BDGP Sequence Production Resources |
Search the DGRC for RE49227
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 492 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14626-RA |
Protein status: | RE49227.pep: gold |
Preliminary Size: | 1041 |
Sequenced Size: | 1425 |
Gene | Date | Evidence |
---|---|---|
CG14626 | 2001-12-16 | Blastp of sequenced clone |
CG14626 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14626 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14626 | 2008-04-29 | Release 5.5 accounting |
CG14626 | 2008-08-15 | Release 5.9 accounting |
CG14626 | 2008-12-18 | 5.12 accounting |
1425 bp (1425 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071404
> RE49227.complete GGCAGTCGCCTCAGCGCTCGTCTCTCGCTCGGTTCGGTTTTAGTTTTTGG TTTCACTTCCCATTTGTCGACTTCATTTTCAGTTTTGACTGTTGGACATG GCTCGAGTTTAGTTTAGTGCTAACTTTGTTTTTTTTTTGGTGCACCTGAG TGTGTTACGTGCGAACTGGTGAATGTTGTCTGTGCTGGTTCCCTCCAAGG AGTGATCATCGTCATTTAGCCGGATCAAGGCGGTCAAGCAGCCCCATCAT CAACATTGCCACAAGTTATTATCGGAGGAGACCATAAACGGATTTCTGTA ATCATGGTGTTGCCCCAACTGATTCTTCTATTCGTCGTTTTGATCAACGA TGTCCACGGCATCCTGCCACCTTCTGGCTACGACGACGATACATCGCCAC TGCCACTCCGCCTTGACGACTTGGAACGGGACCACCTGCAGCAGTTGGAC CTCAATCGGCCGCCACTTCTGCCCAATCACTACGAATGGCACCCGGATGT GGCCGCCAGTCTGCCGCCCAGCTACATTCAGGAGGCCGCCCAACGGGATC GGGAGCGCGAGCGTGATCTCGAGCGTAATCGGCGACTGGAGGAGCTGCGT CAGCTGCAGCAGCAGCATCAGCAGCTGAGTTCGGGCTACGCCTTTCCTGC CCACCTGCCAGGTGTGCTCTATGTTGGTCCCACAGCTGCCACGCCCACTC CCACGCCCTCGGCAGCGACGACGAAAGTGGCCTCTTCTGCAACTCCATTT GCCAATCCCATAGTTCCCTACGACTTGGAACTGGGGCTGCGCCCCATTCC ATATGTAACCAGTAATGCCCTGCCCCTTCCAGTGCCACGCCCCCTTCCGC CACCCCATGCCCGAGCGCCGTTCATCTACGGATTTACCGCCCAGGGCAAC CGAGCAACCAGCCACAAGCTGCCGGGTCAGCCCCTGCTGGTCCAGCAGTC CAAACAGTTCGCCTACGCTCCCGCTCAGCCCCCCCAGCGGCACTACGCGA ATGGGCCACGGGTTCCGATACCGTATCCCCCAAGCTTTGTGAGCTTCACC ACTCGGAGACCGGGTTCGGAGCGTATCAGGCCATTCCGGCCATCGCAACC GGATCCCACGCCCGATTTGTTTGCTGGACGCTCCTCGAAATCATTGATCG ACTCGTACATTCCCAGCTGGGAGGTACTGCGCCTGATCAGACAGCACCAG CCGCAGCAAGGATTCACGCCCATCGCACGCCAAACACTCGCGTATCCCGC TCCGGCGCACTTGAGGCTCTACAAGCGAGATTCCCAGGAGGACCGGTCGA GAATCGTCAAGGAAACCTTACCCGAACCTTAGAGTTCGAGTTCGGGCTTA GCGTACGATTTAATTTTTTGTTTCTTAATTTACCTACAAATACGAATATT TATTGCCGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14626-RA | 1500 | CG14626-RA | 2..1414 | 2..1414 | 7065 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 1081827..1082561 | 675..1409 | 3675 | 100 | Plus |
chrX | 22417052 | chrX | 1080734..1081102 | 306..674 | 1830 | 99.7 | Plus |
chrX | 22417052 | chrX | 1078759..1079066 | 2..309 | 1540 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 572..624 | 121 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2384 | 590..627 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2373 | 578..625 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6817 | 541..627 | 111 | 58.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1078758..1079063 | 1..306 | 99 | -> | Plus |
chrX | 1080735..1081102 | 307..674 | 99 | -> | Plus |
chrX | 1081827..1082561 | 675..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 1..1029 | 304..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 1..1029 | 304..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 1..1029 | 304..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 1..1029 | 304..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 1..1029 | 304..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 2..1409 | 2..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 2..1409 | 2..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 5..1413 | 1..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 2..1409 | 2..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14626-RA | 5..1413 | 1..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1184782..1185087 | 1..306 | 99 | -> | Plus |
