Clone RE49394 Report

Search the DGRC for RE49394

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:493
Well:94
Vector:pFlc-1
Associated Gene/Transcriptl(2)35Bd-RA
Protein status:RE49394.pep: gold
Sequenced Size:1780

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3688 2001-12-17 Blastp of sequenced clone
CG3688 2002-01-01 Sim4 clustering to Release 2
CG3688 2003-01-01 Sim4 clustering to Release 3
l(2)35Bd 2008-04-29 Release 5.5 accounting
l(2)35Bd 2008-08-15 Release 5.9 accounting
l(2)35Bd 2008-12-18 5.12 accounting

Clone Sequence Records

RE49394.complete Sequence

1780 bp (1780 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071407

> RE49394.complete
TCATTCCTAACTGACCCGATAACTTCGATAGGCAACGACTGTTGGTCATC
CGGCAAAACAGAAAATTAATAGAGACTATGAGTCTTAATTACGAACAAAA
CGCGGCAGACGAGCAGTTCGCCCGCGCACACAAAGCAGTCAGCCTGTCGG
ACGACGAGGAGAGCGAGGGCCAAGCGGAGACCACGTCTGCACCAAATCAG
GAGCCGCATGTTAGTAAATCACCGAGGGAGTACTACGATGAGCCTGGCGG
GAAGGGCAATGGAAGTGGAGCAGATGATCAGGATGAGCCGGAAACGGAGG
CTGCCAGCGGAGCGGCCAACACACATGTGGTGGCACACCACTACAACGAG
CTGAAGGAGGCGGGCCGCAAGGATCGTCAGAAGTCAAAGATATTCTTCAT
GAGGAACTTTAACAACTGGATCAAGAGCCAGCTGATCAACGAGTATATGT
CGCAGATTAAGCAGAACAAACGCATGGGTGATGCTCTCAGAGTTCTGGAC
ATGTGCTGCGGCAAGGGCGGTGACCTTCTCAAATGGGAGAAGGCTGCCAT
CTCCCACCTCATCTGCACCGACATCGCTGAGGTGTCGGTGGAGCAGTGCC
AGCGGCGATATCAGGACATCCTGCAGCGATCGGAGAAGTCGAAATTTGCG
AATAAGTTTACCGCGGAGTTTTTTGCCTGCGACTCCACATTAGTGCGCCT
GCGGGAACGGTATAAGGATCCTTCGCTTCAGCTGAATCTCGTGTCCTGTC
AGTTTGCCTTTCACTATTGCTTCGAGTCAATGGCGCAGGCAGATTGCATG
ATGCGGAATGCAGCCGAGTGTCTGAAACCCGGTGGCTTCTTCATAGCCAC
AATGCCGGATGCCTACGAGATCATCCGCAGGCTAAGGGCAGCCGGTCCAG
ATGCCCGGCGTTTCGGTAACGATGTGTACAGCATTGAATTTGACTGCGAA
ACGGATCCTTTGCCGCTTTTCGGAGCCAAGTATCAGTTTCACTTGGAGGG
CGTTGTCGATTGCCCCGAGTTCCTAGTGCATTTTCCCACGCTGGTCAAGC
TGGGCAGAAAATACGGTCTGCAGCTATTGAAGCGCTCCACATTTGCGGAT
TACTACAAGGAAAATCTGCACCACGGGCGGCATCTTCTGCAGCGAATGTC
CGGCTTGGAGTCGGTGCAGCCACAGCGCTGCGAGAATGATGAAGAGTTCG
CCCATGTGAGTAACTTTCAGGGAGCACAGCGAAGCAGGTCGGTGGGAACC
CTCTCGAAATCCGAATGGGAAGCAGCAACTCTTTATTTGGTTTGTGCCTT
TAAGAAATGCAAAAACACCTGGGACACCAATGGCAAACCATTGTTCGAAT
TTGACGACTGATTATTGCCAAAAACATTCACGTTATAGACTATTATTCTG
TACCCGTGGCTTAGCACTTTTAAAGTTTATACTCGAAAGCATGAACAGAT
TATTAATTTCAGAAAAGATTAGCTCCGTAGGTTACAATTCGTAAAACTAA
GGGTATGTTTGTTTGTGTTCATAGGTTTCAATTCAAATTTTATTGTCCAG
TCTAGGAGATATTTAACAAATTTACGAGAAAGCCACCAACCATCAAGCTA
CGAAATTTCAATGTAAATCGAGAATGTCATTTTGCTAATAAAAATTTTTA
ATTTAGAAAATTTTATTTACTATTGAGTCCGTACTATAGTTAGAAGAGAC
GTATTTATAAATATTACAGAATATTTCGTAAGCTAAATAATGAAAACTAA
TAAAATGACTTCAATGGAAAAAAAAAAAAA

