BDGP Sequence Production Resources |
Search the DGRC for RE48767
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 487 |
Well: | 67 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10590-RA |
Protein status: | RE48767.pep: gold |
Preliminary Size: | 1863 |
Sequenced Size: | 2662 |
Gene | Date | Evidence |
---|---|---|
CG10590 | 2001-12-17 | Blastp of sequenced clone |
CG10590 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10590 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10590 | 2008-04-29 | Release 5.5 accounting |
CG10590 | 2008-08-15 | Release 5.9 accounting |
CG10590 | 2008-12-18 | 5.12 accounting |
2662 bp (2662 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071401
> RE48767.complete ATCGATGTTTCTCCACCTCTAAGATACAACCCTAAAATATTTCTGCTGTC GGCAAATCTGAGTGTTTGCCACAAAACTGTTTGAAAACGCAATCCCAGCG AGGGCAACCGAATCAGGCCGGCAGAGCGAGGTCACCAGGAAGACGCGCAA ACGAGGTCACCACCTGCACAAGACACAATGGGCAGCAGCGCCACGCAAAC CACGGTGCCGTTCCGTGCAATTTGTTTATGTCTGCTGATCGCCAGCTGCT ACGTGTCGCTCTCCCAGGCAGATGAGCACAATCACAAGTACAATGACCGG GAGGAGGTGGTACTGTGGATGAACACGGTGGGCCCGTACCACAATCGGCA GGAGACGTACGCGTACTTCTCTCTCCCCTTTTGCAGTGGCCAGAAGTCCT CGATATCGCACTACCACGAGACGCTGAGCGAGGCGCTGCAAGGAGTCGAG CTAGAGTTCAGTGGCTACGAGATGGAGTTCAAGAGCGACGCCCCCAAATC GGTCATCTGCATGGTCACCTTGCAGGAGGAGAGCGCCAAGGCATTCACCT ATGCCGTGAAGAACGAGTACTGGTACCAGATGTACATCGATGGACTGCCC ATTTGGGGAAAAGTCGGTGAGCGCGACGAGCGCGATGGCAAGTACTATAT CTTCACGCACAAGAAGTTCGACATCGGCTACAATGGCCAGCAAATCGTGG ATATCACCCTGACCACCGAGGGCCGCGAGGAACTCAAGCCGGGATCCCAC ATCAACTTCTCCTACGAGGTCAACTGGAAGCCCAGCAAGGTGGAGTTCAA GAATCGATTCGACAAGTACCTGGATCCCAACTTCTTCCAGCACAGGATCC ACTGGTTCAGCATCTTCAACAGCTTCATGATGGTCATCTTCCTGGTGGGT CTGGTGTCCATGATTCTGATGCGAACTCTGCGCAAGGATTATGCTCGGTA CAGTAAGGACGAGGAAATCGACGACATGGAGCGAGATCTTGGTGATGAAT ACGGCTGGAAGCAGGTGCATGGCGATGTCTTCCGTTCTCCGCCCAACACA CTGCTCTTCTCGGCGTTGGTGGGCGCTGGATACCAACTGATTTCGGTTGT ATTCTGTGTGATCATGTTCGCCATAGTTGGTGAATTGTACACGGAACGCG GCTCCATGCTGTCCACGGCTATATTTGTGTATGCCGCCACCTCACCAATC AATGGATACTTTGGAGGATCGCTCTATGCCCGCCTGGGTGGACGCATGTG GATCCGACAGATGCTGGTGTCCGCTTTTACAGTTCCAGTGGCTGTGTGCG GCACGGCTTTCCTGATCAACTTCATTGCCATTGGATATCACGCGTCGAGA GCCATTCCCTTCGGTACCATGGTGGCGGTCACTTGCATCTGCCTGTTTGT CATCCTGCCCTTGACTCTGGTGGGTACTGTCGTGGGCCGCAATCTGGACG GCCAACCAGACTTTCCATGCCGCGTCAACGCGGTGCCACGACCCATTCCC GAAAAGAAGTGGTACATGGAGCCACTGATTATTGTGCTTCTTGGCGGTGT CTTGCCCTTTGGATCCATCTTCATTGAGATGTACTTCATCTTCACCTCCT TCTGGGCGTACAAGATCTACTACGTCTACGGCTTCATGTTGCTGGTTTTC AGCATCCTGACTGTGGTCACCGTGTGCGTCACCATCGTGTGCACCTACTT CCTGCTAAATGCCGAAGATTACCGATGGCAGTGGACGAGTTTCATGGCTG CGGGCTCCACGTCGATTTACGTGTACGCCTATTCCTTCTATTACTTCTTC TTTAAAACCAAAATGTTCGGTCTGTTCCAAACGGCCTTCTACTTTGGCTA CATGGCACTCTTCAGCGGCGCCTTGGGCATTATCTGCGGCACCGTCGGCT ATGTGGGCACGAATCTCTTCGTGCGCAAAATCTATTCCAATGTGAAAATA GACTAAGAGCCCTGCGACTGCAAACCCACCCCCAGATCTGTATATCATCC TAATCGATTAACAATTGTATTTATTGAGTAGAGTTTTAGTTCTGTTTCAC AACTTTAGCTCCAGTTGGCTCTCCTCTTTTCGTCTCTTTGGGTTACCCAC TTCTCATGTTGGTGTGAAAATGAATGCCAGTCCAATATATTCGCACCAAA