Clone RE48767 Report

Search the DGRC for RE48767

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:487
Well:67
Vector:pFlc-1
Associated Gene/TranscriptCG10590-RA
Protein status:RE48767.pep: gold
Preliminary Size:1863
Sequenced Size:2662

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10590 2001-12-17 Blastp of sequenced clone
CG10590 2002-01-01 Sim4 clustering to Release 2
CG10590 2003-01-01 Sim4 clustering to Release 3
CG10590 2008-04-29 Release 5.5 accounting
CG10590 2008-08-15 Release 5.9 accounting
CG10590 2008-12-18 5.12 accounting

Clone Sequence Records

RE48767.complete Sequence

2662 bp (2662 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071401

> RE48767.complete
ATCGATGTTTCTCCACCTCTAAGATACAACCCTAAAATATTTCTGCTGTC
GGCAAATCTGAGTGTTTGCCACAAAACTGTTTGAAAACGCAATCCCAGCG
AGGGCAACCGAATCAGGCCGGCAGAGCGAGGTCACCAGGAAGACGCGCAA
ACGAGGTCACCACCTGCACAAGACACAATGGGCAGCAGCGCCACGCAAAC
CACGGTGCCGTTCCGTGCAATTTGTTTATGTCTGCTGATCGCCAGCTGCT
ACGTGTCGCTCTCCCAGGCAGATGAGCACAATCACAAGTACAATGACCGG
GAGGAGGTGGTACTGTGGATGAACACGGTGGGCCCGTACCACAATCGGCA
GGAGACGTACGCGTACTTCTCTCTCCCCTTTTGCAGTGGCCAGAAGTCCT
CGATATCGCACTACCACGAGACGCTGAGCGAGGCGCTGCAAGGAGTCGAG
CTAGAGTTCAGTGGCTACGAGATGGAGTTCAAGAGCGACGCCCCCAAATC
GGTCATCTGCATGGTCACCTTGCAGGAGGAGAGCGCCAAGGCATTCACCT
ATGCCGTGAAGAACGAGTACTGGTACCAGATGTACATCGATGGACTGCCC
ATTTGGGGAAAAGTCGGTGAGCGCGACGAGCGCGATGGCAAGTACTATAT
CTTCACGCACAAGAAGTTCGACATCGGCTACAATGGCCAGCAAATCGTGG
ATATCACCCTGACCACCGAGGGCCGCGAGGAACTCAAGCCGGGATCCCAC
ATCAACTTCTCCTACGAGGTCAACTGGAAGCCCAGCAAGGTGGAGTTCAA
GAATCGATTCGACAAGTACCTGGATCCCAACTTCTTCCAGCACAGGATCC
ACTGGTTCAGCATCTTCAACAGCTTCATGATGGTCATCTTCCTGGTGGGT
CTGGTGTCCATGATTCTGATGCGAACTCTGCGCAAGGATTATGCTCGGTA
CAGTAAGGACGAGGAAATCGACGACATGGAGCGAGATCTTGGTGATGAAT