X | 1186759..1187126 | 307..674 | 100 | -> | Plus |
X | 1187851..1188585 | 675..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1184782..1185087 | 1..306 | 99 | -> | Plus |
X | 1186759..1187126 | 307..674 | 100 | -> | Plus |
X | 1187851..1188585 | 675..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1184782..1185087 | 1..306 | 99 | -> | Plus |
X | 1186759..1187126 | 307..674 | 100 | -> | Plus |
X | 1187851..1188585 | 675..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1078815..1079120 | 1..306 | 99 | -> | Plus |
arm_X | 1080792..1081159 | 307..674 | 100 | -> | Plus |
arm_X | 1081884..1082618 | 675..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1192880..1193185 | 1..306 | 99 | -> | Plus |
X | 1194857..1195224 | 307..674 | 100 | -> | Plus |
X | 1195949..1196683 | 675..1409 | 100 | Plus |
Translation from 303 to 1331
> RE49227.hyp MVLPQLILLFVVLINDVHGILPPSGYDDDTSPLPLRLDDLERDHLQQLDL NRPPLLPNHYEWHPDVAASLPPSYIQEAAQRDRERERDLERNRRLEELRQ LQQQHQQLSSGYAFPAHLPGVLYVGPTAATPTPTPSAATTKVASSATPFA NPIVPYDLELGLRPIPYVTSNALPLPVPRPLPPPHARAPFIYGFTAQGNR ATSHKLPGQPLLVQQSKQFAYAPAQPPQRHYANGPRVPIPYPPSFVSFTT RRPGSERIRPFRPSQPDPTPDLFAGRSSKSLIDSYIPSWEVLRLIRQHQP QQGFTPIARQTLAYPAPAHLRLYKRDSQEDRSRIVKETLPEP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14626-PA | 342 | CG14626-PA | 1..342 | 1..342 | 1818 | 100 | Plus |
Translation from 303 to 1331
> RE49227.pep MVLPQLILLFVVLINDVHGILPPSGYDDDTSPLPLRLDDLERDHLQQLDL NRPPLLPNHYEWHPDVAASLPPSYIQEAAQRDRERERDLERNRRLEELRQ LQQQHQQLSSGYAFPAHLPGVLYVGPTAATPTPTPSAATTKVASSATPFA NPIVPYDLELGLRPIPYVTSNALPLPVPRPLPPPHARAPFIYGFTAQGNR ATSHKLPGQPLLVQQSKQFAYAPAQPPQRHYANGPRVPIPYPPSFVSFTT RRPGSERIRPFRPSQPDPTPDLFAGRSSKSLIDSYIPSWEVLRLIRQHQP QQGFTPIARQTLAYPAPAHLRLYKRDSQEDRSRIVKETLPEP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22139-PA | 349 | GF22139-PA | 14..342 | 16..339 | 771 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12833-PA | 354 | GG12833-PA | 1..346 | 1..342 | 1274 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12001-PA | 375 | GH12001-PA | 22..368 | 6..339 | 577 | 50.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14626-PA | 342 | CG14626-PA | 1..342 | 1..342 | 1818 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15628-PA | 363 | GI15628-PA | 24..356 | 22..339 | 598 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14233-PA | 352 | GL14233-PA | 11..348 | 7..339 | 708 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13125-PA | 389 | GA13125-PA | 48..385 | 7..339 | 706 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19118-PA | 426 | GM19118-PA | 80..416 | 2..342 | 1386 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24708-PA | 351 | GD24708-PA | 1..341 | 2..342 | 1428 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16339-PA | 350 | GJ16339-PA | 23..343 | 22..339 | 656 | 53.3 | Plus |
Dvir\GJ15224-PA | 456 | GJ15224-PA | 227..449 | 132..339 | 426 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16361-PA | 400 | GK16361-PA | 63..390 | 22..341 | 659 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16667-PA | 345 | GE16667-PA | 1..339 | 1..342 | 1192 | 85.6 | Plus |