GATAAAAGATTCAGTTTAACGATGTATACGCAAACTACATATATCACCTA AAAGGTTTACTTCGGAATTATAAGACTAGACGTTTCAAATGAGAAAATTT GGGAAAACATTGTGAATTAAAAGCTCTTTCTGTTGCATTTACGTTTTGCT AGTTTTAAGAGTCAATTAATCCTATACACTAATTTTTGGTTTTGTAATTT CTACTGTTCCATAAAATAACATTTCTCTACTTACTTAAATTACTAAGAAG CTTGCTTACACAAAATATTTGATATATTTCCGAAGATAACTTTTATGTCA TATATGTGCGTATGTTACGTTGCATACGGTGTACATCGAGTATTTTATTT GAATTGTTTGCCTAGAAAACTTATCAATCTATGCAACTGCAACAAAATGT GACTTGAACTTGTTTGCGCCAATTAAGTTATGTACGATGCAAGAAATGTG CTGATTAGCAATAGTCGATAATCTAATAATAAATTCAATATATAAAACCA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 5594540..5595505 | 1811..846 | 4830 | 100 | Minus |
chr3L | 24539361 | chr3L | 5593646..5594483 | 2649..1812 | 4175 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 5595622..5596181 | 846..287 | 2800 | 100 | Minus |
chr3L | 24539361 | chr3L | 5596238..5596525 | 288..1 | 1440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 5601990..5602955 | 1811..846 | 4830 | 100 | Minus |
3L | 28110227 | 3L | 5601087..5601933 | 2658..1812 | 4235 | 100 | Minus |
3L | 28110227 | 3L | 5603072..5603631 | 846..287 | 2800 | 100 | Minus |
3L | 28110227 | 3L | 5603688..5603975 | 288..1 | 1440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 5595090..5596055 | 1811..846 | 4830 | 100 | Minus |
3L | 28103327 | 3L | 5594187..5595033 | 2658..1812 | 4235 | 100 | Minus |
3L | 28103327 | 3L | 5596172..5596731 | 846..287 | 2800 | 100 | Minus |
3L | 28103327 | 3L | 5596788..5597075 | 288..1 | 1440 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5593646..5594483 | 1812..2649 | 99 | <- | Minus |
chr3L | 5594540..5595504 | 847..1811 | 100 | <- | Minus |
chr3L | 5595622..5596179 | 289..846 | 100 | <- | Minus |
chr3L | 5596238..5596525 | 1..288 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..1779 | 178..1956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..1779 | 178..1956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..1779 | 178..1956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..1779 | 178..1956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..1779 | 178..1956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..2649 | 1..2649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..2649 | 1..2649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 5..2653 | 1..2649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 1..2649 | 1..2649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10590-RA | 5..2653 | 1..2649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5601096..5601933 | 1812..2649 | 100 | <- | Minus |
3L | 5601990..5602954 | 847..1811 | 100 | <- | Minus |
3L | 5603072..5603629 | 289..846 | 100 | <- | Minus |
3L | 5603688..5603975 | 1..288 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5601096..5601933 | 1812..2649 | 100 | <- | Minus |
3L | 5601990..5602954 | 847..1811 | 100 | <- | Minus |
3L | 5603072..5603629 | 289..846 | 100 | <- | Minus |
3L | 5603688..5603975 | 1..288 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5601096..5601933 | 1812..2649 | 100 | <- | Minus |