ACGGCTGGAAGCAGGTGCATGGCGATGTCTTCCGTTCTCCGCCCAACACA
CTGCTCTTCTCGGCGTTGGTGGGCGCTGGATACCAACTGATTTCGGTTGT
ATTCTGTGTGATCATGTTCGCCATAGTTGGTGAATTGTACACGGAACGCG
GCTCCATGCTGTCCACGGCTATATTTGTGTATGCCGCCACCTCACCAATC
AATGGATACTTTGGAGGATCGCTCTATGCCCGCCTGGGTGGACGCATGTG
GATCCGACAGATGCTGGTGTCCGCTTTTACAGTTCCAGTGGCTGTGTGCG
GCACGGCTTTCCTGATCAACTTCATTGCCATTGGATATCACGCGTCGAGA
GCCATTCCCTTCGGTACCATGGTGGCGGTCACTTGCATCTGCCTGTTTGT
CATCCTGCCCTTGACTCTGGTGGGTACTGTCGTGGGCCGCAATCTGGACG
GCCAACCAGACTTTCCATGCCGCGTCAACGCGGTGCCACGACCCATTCCC
GAAAAGAAGTGGTACATGGAGCCACTGATTATTGTGCTTCTTGGCGGTGT
CTTGCCCTTTGGATCCATCTTCATTGAGATGTACTTCATCTTCACCTCCT
TCTGGGCGTACAAGATCTACTACGTCTACGGCTTCATGTTGCTGGTTTTC
AGCATCCTGACTGTGGTCACCGTGTGCGTCACCATCGTGTGCACCTACTT
CCTGCTAAATGCCGAAGATTACCGATGGCAGTGGACGAGTTTCATGGCTG
CGGGCTCCACGTCGATTTACGTGTACGCCTATTCCTTCTATTACTTCTTC
TTTAAAACCAAAATGTTCGGTCTGTTCCAAACGGCCTTCTACTTTGGCTA
CATGGCACTCTTCAGCGGCGCCTTGGGCATTATCTGCGGCACCGTCGGCT
ATGTGGGCACGAATCTCTTCGTGCGCAAAATCTATTCCAATGTGAAAATA
GACTAAGAGCCCTGCGACTGCAAACCCACCCCCAGATCTGTATATCATCC
TAATCGATTAACAATTGTATTTATTGAGTAGAGTTTTAGTTCTGTTTCAC
AACTTTAGCTCCAGTTGGCTCTCCTCTTTTCGTCTCTTTGGGTTACCCAC
TTCTCATGTTGGTGTGAAAATGAATGCCAGTCCAATATATTCGCACCAAA
GATAAAAGATTCAGTTTAACGATGTATACGCAAACTACATATATCACCTA
AAAGGTTTACTTCGGAATTATAAGACTAGACGTTTCAAATGAGAAAATTT
GGGAAAACATTGTGAATTAAAAGCTCTTTCTGTTGCATTTACGTTTTGCT
AGTTTTAAGAGTCAATTAATCCTATACACTAATTTTTGGTTTTGTAATTT
CTACTGTTCCATAAAATAACATTTCTCTACTTACTTAAATTACTAAGAAG
CTTGCTTACACAAAATATTTGATATATTTCCGAAGATAACTTTTATGTCA
TATATGTGCGTATGTTACGTTGCATACGGTGTACATCGAGTATTTTATTT
GAATTGTTTGCCTAGAAAACTTATCAATCTATGCAACTGCAACAAAATGT
GACTTGAACTTGTTTGCGCCAATTAAGTTATGTACGATGCAAGAAATGTG
CTGATTAGCAATAGTCGATAATCTAATAATAAATTCAATATATAAAACCA
AAAAAAAAAAAA