RE49394.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bd-RA 1801 l(2)35Bd-RA 27..1798 1..1772 8860 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15008734..15010011 1..1278 6375 99.9 Plus
chr2L 23010047 chr2L 15010069..15010557 1279..1767 2445 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15009941..15011218 1..1278 6390 100 Plus
2L 23513712 2L 15011276..15011769 1279..1772 2470 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15009941..15011218 1..1278 6390 100 Plus
2L 23513712 2L 15011276..15011769 1279..1772 2470 100 Plus
Blast to na_te.dros performed 2019-03-16 07:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2563..2685 1714..1593 117 56.1 Minus

RE49394.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:32:49 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15008734..15010011 1..1278 99 -> Plus
chr2L 15010069..15010557 1279..1767 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:04 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1284 78..1361 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:34 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1284 78..1361 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:32:16 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1284 78..1361 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:18 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1284 78..1361 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:02 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1284 78..1361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:25:12 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1767 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:34 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1767 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:16 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 3..1769 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:19 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 1..1767 1..1767 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:02 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bd-RA 3..1769 1..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:32:49 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15009941..15011218 1..1278 100 -> Plus
2L 15011276..15011764 1279..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:32:49 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15009941..15011218 1..1278 100 -> Plus
2L 15011276..15011764 1279..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:32:49 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15009941..15011218 1..1278 100 -> Plus
2L 15011276..15011764 1279..1767 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:16 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15009941..15011218 1..1278 100 -> Plus
arm_2L 15011276..15011764 1279..1767 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:29 Download gff for RE49394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15009941..15011218 1..1278 100 -> Plus
2L 15011276..15011764 1279..1767 100   Plus

RE49394.pep Sequence

Translation from 77 to 1360

> RE49394.pep
MSLNYEQNAADEQFARAHKAVSLSDDEESEGQAETTSAPNQEPHVSKSPR
EYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNELKEAGRKDR
QKSKIFFMRNFNNWIKSQLINEYMSQIKQNKRMGDALRVLDMCCGKGGDL
LKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEFFA
CDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLK
PGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIEFDCETDPLPLFGA
KYQFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLHHG
RHLLQRMSGLESVQPQRCENDEEFAHVSNFQGAQRSRSVGTLSKSEWEAA
TLYLVCAFKKCKNTWDTNGKPLFEFDD*

RE49394.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14902-PA 426 GF14902-PA 1..426 1..427 1880 82.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25137-PA 427 GG25137-PA 1..427 1..427 2165 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10912-PA 412 GH10912-PA 1..412 1..427 1686 74.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rnmt-PA 427 CG3688-PA 1..427 1..427 2280 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13226-PA 420 GI13226-PA 1..420 1..427 1671 72.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26022-PA 408 GL26022-PA 1..408 1..427 1811 78.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17612-PA 408 GA17612-PA 1..408 1..427 1796 77.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15862-PA 427 GM15862-PA 1..427 1..427 2271 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23987-PA 427 GD23987-PA 1..427 1..427 2267 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11848-PA 421 GJ11848-PA 1..421 1..427 1739 74.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18308-PA 418 GK18308-PA 1..418 1..427 1699 73.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19056-PA 427 GE19056-PA 1..427 1..427 2164 94.6 Plus

RE49394.hyp Sequence

Translation from 77 to 1360

> RE49394.hyp
MSLNYEQNAADEQFARAHKAVSLSDDEESEGQAETTSAPNQEPHVSKSPR
EYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNELKEAGRKDR
QKSKIFFMRNFNNWIKSQLINEYMSQIKQNKRMGDALRVLDMCCGKGGDL
LKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEFFA
CDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLK
PGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIEFDCETDPLPLFGA
KYQFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLHHG
RHLLQRMSGLESVQPQRCENDEEFAHVSNFQGAQRSRSVGTLSKSEWEAA
TLYLVCAFKKCKNTWDTNGKPLFEFDD*

RE49394.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bd-PA 427 CG3688-PA 1..427 1..427 2280 100 Plus