3L | 5601990..5602954 | 847..1811 | 100 | <- | Minus |
3L | 5603072..5603629 | 289..846 | 100 | <- | Minus |
3L | 5603688..5603975 | 1..288 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5596788..5597075 | 1..288 | 100 | Minus | |
arm_3L | 5594196..5595033 | 1812..2649 | 100 | <- | Minus |
arm_3L | 5595090..5596054 | 847..1811 | 100 | <- | Minus |
arm_3L | 5596172..5596729 | 289..846 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5594196..5595033 | 1812..2649 | 100 | <- | Minus |
3L | 5595090..5596054 | 847..1811 | 100 | <- | Minus |
3L | 5596172..5596729 | 289..846 | 100 | <- | Minus |
3L | 5596788..5597075 | 1..288 | 100 | Minus |
Translation from 177 to 1955
> RE48767.pep MGSSATQTTVPFRAICLCLLIASCYVSLSQADEHNHKYNDREEVVLWMNT VGPYHNRQETYAYFSLPFCSGQKSSISHYHETLSEALQGVELEFSGYEME FKSDAPKSVICMVTLQEESAKAFTYAVKNEYWYQMYIDGLPIWGKVGERD ERDGKYYIFTHKKFDIGYNGQQIVDITLTTEGREELKPGSHINFSYEVNW KPSKVEFKNRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRT LRKDYARYSKDEEIDDMERDLGDEYGWKQVHGDVFRSPPNTLLFSALVGA GYQLISVVFCVIMFAIVGELYTERGSMLSTAIFVYAATSPINGYFGGSLY ARLGGRMWIRQMLVSAFTVPVAVCGTAFLINFIAIGYHASRAIPFGTMVA VTCICLFVILPLTLVGTVVGRNLDGQPDFPCRVNAVPRPIPEKKWYMEPL IIVLLGGVLPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFSILTVVTVC VTIVCTYFLLNAEDYRWQWTSFMAAGSTSIYVYAYSFYYFFFKTKMFGLF QTAFYFGYMALFSGALGIICGTVGYVGTNLFVRKIYSNVKID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10453-PA | 599 | GF10453-PA | 9..599 | 3..592 | 2879 | 95.1 | Plus |
Dana\GF23049-PA | 625 | GF23049-PA | 50..625 | 58..592 | 900 | 34.9 | Plus |
Dana\GF14550-PA | 663 | GF14550-PA | 50..663 | 41..592 | 738 | 30.2 | Plus |
Dana\GF20175-PA | 138 | GF20175-PA | 43..138 | 480..592 | 294 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14121-PA | 592 | GG14121-PA | 1..592 | 1..592 | 3153 | 99 | Plus |
Dere\GG23874-PA | 630 | GG23874-PA | 55..630 | 58..592 | 903 | 35.1 | Plus |
Dere\GG21552-PA | 659 | GG21552-PA | 46..659 | 41..592 | 730 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15015-PA | 585 | GH15015-PA | 9..585 | 15..592 | 2751 | 93.4 | Plus |
Dgri\GH11109-PA | 626 | GH11109-PA | 51..626 | 58..592 | 897 | 35.3 | Plus |
Dgri\GH10847-PA | 659 | GH10847-PA | 45..659 | 41..592 | 728 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TM9SF3-PA | 592 | CG10590-PA | 1..592 | 1..592 | 3156 | 100 | Plus |
TM9SF4-PB | 630 | CG7364-PB | 55..630 | 58..592 | 925 | 35.1 | Plus |
TM9SF4-PA | 630 | CG7364-PA | 55..630 | 58..592 | 925 | 35.1 | Plus |
TM9SF2-PB | 659 | CG9318-PB | 46..659 | 41..592 | 767 | 29.6 | Plus |
TM9SF2-PA | 659 | CG9318-PA | 46..659 | 41..592 | 767 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13177-PA | 585 | GI13177-PA | 3..585 | 9..592 | 2772 | 93.5 | Plus |
Dmoj\GI18231-PA | 626 | GI18231-PA | 51..626 | 58..592 | 919 | 36 | Plus |
Dmoj\GI19598-PA | 657 | GI19598-PA | 44..657 | 41..592 | 743 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11985-PA | 590 | GL11985-PA | 1..590 | 1..592 | 2616 | 86.7 | Plus |