RE48767.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10590-RA 2770 CG10590-RA 87..2744 1..2658 13290 100 Plus
CG10590.a 3081 CG10590.a 398..3055 1..2658 13290 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5594540..5595505 1811..846 4830 100 Minus
chr3L 24539361 chr3L 5593646..5594483 2649..1812 4175 99.9 Minus
chr3L 24539361 chr3L 5595622..5596181 846..287 2800 100 Minus
chr3L 24539361 chr3L 5596238..5596525 288..1 1440 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5601990..5602955 1811..846 4830 100 Minus
3L 28110227 3L 5601087..5601933 2658..1812 4235 100 Minus
3L 28110227 3L 5603072..5603631 846..287 2800 100 Minus
3L 28110227 3L 5603688..5603975 288..1 1440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5595090..5596055 1811..846 4830 100 Minus
3L 28103327 3L 5594187..5595033 2658..1812 4235 100 Minus
3L 28103327 3L 5596172..5596731 846..287 2800 100 Minus
3L 28103327 3L 5596788..5597075 288..1 1440 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:12:13 has no hits.

RE48767.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:13:18 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5593646..5594483 1812..2649 99 <- Minus
chr3L 5594540..5595504 847..1811 100 <- Minus
chr3L 5595622..5596179 289..846 100 <- Minus
chr3L 5596238..5596525 1..288 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:19:50 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..1779 178..1956 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:22 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..1779 178..1956 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:03 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..1779 178..1956 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:07 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..1779 178..1956 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:01:18 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..1779 178..1956 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:20 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..2649 1..2649 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:22 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..2649 1..2649 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:03 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 5..2653 1..2649 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:07 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 1..2649 1..2649 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:01:18 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
CG10590-RA 5..2653 1..2649 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:18 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5601096..5601933 1812..2649 100 <- Minus
3L 5601990..5602954 847..1811 100 <- Minus
3L 5603072..5603629 289..846 100 <- Minus
3L 5603688..5603975 1..288 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:18 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5601096..5601933 1812..2649 100 <- Minus
3L 5601990..5602954 847..1811 100 <- Minus
3L 5603072..5603629 289..846 100 <- Minus
3L 5603688..5603975 1..288 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:18 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5601096..5601933 1812..2649 100 <- Minus
3L 5601990..5602954 847..1811 100 <- Minus
3L 5603072..5603629 289..846 100 <- Minus
3L 5603688..5603975 1..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:03 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5596788..5597075 1..288 100   Minus
arm_3L 5594196..5595033 1812..2649 100 <- Minus
arm_3L 5595090..5596054 847..1811 100 <- Minus
arm_3L 5596172..5596729 289..846 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:09 Download gff for RE48767.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5594196..5595033 1812..2649 100 <- Minus
3L 5595090..5596054 847..1811 100 <- Minus
3L 5596172..5596729 289..846 100 <- Minus
3L 5596788..5597075 1..288 100   Minus

RE48767.pep Sequence

Translation from 177 to 1955

> RE48767.pep
MGSSATQTTVPFRAICLCLLIASCYVSLSQADEHNHKYNDREEVVLWMNT
VGPYHNRQETYAYFSLPFCSGQKSSISHYHETLSEALQGVELEFSGYEME
FKSDAPKSVICMVTLQEESAKAFTYAVKNEYWYQMYIDGLPIWGKVGERD
ERDGKYYIFTHKKFDIGYNGQQIVDITLTTEGREELKPGSHINFSYEVNW
KPSKVEFKNRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRT
LRKDYARYSKDEEIDDMERDLGDEYGWKQVHGDVFRSPPNTLLFSALVGA
GYQLISVVFCVIMFAIVGELYTERGSMLSTAIFVYAATSPINGYFGGSLY
ARLGGRMWIRQMLVSAFTVPVAVCGTAFLINFIAIGYHASRAIPFGTMVA
VTCICLFVILPLTLVGTVVGRNLDGQPDFPCRVNAVPRPIPEKKWYMEPL
IIVLLGGVLPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFSILTVVTVC
VTIVCTYFLLNAEDYRWQWTSFMAAGSTSIYVYAYSFYYFFFKTKMFGLF
QTAFYFGYMALFSGALGIICGTVGYVGTNLFVRKIYSNVKID*

