Clone RE49431 Report

Search the DGRC for RE49431

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:494
Well:31
Vector:pFlc-1
Associated Gene/TranscriptCG7328-RA
Protein status:RE49431.pep: gold
Preliminary Size:921
Sequenced Size:1311

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7328 2001-12-14 Blastp of sequenced clone
CG7328 2002-01-01 Sim4 clustering to Release 2
CG7328 2003-01-01 Sim4 clustering to Release 3
CG7328 2008-04-29 Release 5.5 accounting
CG7328 2008-08-15 Release 5.9 accounting
CG7328 2008-12-18 5.12 accounting

Clone Sequence Records

RE49431.complete Sequence

1311 bp (1311 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071409

> RE49431.complete
ATTGGCTATAGCGGAGCTCCAAAGTTAATATTAATAATTTTAAGTTAAGC
AAGGAAATGACAGATTTTCAGTAAAAAAATAATTTAGAATATATGAAATA
TTGATTATACTTACTTTACATGTAGAAAGTACCAACATCGAAACACTAAC
TTTAACACCAGAACGACCTCATTAATGAATAGAAAGTAAATAATTTTTGA
GTGAACAAAATACCAGATTAAGATGACCCAAGTGAAATCTGTACTTTGCG
TGGGTTGCACGGTGATTGACTTCGTGACCATCAATGGGAGCTATCCTATG
GAGGACACCGATCGGCGATGCCTGGATGGGTTCTGGCAACGTGGCGGAAA
CGCCTCTAATGTGAGTACTGTGCTCCGGGTTCTTGGATGCAAGGTGGACT
TCTTTGGAATGCTCAGCAGGTCGGATGGATTCCGAGTGCTTCTCGACGAT
CTCTCGAAGCGGGAAATCGGCACGAATGACTGTCCCTTCACGGACAGGGA
TCCGCCATTCTCCTCTGTGATCCTGGCTCAGGATTCCGGCACCCGCACCA
TTATCCACTGCAATAAGGACTACCCGCAGACCACCTATGAGGACTTCAGC
AAGATAAACCTTTCGCAGTATGGATGGGTACACTTCGAGGCTCGCAACAC
GCCGCACACCTTAAAGATGATGCAAAGCATCCGGGAGTACAACCAAAGGA
CCGGACAAGGCATCATTATCTCGTTGGACTTCGAAACGAGGTATGAACAA
AACCAGGAATTGTGTGCGCCCTGCGATTTTGTGGTCTTCTCCAAGGAGCT
GGCTGGTCAGTTGGGTTGGAAGACACCGCGGCAGTCGTGCGAGGAGTTGG
CCTCCAAAATTCCCGAAGGTGGTCCAAAGCCTGTCTTCATTTGTCCCTGG
GGAAGCGCCGGAGCTGGAGCTATGGATGCTAATGGAAACTACTATGAAAT
GTCGTCCTATAAACAGGACAAGGTAGTTGACACGCTGGGAGCCGGGGACA
GTTTCATGGCGGGATTCATCTACGCCACCCTCAAGGCTCGTCGAAGTCTA
GCGGAGGCTGTTGACTTTGCCAACCGAGTTGCCAGTCACAAAATCACTGG
ATTCGGCTACGAACACATTTCCCAGCTTAGCTTAACCAAGTAAATATTGG
TTTAATTCTAGCTTAGATTAAGTCACATTGAAGGAATTTATTAAGATAAA
AGCCTGGCAACAAAAATAGCAAATTGCATTAAATATTATATTGATTGTTA
AACAGAATAAACTAATACGTGCATCACGCTCAATTATGAATGCTTTAAAA
AAAAAAAAAAA

