTCTA AAGCTGACCTTTGGCGCGAGGACCGCCTACACCACCATCTTCTCAACCTC TGTCGTTCCCACAGCTGTCACTAGATTAATAACCGCCACCATTCCCGGCC AGCCAGGCCAATCCTTCCCCAACTACTTTCCGCCTCCTTACAATCCATTC GCCTATGTTGGCTAGTTTTTAGGAGCATCTACGCAAGCGAGAGTGTCTAA CCCCATTACTTCTTTGTAATTAGGAATCCTGTATTATATTTAAGAACACG TGCAAATATCGAAAAGGCGGTGATACAAAAAGCAGTAGATTTTATTATAT TGTATGTGCACTTTGTCGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16786.d | 3226 | CG16786.d | 274..3093 | 4..2823 | 14085 | 99.9 | Plus |
CG16786-RA | 3133 | CG16786-RA | 92..2911 | 4..2823 | 14085 | 99.9 | Plus |
CG16786.b | 3050 | CG16786.b | 554..2856 | 521..2823 | 11515 | 100 | Plus |
CG16786.b | 3050 | CG16786.b | 79..555 | 4..480 | 2370 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19970904..19972131 | 1592..2819 | 6020 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 19969629..19970261 | 479..1114 | 2965 | 98.1 | Plus |
chr2R | 21145070 | chr2R | 19970313..19970795 | 1113..1595 | 2400 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 19967744..19968016 | 4..276 | 1335 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 19969448..19969562 | 365..479 | 575 | 100 | Plus |
chr2R | 21145070 | chr2R | 19968959..19969047 | 277..365 | 430 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24084929..24086160 | 1592..2823 | 6160 | 100 | Plus |
2R | 25286936 | 2R | 24083651..24084286 | 479..1114 | 3180 | 100 | Plus |
2R | 25286936 | 2R | 24084338..24084820 | 1113..1595 | 2415 | 100 | Plus |
2R | 25286936 | 2R | 24081766..24082038 | 4..276 | 1350 | 99.6 | Plus |
2R | 25286936 | 2R | 24083470..24083584 | 365..479 | 575 | 100 | Plus |
2R | 25286936 | 2R | 24082981..24083069 | 277..365 | 445 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24086128..24087359 | 1592..2823 | 6160 | 100 | Plus |
2R | 25260384 | 2R | 24084850..24085485 | 479..1114 | 3180 | 100 | Plus |
2R | 25260384 | 2R | 24085537..24086019 | 1113..1595 | 2415 | 100 | Plus |
2R | 25260384 | 2R | 24082965..24083237 | 4..276 | 1350 | 99.6 | Plus |
2R | 25260384 | 2R | 24084669..24084783 | 365..479 | 575 | 100 | Plus |
2R | 25260384 | 2R | 24084180..24084268 | 277..365 | 445 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6046..6118 | 476..546 | 116 | 67.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19967769..19968016 | 29..276 | 99 | -> | Plus |
chr2R | 19968959..19969047 | 277..365 | 98 | -> | Plus |
chr2R | 19969449..19969562 | 366..479 | 100 | -> | Plus |
chr2R | 19969630..19970260 | 480..1113 | 98 | -> | Plus |
chr2R | 19970314..19970794 | 1114..1594 | 99 | -> | Plus |
