Clone RE49227 Report

Search the DGRC for RE49227

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:492
Well:27
Vector:pFlc-1
Associated Gene/TranscriptCG14626-RA
Protein status:RE49227.pep: gold
Preliminary Size:1041
Sequenced Size:1425

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14626 2001-12-16 Blastp of sequenced clone
CG14626 2002-01-01 Sim4 clustering to Release 2
CG14626 2003-01-01 Sim4 clustering to Release 3
CG14626 2008-04-29 Release 5.5 accounting
CG14626 2008-08-15 Release 5.9 accounting
CG14626 2008-12-18 5.12 accounting

Clone Sequence Records

RE49227.complete Sequence

1425 bp (1425 high quality bases) assembled on 2001-12-16

GenBank Submission: AY071404

> RE49227.complete
GGCAGTCGCCTCAGCGCTCGTCTCTCGCTCGGTTCGGTTTTAGTTTTTGG
TTTCACTTCCCATTTGTCGACTTCATTTTCAGTTTTGACTGTTGGACATG
GCTCGAGTTTAGTTTAGTGCTAACTTTGTTTTTTTTTTGGTGCACCTGAG
TGTGTTACGTGCGAACTGGTGAATGTTGTCTGTGCTGGTTCCCTCCAAGG
AGTGATCATCGTCATTTAGCCGGATCAAGGCGGTCAAGCAGCCCCATCAT
CAACATTGCCACAAGTTATTATCGGAGGAGACCATAAACGGATTTCTGTA
ATCATGGTGTTGCCCCAACTGATTCTTCTATTCGTCGTTTTGATCAACGA
TGTCCACGGCATCCTGCCACCTTCTGGCTACGACGACGATACATCGCCAC
TGCCACTCCGCCTTGACGACTTGGAACGGGACCACCTGCAGCAGTTGGAC
CTCAATCGGCCGCCACTTCTGCCCAATCACTACGAATGGCACCCGGATGT
GGCCGCCAGTCTGCCGCCCAGCTACATTCAGGAGGCCGCCCAACGGGATC
GGGAGCGCGAGCGTGATCTCGAGCGTAATCGGCGACTGGAGGAGCTGCGT
CAGCTGCAGCAGCAGCATCAGCAGCTGAGTTCGGGCTACGCCTTTCCTGC
CCACCTGCCAGGTGTGCTCTATGTTGGTCCCACAGCTGCCACGCCCACTC
CCACGCCCTCGGCAGCGACGACGAAAGTGGCCTCTTCTGCAACTCCATTT
GCCAATCCCATAGTTCCCTACGACTTGGAACTGGGGCTGCGCCCCATTCC
ATATGTAACCAGTAATGCCCTGCCCCTTCCAGTGCCACGCCCCCTTCCGC
CACCCCATGCCCGAGCGCCGTTCATCTACGGATTTACCGCCCAGGGCAAC
CGAGCAACCAGCCACAAGCTGCCGGGTCAGCCCCTGCTGGTCCAGCAGTC
CAAACAGTTCGCCTACGCTCCCGCTCAGCCCCCCCAGCGGCACTACGCGA
ATGGGCCACGGGTTCCGATACCGTATCCCCCAAGCTTTGTGAGCTTCACC
ACTCGGAGACCGGGTTCGGAGCGTATCAGGCCATTCCGGCCATCGCAACC
GGATCCCACGCCCGATTTGTTTGCTGGACGCTCCTCGAAATCATTGATCG
ACTCGTACATTCCCAGCTGGGAGGTACTGCGCCTGATCAGACAGCACCAG
CCGCAGCAAGGATTCACGCCCATCGCACGCCAAACACTCGCGTATCCCGC
TCCGGCGCACTTGAGGCTCTACAAGCGAGATTCCCAGGAGGACCGGTCGA
GAATCGTCAAGGAAACCTTACCCGAACCTTAGAGTTCGAGTTCGGGCTTA
GCGTACGATTTAATTTTTTGTTTCTTAATTTACCTACAAATACGAATATT
TATTGCCGCAAAAAAAAAAAAAAAA

RE49227.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14626-RA 1500 CG14626-RA 2..1414 2..1414 7065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1081827..1082561 675..1409 3675 100 Plus
chrX 22417052 chrX 1080734..1081102 306..674 1830 99.7 Plus
chrX 22417052 chrX 1078759..1079066 2..309 1540 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1187851..1188590 675..1414 3700 100 Plus
X 23542271 X 1186758..1187126 306..674 1845 100 Plus
X 23542271 X 1184783..1185090 2..309 1540 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1195949..1196688 675..1414 3700 100 Plus
X 23527363 X 1194856..1195224 306..674 1845 100 Plus
X 23527363 X 1192881..1193188 2..309 1540 100 Plus
Blast to na_te.dros performed 2019-03-16 14:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6865 572..624 121 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2384 590..627 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2373 578..625 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6817 541..627 111 58.6 Plus