RE48767.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10453-PA 599 GF10453-PA 9..599 3..592 2879 95.1 Plus
Dana\GF23049-PA 625 GF23049-PA 50..625 58..592 900 34.9 Plus
Dana\GF14550-PA 663 GF14550-PA 50..663 41..592 738 30.2 Plus
Dana\GF20175-PA 138 GF20175-PA 43..138 480..592 294 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14121-PA 592 GG14121-PA 1..592 1..592 3153 99 Plus
Dere\GG23874-PA 630 GG23874-PA 55..630 58..592 903 35.1 Plus
Dere\GG21552-PA 659 GG21552-PA 46..659 41..592 730 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15015-PA 585 GH15015-PA 9..585 15..592 2751 93.4 Plus
Dgri\GH11109-PA 626 GH11109-PA 51..626 58..592 897 35.3 Plus
Dgri\GH10847-PA 659 GH10847-PA 45..659 41..592 728 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
TM9SF3-PA 592 CG10590-PA 1..592 1..592 3156 100 Plus
TM9SF4-PB 630 CG7364-PB 55..630 58..592 925 35.1 Plus
TM9SF4-PA 630 CG7364-PA 55..630 58..592 925 35.1 Plus
TM9SF2-PB 659 CG9318-PB 46..659 41..592 767 29.6 Plus
TM9SF2-PA 659 CG9318-PA 46..659 41..592 767 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13177-PA 585 GI13177-PA 3..585 9..592 2772 93.5 Plus
Dmoj\GI18231-PA 626 GI18231-PA 51..626 58..592 919 36 Plus
Dmoj\GI19598-PA 657 GI19598-PA 44..657 41..592 743 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11985-PA 590 GL11985-PA 1..590 1..592 2616 86.7 Plus
Dper\GL21220-PA 634 GL21220-PA 59..634 58..592 897 34.9 Plus
Dper\GL19593-PA 624 GL19593-PA 48..624 41..592 593 27.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10420-PA 591 GA10420-PA 1..591 1..592 2925 94.1 Plus
Dpse\GA20298-PA 634 GA20298-PA 59..634 58..592 897 34.9 Plus
Dpse\GA21696-PA 661 GA21696-PA 48..661 41..592 736 30 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13907-PA 592 GM13907-PA 1..592 1..592 3169 99.7 Plus
Dsec\GM15157-PA 630 GM15157-PA 55..630 58..592 906 35.1 Plus
Dsec\GM23311-PA 659 GM23311-PA 46..659 41..592 747 29.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13184-PA 645 GD13184-PA 1..645 1..592 3103 91.5 Plus
Dsim\GD23917-PA 623 GD23917-PA 55..623 58..592 866 34.6 Plus
Dsim\GD21683-PA 659 GD21683-PA 46..659 41..592 746 29.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11952-PA 585 GJ11952-PA 3..585 9..592 2804 93.7 Plus
Dvir\GJ18139-PA 626 GJ18139-PA 51..626 58..592 903 35.3 Plus
Dvir\GJ17423-PA 657 GJ17423-PA 43..657 41..592 735 29.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16877-PA 586 GK16877-PA 4..586 9..592 2726 91.8 Plus
Dwil\GK18190-PA 630 GK18190-PA 55..630 58..592 895 35.1 Plus
Dwil\GK14911-PA 665 GK14911-PA 53..665 41..592 722 29.4 Plus
Dwil\GK15232-PA 666 GK15232-PA 70..633 61..589 328 24.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20545-PA 593 GE20545-PA 1..593 1..592 3141 99 Plus
Dyak\GE18677-PA 630 GE18677-PA 55..630 58..592 901 34.8 Plus
Dyak\GE13546-PA 659 GE13546-PA 46..659 41..592 730 29.6 Plus

RE48767.hyp Sequence

Translation from 177 to 1955

> RE48767.hyp
MGSSATQTTVPFRAICLCLLIASCYVSLSQADEHNHKYNDREEVVLWMNT
VGPYHNRQETYAYFSLPFCSGQKSSISHYHETLSEALQGVELEFSGYEME
FKSDAPKSVICMVTLQEESAKAFTYAVKNEYWYQMYIDGLPIWGKVGERD
ERDGKYYIFTHKKFDIGYNGQQIVDITLTTEGREELKPGSHINFSYEVNW
KPSKVEFKNRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRT
LRKDYARYSKDEEIDDMERDLGDEYGWKQVHGDVFRSPPNTLLFSALVGA
GYQLISVVFCVIMFAIVGELYTERGSMLSTAIFVYAATSPINGYFGGSLY
ARLGGRMWIRQMLVSAFTVPVAVCGTAFLINFIAIGYHASRAIPFGTMVA
VTCICLFVILPLTLVGTVVGRNLDGQPDFPCRVNAVPRPIPEKKWYMEPL
IIVLLGGVLPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFSILTVVTVC
VTIVCTYFLLNAEDYRWQWTSFMAAGSTSIYVYAYSFYYFFFKTKMFGLF
QTAFYFGYMALFSGALGIICGTVGYVGTNLFVRKIYSNVKID*

RE48767.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10590-PA 592 CG10590-PA 1..592 1..592 3156 100 Plus
TM9SF4-PB 630 CG7364-PB 55..630 58..592 925 35.1 Plus
TM9SF4-PA 630 CG7364-PA 55..630 58..592 925 35.1 Plus
CG9318-PB 659 CG9318-PB 46..659 41..592 767 29.6 Plus
CG9318-PA 659 CG9318-PA 46..659 41..592 767 29.6 Plus