RE49431.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7328-RA 1300 CG7328-RA 1..1300 1..1300 6500 100 Plus
CG7328.b 1244 CG7328.b 361..1244 417..1300 4420 100 Plus
CG7328.c 1241 CG7328.c 361..1241 420..1300 4405 100 Plus
CG7328.c 1241 CG7328.c 1..362 1..362 1810 100 Plus
CG7328.b 1244 CG7328.b 1..360 1..360 1800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20128491..20129786 1296..1 6450 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20139206..20140505 1300..1 6500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20132306..20133605 1300..1 6500 100 Minus
Blast to na_te.dros performed 2019-03-16 13:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6701..6799 125..26 145 64.4 Minus

RE49431.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:42:25 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20128491..20129786 1..1296 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:10 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..921 223..1143 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:55 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..921 223..1143 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:10:52 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..921 223..1143 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:07 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..921 223..1143 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:07 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..921 223..1143 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:40:58 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..1296 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:55 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..1296 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:10:52 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 103..1398 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:07 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 1..1296 1..1296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:07 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
CG7328-RA 103..1398 1..1296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:25 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20139210..20140505 1..1296 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:25 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20139210..20140505 1..1296 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:25 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20139210..20140505 1..1296 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:10:52 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20132310..20133605 1..1296 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:22 Download gff for RE49431.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20132310..20133605 1..1296 100   Minus

RE49431.pep Sequence

Translation from 222 to 1142

> RE49431.pep
MTQVKSVLCVGCTVIDFVTINGSYPMEDTDRRCLDGFWQRGGNASNVSTV
LRVLGCKVDFFGMLSRSDGFRVLLDDLSKREIGTNDCPFTDRDPPFSSVI
LAQDSGTRTIIHCNKDYPQTTYEDFSKINLSQYGWVHFEARNTPHTLKMM
QSIREYNQRTGQGIIISLDFETRYEQNQELCAPCDFVVFSKELAGQLGWK
TPRQSCEELASKIPEGGPKPVFICPWGSAGAGAMDANGNYYEMSSYKQDK
VVDTLGAGDSFMAGFIYATLKARRSLAEAVDFANRVASHKITGFGYEHIS
QLSLTK*