RE49227.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:09:40 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1078758..1079063 1..306 99 -> Plus
chrX 1080735..1081102 307..674 99 -> Plus
chrX 1081827..1082561 675..1409 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:01 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 1..1029 304..1332 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:37 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 1..1029 304..1332 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:48:37 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 1..1029 304..1332 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:10 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 1..1029 304..1332 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:23:48 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 1..1029 304..1332 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:02 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 2..1409 2..1409 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:37 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 2..1409 2..1409 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:48:37 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 5..1413 1..1409 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:10 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 2..1409 2..1409 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:48 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
CG14626-RA 5..1413 1..1409 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:09:40 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1184782..1185087 1..306 99 -> Plus
X 1186759..1187126 307..674 100 -> Plus
X 1187851..1188585 675..1409 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:09:40 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1184782..1185087 1..306 99 -> Plus
X 1186759..1187126 307..674 100 -> Plus
X 1187851..1188585 675..1409 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:09:40 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1184782..1185087 1..306 99 -> Plus
X 1186759..1187126 307..674 100 -> Plus
X 1187851..1188585 675..1409 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:48:37 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1078815..1079120 1..306 99 -> Plus
arm_X 1080792..1081159 307..674 100 -> Plus
arm_X 1081884..1082618 675..1409 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:51 Download gff for RE49227.complete
Subject Subject Range Query Range Percent Splice Strand
X 1192880..1193185 1..306 99 -> Plus
X 1194857..1195224 307..674 100 -> Plus
X 1195949..1196683 675..1409 100   Plus

RE49227.hyp Sequence

Translation from 303 to 1331

> RE49227.hyp
MVLPQLILLFVVLINDVHGILPPSGYDDDTSPLPLRLDDLERDHLQQLDL
NRPPLLPNHYEWHPDVAASLPPSYIQEAAQRDRERERDLERNRRLEELRQ
LQQQHQQLSSGYAFPAHLPGVLYVGPTAATPTPTPSAATTKVASSATPFA
NPIVPYDLELGLRPIPYVTSNALPLPVPRPLPPPHARAPFIYGFTAQGNR
ATSHKLPGQPLLVQQSKQFAYAPAQPPQRHYANGPRVPIPYPPSFVSFTT
RRPGSERIRPFRPSQPDPTPDLFAGRSSKSLIDSYIPSWEVLRLIRQHQP
QQGFTPIARQTLAYPAPAHLRLYKRDSQEDRSRIVKETLPEP*

RE49227.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14626-PA 342 CG14626-PA 1..342 1..342 1818 100 Plus

RE49227.pep Sequence

Translation from 303 to 1331

> RE49227.pep
MVLPQLILLFVVLINDVHGILPPSGYDDDTSPLPLRLDDLERDHLQQLDL
NRPPLLPNHYEWHPDVAASLPPSYIQEAAQRDRERERDLERNRRLEELRQ
LQQQHQQLSSGYAFPAHLPGVLYVGPTAATPTPTPSAATTKVASSATPFA
NPIVPYDLELGLRPIPYVTSNALPLPVPRPLPPPHARAPFIYGFTAQGNR
ATSHKLPGQPLLVQQSKQFAYAPAQPPQRHYANGPRVPIPYPPSFVSFTT
RRPGSERIRPFRPSQPDPTPDLFAGRSSKSLIDSYIPSWEVLRLIRQHQP
QQGFTPIARQTLAYPAPAHLRLYKRDSQEDRSRIVKETLPEP*

RE49227.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22139-PA 349 GF22139-PA 14..342 16..339 771 66.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12833-PA 354 GG12833-PA 1..346 1..342 1274 86.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12001-PA 375 GH12001-PA 22..368 6..339 577 50.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14626-PA 342 CG14626-PA 1..342 1..342 1818 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15628-PA 363 GI15628-PA 24..356 22..339 598 50.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14233-PA 352 GL14233-PA 11..348 7..339 708 58.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13125-PA 389 GA13125-PA 48..385 7..339 706 58 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19118-PA 426 GM19118-PA 80..416 2..342 1386 91.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24708-PA 351 GD24708-PA 1..341 2..342 1428 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16339-PA 350 GJ16339-PA 23..343 22..339 656 53.3 Plus
Dvir\GJ15224-PA 456 GJ15224-PA 227..449 132..339 426 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16361-PA 400 GK16361-PA 63..390 22..341 659 52.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16667-PA 345 GE16667-PA 1..339 1..342 1192 85.6 Plus