BDGP Sequence Production Resources |
Search the DGRC for RE49394
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 493 |
Well: | 94 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(2)35Bd-RA |
Protein status: | RE49394.pep: gold |
Sequenced Size: | 1780 |
Gene | Date | Evidence |
---|---|---|
CG3688 | 2001-12-17 | Blastp of sequenced clone |
CG3688 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3688 | 2003-01-01 | Sim4 clustering to Release 3 |
l(2)35Bd | 2008-04-29 | Release 5.5 accounting |
l(2)35Bd | 2008-08-15 | Release 5.9 accounting |
l(2)35Bd | 2008-12-18 | 5.12 accounting |
1780 bp (1780 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071407
> RE49394.complete TCATTCCTAACTGACCCGATAACTTCGATAGGCAACGACTGTTGGTCATC CGGCAAAACAGAAAATTAATAGAGACTATGAGTCTTAATTACGAACAAAA CGCGGCAGACGAGCAGTTCGCCCGCGCACACAAAGCAGTCAGCCTGTCGG ACGACGAGGAGAGCGAGGGCCAAGCGGAGACCACGTCTGCACCAAATCAG GAGCCGCATGTTAGTAAATCACCGAGGGAGTACTACGATGAGCCTGGCGG GAAGGGCAATGGAAGTGGAGCAGATGATCAGGATGAGCCGGAAACGGAGG CTGCCAGCGGAGCGGCCAACACACATGTGGTGGCACACCACTACAACGAG CTGAAGGAGGCGGGCCGCAAGGATCGTCAGAAGTCAAAGATATTCTTCAT GAGGAACTTTAACAACTGGATCAAGAGCCAGCTGATCAACGAGTATATGT CGCAGATTAAGCAGAACAAACGCATGGGTGATGCTCTCAGAGTTCTGGAC ATGTGCTGCGGCAAGGGCGGTGACCTTCTCAAATGGGAGAAGGCTGCCAT CTCCCACCTCATCTGCACCGACATCGCTGAGGTGTCGGTGGAGCAGTGCC AGCGGCGATATCAGGACATCCTGCAGCGATCGGAGAAGTCGAAATTTGCG AATAAGTTTACCGCGGAGTTTTTTGCCTGCGACTCCACATTAGTGCGCCT GCGGGAACGGTATAAGGATCCTTCGCTTCAGCTGAATCTCGTGTCCTGTC AGTTTGCCTTTCACTATTGCTTCGAGTCAATGGCGCAGGCAGATTGCATG ATGCGGAATGCAGCCGAGTGTCTGAAACCCGGTGGCTTCTTCATAGCCAC AATGCCGGATGCCTACGAGATCATCCGCAGGCTAAGGGCAGCCGGTCCAG ATGCCCGGCGTTTCGGTAACGATGTGTACAGCATTGAATTTGACTGCGAA ACGGATCCTTTGCCGCTTTTCGGAGCCAAGTATCAGTTTCACTTGGAGGG CGTTGTCGATTGCCCCGAGTTCCTAGTGCATTTTCCCACGCTGGTCAAGC TGGGCAGAAAATACGGTCTGCAGCTATTGAAGCGCTCCACATTTGCGGAT TACTACAAGGAAAATCTGCACCACGGGCGGCATCTTCTGCAGCGAATGTC CGGCTTGGAGTCGGTGCAGCCACAGCGCTGCGAGAATGATGAAGAGTTCG CCCATGTGAGTAACTTTCAGGGAGCACAGCGAAGCAGGTCGGTGGGAACC CTCTCGAAATCCGAATGGGAAGCAGCAACTCTTTATTTGGTTTGTGCCTT TAAGAAATGCAAAAACACCTGGGACACCAATGGCAAACCATTGTTCGAAT TTGACGACTGATTATTGCCAAAAACATTCACGTTATAGACTATTATTCTG TACCCGTGGCTTAGCACTTTTAAAGTTTATACTCGAAAGCATGAACAGAT TATTAATTTCAGAAAAGATTAGCTCCGTAGGTTACAATTCGTAAAACTAA GGGTATGTTTGTTTGTGTTCATAGGTTTCAATTCAAATTTTATTGTCCAG TCTAGGAGATATTTAACAAATTTACGAGAAAGCCACCAACCATCAAGCTA CGAAATTTCAATGTAAATCGAGAATGTCATTTTGCTAATAAAAATTTTTA ATTTAGAAAATTTTATTTACTATTGAGTCCGTACTATAGTTAGAAGAGAC GTATTTATAAATATTACAGAATATTTCGTAAGCTAAATAATGAAAACTAA TAAAATGACTTCAATGGAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)35Bd-RA | 1801 | l(2)35Bd-RA | 27..1798 | 1..1772 | 8860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2563..2685 | 1714..1593 | 117 | 56.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 15008734..15010011 | 1..1278 | 99 | -> | Plus |
chr2L | 15010069..15010557 | 1279..1767 | 93 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1284 | 78..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1284 | 78..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1284 | 78..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1284 | 78..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1284 | 78..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1767 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1767 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 3..1769 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 1..1767 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)35Bd-RA | 3..1769 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15009941..15011218 | 1..1278 | 100 | -> | Plus |