chr2R | 19970907..19972131 | 1595..2819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 1..2340 | 326..2665 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 1..2340 | 326..2665 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RB | 1..2340 | 326..2665 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 1..2340 | 326..2665 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RB | 1..2340 | 326..2665 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 32..2850 | 1..2819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 32..2850 | 1..2819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 1..2800 | 20..2819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 32..2850 | 1..2819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16786-RA | 1..2800 | 20..2819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24081763..24082038 | 1..276 | 99 | -> | Plus |
2R | 24082981..24083069 | 277..365 | 100 | -> | Plus |
2R | 24083471..24083584 | 366..479 | 100 | -> | Plus |
2R | 24083652..24084285 | 480..1113 | 100 | -> | Plus |
2R | 24084339..24084819 | 1114..1594 | 100 | -> | Plus |
2R | 24084932..24086156 | 1595..2819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24081763..24082038 | 1..276 | 99 | -> | Plus |
2R | 24082981..24083069 | 277..365 | 100 | -> | Plus |
2R | 24083471..24083584 | 366..479 | 100 | -> | Plus |
2R | 24083652..24084285 | 480..1113 | 100 | -> | Plus |
2R | 24084339..24084819 | 1114..1594 | 100 | -> | Plus |
2R | 24084932..24086156 | 1595..2819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24081763..24082038 | 1..276 | 99 | -> | Plus |
2R | 24082981..24083069 | 277..365 | 100 | -> | Plus |
2R | 24083471..24083584 | 366..479 | 100 | -> | Plus |
2R | 24083652..24084285 | 480..1113 | 100 | -> | Plus |
2R | 24084339..24084819 | 1114..1594 | 100 | -> | Plus |
2R | 24084932..24086156 | 1595..2819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19969286..19969561 | 1..276 | 99 | -> | Plus |
arm_2R | 19970504..19970592 | 277..365 | 100 | -> | Plus |
arm_2R | 19970994..19971107 | 366..479 | 100 | -> | Plus |
arm_2R | 19971175..19971808 | 480..1113 | 100 | -> | Plus |
arm_2R | 19971862..19972342 | 1114..1594 | 100 | -> | Plus |
arm_2R | 19972455..19973679 | 1595..2819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24082980..24083255 | 1..276 | 99 | -> | Plus |
2R | 24084198..24084286 | 277..365 | 100 | -> | Plus |
2R | 24084688..24084801 | 366..479 | 100 | -> | Plus |
2R | 24084869..24085502 | 480..1113 | 100 | -> | Plus |
2R | 24085556..24086036 | 1114..1594 | 100 | -> | Plus |
2R | 24086149..24087373 | 1595..2819 | 100 | Plus |
Translation from 325 to 2664
> RE48511.pep MLRYLLILCALGSATCGDVELLTQTVYGFLDFTTTIGNTVMVFSPQSSPA FELKSNDTHEIINIIETKPKVTKKEKENVGIKPTPLIVTHSNEIPETETS QIESYNISLSNSPIQTLLNTPEYDLLSRQPEQFAEETYRLVNFKSKSEAD RQRIYPSKKEPVHGYQATRSTEFRSIVTATKDSGKFSKVSQVHAVSSVEK KSKPRQSRTNKPVTPSIQPSRTLKESSIQTQLASKPPRKSHQSGRDNRGS SGTRKPSRPKGKRRNKHTQSSKPTVAPSATETTSRHSYRSKANANAVQEE PVSVVSPNAFKLNRRPGRWQYKSSPKPKVNIRKNANPNLPTTVQNDTAPS DEIPVDIITNQAINNGRDLEASGSQNGPVANNNNDDPNSKYFVQTLNVEI STPQPFIDTYYEIATIKTPFIFQAGVVKKTRFLTVTSTIEKVIQEEHTKE YSEDDGPLTENILEATASTDDKTLTGSVTTLKPIYLGEETETPSLETITE SFSITHTKLKTQILPVVYAKRNETIQVTLVQTYDYTSLITVTQTISPLSD DFNPSKNFKDFEGSLDEAGSEINLDLEFGDEDNTGKFDAKIKPKLKVEAK