Dper\GL21220-PA | 634 | GL21220-PA | 59..634 | 58..592 | 897 | 34.9 | Plus |
Dper\GL19593-PA | 624 | GL19593-PA | 48..624 | 41..592 | 593 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10420-PA | 591 | GA10420-PA | 1..591 | 1..592 | 2925 | 94.1 | Plus |
Dpse\GA20298-PA | 634 | GA20298-PA | 59..634 | 58..592 | 897 | 34.9 | Plus |
Dpse\GA21696-PA | 661 | GA21696-PA | 48..661 | 41..592 | 736 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13907-PA | 592 | GM13907-PA | 1..592 | 1..592 | 3169 | 99.7 | Plus |
Dsec\GM15157-PA | 630 | GM15157-PA | 55..630 | 58..592 | 906 | 35.1 | Plus |
Dsec\GM23311-PA | 659 | GM23311-PA | 46..659 | 41..592 | 747 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13184-PA | 645 | GD13184-PA | 1..645 | 1..592 | 3103 | 91.5 | Plus |
Dsim\GD23917-PA | 623 | GD23917-PA | 55..623 | 58..592 | 866 | 34.6 | Plus |
Dsim\GD21683-PA | 659 | GD21683-PA | 46..659 | 41..592 | 746 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11952-PA | 585 | GJ11952-PA | 3..585 | 9..592 | 2804 | 93.7 | Plus |
Dvir\GJ18139-PA | 626 | GJ18139-PA | 51..626 | 58..592 | 903 | 35.3 | Plus |
Dvir\GJ17423-PA | 657 | GJ17423-PA | 43..657 | 41..592 | 735 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16877-PA | 586 | GK16877-PA | 4..586 | 9..592 | 2726 | 91.8 | Plus |
Dwil\GK18190-PA | 630 | GK18190-PA | 55..630 | 58..592 | 895 | 35.1 | Plus |
Dwil\GK14911-PA | 665 | GK14911-PA | 53..665 | 41..592 | 722 | 29.4 | Plus |
Dwil\GK15232-PA | 666 | GK15232-PA | 70..633 | 61..589 | 328 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20545-PA | 593 | GE20545-PA | 1..593 | 1..592 | 3141 | 99 | Plus |
Dyak\GE18677-PA | 630 | GE18677-PA | 55..630 | 58..592 | 901 | 34.8 | Plus |
Dyak\GE13546-PA | 659 | GE13546-PA | 46..659 | 41..592 | 730 | 29.6 | Plus |
Translation from 177 to 1955
> RE48767.hyp MGSSATQTTVPFRAICLCLLIASCYVSLSQADEHNHKYNDREEVVLWMNT VGPYHNRQETYAYFSLPFCSGQKSSISHYHETLSEALQGVELEFSGYEME FKSDAPKSVICMVTLQEESAKAFTYAVKNEYWYQMYIDGLPIWGKVGERD ERDGKYYIFTHKKFDIGYNGQQIVDITLTTEGREELKPGSHINFSYEVNW KPSKVEFKNRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRT LRKDYARYSKDEEIDDMERDLGDEYGWKQVHGDVFRSPPNTLLFSALVGA GYQLISVVFCVIMFAIVGELYTERGSMLSTAIFVYAATSPINGYFGGSLY ARLGGRMWIRQMLVSAFTVPVAVCGTAFLINFIAIGYHASRAIPFGTMVA VTCICLFVILPLTLVGTVVGRNLDGQPDFPCRVNAVPRPIPEKKWYMEPL IIVLLGGVLPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFSILTVVTVC VTIVCTYFLLNAEDYRWQWTSFMAAGSTSIYVYAYSFYYFFFKTKMFGLF QTAFYFGYMALFSGALGIICGTVGYVGTNLFVRKIYSNVKID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10590-PA | 592 | CG10590-PA | 1..592 | 1..592 | 3156 | 100 | Plus |
TM9SF4-PB | 630 | CG7364-PB | 55..630 | 58..592 | 925 | 35.1 | Plus |
TM9SF4-PA | 630 | CG7364-PA | 55..630 | 58..592 | 925 | 35.1 | Plus |
CG9318-PB | 659 | CG9318-PB | 46..659 | 41..592 | 767 | 29.6 | Plus |
CG9318-PA | 659 | CG9318-PA | 46..659 | 41..592 | 767 | 29.6 | Plus |