RE49431.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24486-PA 305 GF24486-PA 1..302 1..302 1163 68.5 Plus
Dana\GF24552-PA 375 GF24552-PA 7..314 1..302 634 41.9 Plus
Dana\GF25264-PA 327 GF25264-PA 18..323 5..304 609 41.2 Plus
Dana\GF24487-PA 373 GF24487-PA 34..358 5..297 349 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13341-PA 306 GG13341-PA 1..305 1..305 1574 94.1 Plus
Dere\GG15503-PA 322 GG15503-PA 15..318 5..304 652 42.1 Plus
Dere\GG13921-PA 381 GG13921-PA 7..316 1..304 625 41 Plus
Dere\GG13342-PA 375 GG13342-PA 31..360 2..297 361 27.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15118-PA 307 GH15118-PA 1..298 4..302 1020 61.7 Plus
Dgri\GH16650-PA 379 GH16650-PA 7..318 1..303 627 40.1 Plus
Dgri\GH14844-PA 322 GH14844-PA 15..316 5..302 617 37.7 Plus
Dgri\GH15119-PA 374 GH15119-PA 33..361 7..299 325 24.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7328-PA 306 CG7328-PA 1..306 1..306 1632 100 Plus
CG7551-PB 322 CG7551-PB 15..318 5..304 660 42.1 Plus
CG12289-PA 378 CG12289-PA 10..316 4..304 633 42 Plus
CG7335-PA 372 CG7335-PA 31..357 5..297 348 27.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13769-PA 310 GI13769-PA 1..301 1..302 1062 64 Plus
Dmoj\GI13697-PA 379 GI13697-PA 7..314 1..304 630 39 Plus
Dmoj\GI11611-PA 424 GI11611-PA 5..312 1..304 626 39 Plus
Dmoj\GI13699-PA 322 GI13699-PA 15..316 5..302 560 37.7 Plus
Dmoj\GI13771-PA 371 GI13771-PA 33..358 7..299 382 27 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25057-PA 310 GL25057-PA 8..309 5..304 1188 73.2 Plus
Dper\GL22794-PA 302 GL22794-PA 1..296 15..302 589 39.5 Plus
Dper\GL22827-PA 192 GL22827-PA 10..188 4..180 405 43.6 Plus
Dper\GL25058-PA 371 GL25058-PA 31..356 5..297 347 27 Plus
Dper\GL22825-PA 219 GL22825-PA 10..137 4..131 312 44.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20264-PA 310 GA20264-PA 8..309 5..304 1182 72.5 Plus
Dpse\GA23880-PA 394 GA23880-PA 10..317 4..305 712 43.8 Plus
Dpse\GA20433-PA 327 GA20433-PA 16..321 5..302 621 40.2 Plus
Dpse\GA20271-PA 371 GA20271-PA 31..356 5..297 353 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22247-PA 306 GM22247-PA 1..306 1..306 1613 97.1 Plus
Dsec\GM25272-PA 322 GM25272-PA 15..318 5..304 675 42.1 Plus
Dsec\GM24754-PA 378 GM24754-PA 7..316 1..304 643 42 Plus
Dsec\GM22248-PA 372 GM22248-PA 31..357 5..297 358 27.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12218-PA 306 GD12218-PA 1..306 1..306 1618 97.7 Plus
Dsim\GD14306-PA 322 GD14306-PA 15..318 5..304 675 41.8 Plus
Dsim\GD12805-PA 378 GD12805-PA 7..316 1..304 639 41.6 Plus
Dsim\GD12219-PA 183 GD12219-PA 31..169 5..142 232 33.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13759-PA 310 GJ13759-PA 1..301 1..302 1070 64.4 Plus
Dvir\GJ14039-PA 322 GJ14039-PA 15..319 5..305 677 41.6 Plus
Dvir\GJ11289-PA 420 GJ11289-PA 7..313 1..303 668 42 Plus
Dvir\GJ13760-PA 370 GJ13760-PA 33..355 7..297 375 26.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17250-PA 308 GK17250-PA 1..306 1..303 1126 67.6 Plus
Dwil\GK17169-PA 418 GK17169-PA 7..316 1..304 831 49.4 Plus
Dwil\GK19276-PA 327 GK19276-PA 15..324 5..305 709 44.2 Plus
Dwil\GK17251-PA 698 GK17251-PA 31..360 5..292 361 27.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22430-PA 306 GE22430-PA 1..306 1..306 1540 92.2 Plus
Dyak\GE21811-PA 322 GE21811-PA 15..318 5..304 663 42.8 Plus
Dyak\GE23229-PA 228 GE23229-PA 91..228 169..306 641 85.5 Plus
Dyak\GE20217-PA 380 GE20217-PA 7..316 1..304 638 41.6 Plus
Dyak\GE23229-PA 228 GE23229-PA 1..98 1..98 498 93.9 Plus
Dyak\GE22431-PA 375 GE22431-PA 34..360 5..297 361 27.2 Plus

RE49431.hyp Sequence

Translation from 222 to 1142

> RE49431.hyp
MTQVKSVLCVGCTVIDFVTINGSYPMEDTDRRCLDGFWQRGGNASNVSTV
LRVLGCKVDFFGMLSRSDGFRVLLDDLSKREIGTNDCPFTDRDPPFSSVI
LAQDSGTRTIIHCNKDYPQTTYEDFSKINLSQYGWVHFEARNTPHTLKMM
QSIREYNQRTGQGIIISLDFETRYEQNQELCAPCDFVVFSKELAGQLGWK
TPRQSCEELASKIPEGGPKPVFICPWGSAGAGAMDANGNYYEMSSYKQDK
VVDTLGAGDSFMAGFIYATLKARRSLAEAVDFANRVASHKITGFGYEHIS
QLSLTK*

RE49431.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7328-PA 306 CG7328-PA 1..306 1..306 1632 100 Plus
CG7551-PB 322 CG7551-PB 15..318 5..304 660 42.1 Plus
CG12289-PA 378 CG12289-PA 10..316 4..304 633 42 Plus
CG7335-PA 372 CG7335-PA 31..357 5..297 348 27.5 Plus