SNVTSPINPLLPESISFPETLQNSLITSTRPVIKLETIWESHVVPLVRGT ETIMRTLSKSVGVVEKTEYVTDVATISMPTPSSQYPFSINPFNPFNPLLP IAPQQFITSTEVQQSMVTETSSKVLKLTFGARTAYTTIFSTSVVPTAVTR LITATIPGQPGQSFPNYFPPPYNPFAYVG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11370-PA | 774 | GF11370-PA | 1..774 | 1..779 | 3163 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22939-PA | 781 | GG22939-PA | 1..781 | 1..779 | 3922 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20171-PA | 788 | GH20171-PA | 5..768 | 1..759 | 1917 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16786-PC | 779 | CG16786-PC | 1..779 | 1..779 | 3979 | 100 | Plus |
CG16786-PA | 779 | CG16786-PA | 1..779 | 1..779 | 3979 | 100 | Plus |
CG16786-PB | 779 | CG16786-PB | 1..779 | 1..779 | 3979 | 100 | Plus |
CG17211-PA | 1354 | CG17211-PA | 645..1086 | 178..582 | 169 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20704-PA | 772 | GI20704-PA | 7..772 | 13..779 | 1873 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11665-PA | 760 | GL11665-PA | 1..760 | 1..779 | 2619 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14148-PB | 790 | GA14148-PB | 1..780 | 1..772 | 2543 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18304-PA | 778 | GM18304-PA | 1..778 | 1..779 | 3965 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15461-PA | 728 | GD15461-PA | 1..728 | 1..779 | 3661 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19692-PA | 441 | GJ19692-PA | 81..441 | 424..779 | 1164 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21920-PA | 792 | GK21920-PA | 1..792 | 1..779 | 2312 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14377-PA | 782 | GE14377-PA | 1..782 | 1..779 | 3904 | 95.9 | Plus |
Translation from 325 to 2664
> RE48511.hyp MLRYLLILCALGSATCGDVELLTQTVYGFLDFTTTIGNTVMVFSPQSSPA FELKSNDTHEIINIIETKPKVTKKEKENVGIKPTPLIVTHSNEIPETETS QIESYNISLSNSPIQTLLNTPEYDLLSRQPEQFAEETYRLVNFKSKSEAD RQRIYPSKKEPVHGYQATRSTEFRSIVTATKDSGKFSKVSQVHAVSSVEK KSKPRQSRTNKPVTPSIQPSRTLKESSIQTQLASKPPRKSHQSGRDNRGS SGTRKPSRPKGKRRNKHTQSSKPTVAPSATETTSRHSYRSKANANAVQEE PVSVVSPNAFKLNRRPGRWQYKSSPKPKVNIRKNANPNLPTTVQNDTAPS DEIPVDIITNQAINNGRDLEASGSQNGPVANNNNDDPNSKYFVQTLNVEI STPQPFIDTYYEIATIKTPFIFQAGVVKKTRFLTVTSTIEKVIQEEHTKE YSEDDGPLTENILEATASTDDKTLTGSVTTLKPIYLGEETETPSLETITE SFSITHTKLKTQILPVVYAKRNETIQVTLVQTYDYTSLITVTQTISPLSD DFNPSKNFKDFEGSLDEAGSEINLDLEFGDEDNTGKFDAKIKPKLKVEAK SNVTSPINPLLPESISFPETLQNSLITSTRPVIKLETIWESHVVPLVRGT ETIMRTLSKSVGVVEKTEYVTDVATISMPTPSSQYPFSINPFNPFNPLLP IAPQQFITSTEVQQSMVTETSSKVLKLTFGARTAYTTIFSTSVVPTAVTR LITATIPGQPGQSFPNYFPPPYNPFAYVG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16786-PC | 779 | CG16786-PC | 1..779 | 1..779 | 3979 | 100 | Plus |
CG16786-PA | 779 | CG16786-PA | 1..779 | 1..779 | 3979 | 100 | Plus |
CG16786-PB | 779 | CG16786-PB | 1..779 | 1..779 | 3979 | 100 | Plus |
CG17211-PA | 1354 | CG17211-PA | 645..1086 | 178..582 | 169 | 23.3 | Plus |