2L | 15011276..15011764 | 1279..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15009941..15011218 | 1..1278 | 100 | -> | Plus |
2L | 15011276..15011764 | 1279..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15009941..15011218 | 1..1278 | 100 | -> | Plus |
2L | 15011276..15011764 | 1279..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 15009941..15011218 | 1..1278 | 100 | -> | Plus |
arm_2L | 15011276..15011764 | 1279..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15009941..15011218 | 1..1278 | 100 | -> | Plus |
2L | 15011276..15011764 | 1279..1767 | 100 | Plus |
Translation from 77 to 1360
> RE49394.pep MSLNYEQNAADEQFARAHKAVSLSDDEESEGQAETTSAPNQEPHVSKSPR EYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNELKEAGRKDR QKSKIFFMRNFNNWIKSQLINEYMSQIKQNKRMGDALRVLDMCCGKGGDL LKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEFFA CDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLK PGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIEFDCETDPLPLFGA KYQFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLHHG RHLLQRMSGLESVQPQRCENDEEFAHVSNFQGAQRSRSVGTLSKSEWEAA TLYLVCAFKKCKNTWDTNGKPLFEFDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14902-PA | 426 | GF14902-PA | 1..426 | 1..427 | 1880 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25137-PA | 427 | GG25137-PA | 1..427 | 1..427 | 2165 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10912-PA | 412 | GH10912-PA | 1..412 | 1..427 | 1686 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rnmt-PA | 427 | CG3688-PA | 1..427 | 1..427 | 2280 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13226-PA | 420 | GI13226-PA | 1..420 | 1..427 | 1671 | 72.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26022-PA | 408 | GL26022-PA | 1..408 | 1..427 | 1811 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17612-PA | 408 | GA17612-PA | 1..408 | 1..427 | 1796 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15862-PA | 427 | GM15862-PA | 1..427 | 1..427 | 2271 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23987-PA | 427 | GD23987-PA | 1..427 | 1..427 | 2267 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11848-PA | 421 | GJ11848-PA | 1..421 | 1..427 | 1739 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18308-PA | 418 | GK18308-PA | 1..418 | 1..427 | 1699 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19056-PA | 427 | GE19056-PA | 1..427 | 1..427 | 2164 | 94.6 | Plus |
Translation from 77 to 1360
> RE49394.hyp MSLNYEQNAADEQFARAHKAVSLSDDEESEGQAETTSAPNQEPHVSKSPR EYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNELKEAGRKDR QKSKIFFMRNFNNWIKSQLINEYMSQIKQNKRMGDALRVLDMCCGKGGDL LKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEFFA CDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLK PGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIEFDCETDPLPLFGA KYQFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLHHG RHLLQRMSGLESVQPQRCENDEEFAHVSNFQGAQRSRSVGTLSKSEWEAA TLYLVCAFKKCKNTWDTNGKPLFEFDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)35Bd-PA | 427 | CG3688-PA | 1..427 | 1..427 | 2280 | 100 | Plus |