Clone RE49550 Report

Search the DGRC for RE49550

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:495
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG6568-RA
Protein status:RE49550.pep: gold
Preliminary Size:1353
Sequenced Size:1827

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6568 2002-01-01 Sim4 clustering to Release 2
CG6568 2002-06-10 Blastp of sequenced clone
CG6568 2003-01-01 Sim4 clustering to Release 3
CG6568 2008-04-29 Release 5.5 accounting
CG6568 2008-08-15 Release 5.9 accounting
CG6568 2008-12-18 5.12 accounting

Clone Sequence Records

RE49550.complete Sequence

1827 bp (1827 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121689

> RE49550.complete
AGTTATAGAATTATTTTTGGCCAAACCAGAGTAACTCATTTCGCTCTTGG
ATTGAAGATGTTTTTAAGGCCGCTTTAATGGCGTTGACAATTACAAAATT
TCGAACTTCGAGGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTGA
GCCCCAAAATACCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAAA
TCGGAGCCGGGAAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTCT
TAACAAAATACCAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACAA
CAAAGATGACTGGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTCA
ACAGGTGCAGTGGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTCA
GACTAGTCCGAGTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGGA
AGGACACTCAAAGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACACA
ATCATCAAAGCAACCACAAGACCTTCACAAACAGCGCCTTTGACACCAAA
CTCAGCGGCTGTCACGCCAAGCACGCCGAGCAGTAGCAGGAATTCCACTC
AGTCCACACCAACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGCGC
CAAGCTGTGTTCATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATGCG
AAATATGACACTTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGGTG
TTGCGCCACAGCACCTGTCACTGCTGAAACGCCATATCTGCCGCAATGCT
AATGTCACCCACTTGGACTGTTGCTTGACTCTAAGGAAACTCAAACAAAA
CGAGCACTTCGCCCTGTTGGCCGAGCACTTTGAGCTGAGCGAATCAGATG
TCGAGGACACATTTAAGCGCACCCTTATCAAGCTGGCCCGTTACCTCCGT
CCACTGATTCGTTGGCCAGATGCACGGCATCACAACGAGCGCTTCAAACA
TACCCCACTGAACTACCGAGCCAACCTGTTGCATGTACGCTCGTTGATCG
AGTGTGTGGAAACGGACGTGCCGATAGATCTGGGATTGGGCAGCGGCAGC
TATAAGTTCATATTGTGCATCAATACAAATGGCATCATCAGCTATGTGTC
TAGCGCCTTTCCTGGTAGTTGCGATGATCTTCAATTGTTTGAGGCCAGCA
GATTTCGGGATGTCATTCCCAATTACCTAACACTATGCGCGGAACCAGGC
AAAGCAGTACGCCGTGCTCGCAGGTCGGGCTTCGGAGATCCTCACGACTC
AGCGGATGAGGATGAGGCGGCGGCGGAACCAAAGCGATCACTTACCAAAT
TCGAGGCACAGCGTTTGAGTGGCCAGCTAGCAAGCCAGCAATCCCTATCC
GTTGTAGACGGAGCACTGACTTCCAAGCGGGCTCCAGCGATTCAACTACC
CACATTCAACGCACAAGAACCCGCCTGTAGAGCCCAAATGAGAGATATGA
TAGATTATTTAAGGGAATTCCGCATGCTGGATAATTCGGCTATTAAGCAA
AAGTCATTGCTGGGTTATCTTGATGAAATGATCGTGGTGGCTGCGGGTCT
ATGCAACCTTAAGCGCCAAGAGTTGGAATCTTAAATAAGAAGTGCCATCC
GCGAAGGTCTGTTTAAAGGCCAACCAGATGTTATTGTCCTAGTTATTTTA
AGAATTTAATTTAATGTATTGTTAATGCAATGTAGAAACTGACTATTAAC
AAGTACGATTAAAAGGGTATATTTTAAAGTATTTCAAAGAATAAACACTA
CGTGGTCATCCAAAAAAAAAAAAAAAA

RE49550.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-RA 1814 CG6568-RA 1..1813 1..1813 9050 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13293092..13293857 1132..367 3785 99.6 Minus
chr2R 21145070 chr2R 13292362..13293040 1809..1131 3395 100 Minus
chr2R 21145070 chr2R 13293931..13294113 366..184 915 100 Minus
chr2R 21145070 chr2R 13294297..13294481 185..1 910 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:59:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17406036..17406801 1132..367 3830 100 Minus
2R 25286936 2R 17405302..17405984 1813..1131 3400 99.9 Minus
2R 25286936 2R 17407241..17407425 185..1 925 100 Minus
2R 25286936 2R 17406875..17407057 366..184 915 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17407235..17408000 1132..367 3830 100 Minus
2R 25260384 2R 17406501..17407183 1813..1131 3400 99.8 Minus
2R 25260384 2R 17408440..17408624 185..1 925 100 Minus
2R 25260384 2R 17408074..17408256 366..184 915 100 Minus
Blast to na_te.dros performed 2019-03-16 02:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 2000..2073 277..350 145 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2930..3006 288..361 144 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2377..2446 290..359 143 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1479..1587 252..358 142 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6817 290..360 137 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6790 290..354 134 70.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6032..6094 294..359 134 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6835 290..360 130 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1071..1141 290..360 130 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2420..2484 288..352 127 66.2 Plus
TART-C 11124 TART-C TARTC 11124bp 7487..7544 294..354 127 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2405..2510 255..360 125 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2395 290..353 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2419 290..359 116 62.9 Plus

RE49550.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:16:21 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13294297..13294481 1..185 99   Minus
chr2R 13293931..13294111 186..366 100 <- Minus
chr2R 13292360..13293039 1132..1811 99 <- Minus
chr2R 13293093..13293857 367..1131 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:15 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1557 78..1634 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:52 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1557 78..1634 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:18:04 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1557 78..1634 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:16:20 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1557 78..1634 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:02:42 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1557 78..1634 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:58 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1811 1..1811 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:52 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1811 1..1811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:18:04 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 3..1813 1..1811 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:16:20 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 1..1811 1..1811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:02:42 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 3..1813 1..1811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:21 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17405304..17405983 1132..1811 99 <- Minus
2R 17406037..17406801 367..1131 100 <- Minus
2R 17406875..17407055 186..366 100 <- Minus
2R 17407241..17407425 1..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:21 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17405304..17405983 1132..1811 99 <- Minus
2R 17406037..17406801 367..1131 100 <- Minus
2R 17406875..17407055 186..366 100 <- Minus
2R 17407241..17407425 1..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:21 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17405304..17405983 1132..1811 99 <- Minus
2R 17406037..17406801 367..1131 100 <- Minus
2R 17406875..17407055 186..366 100 <- Minus
2R 17407241..17407425 1..185 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:18:04 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13292809..13293488 1132..1811 99 <- Minus
arm_2R 13293542..13294306 367..1131 100 <- Minus
arm_2R 13294380..13294560 186..366 100 <- Minus
arm_2R 13294746..13294930 1..185 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:37 Download gff for RE49550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17406503..17407182 1132..1811 99 <- Minus
2R 17407236..17408000 367..1131 100 <- Minus
2R 17408074..17408254 186..366 100 <- Minus
2R 17408440..17408624 1..185 100   Minus

RE49550.pep Sequence

Translation from 77 to 1633

> RE49550.pep
MALTITKFRTSRGMVVAVQPTVVLSPKIPDSQDNEKKPFSKSEPGNATVR
VNAGGIVLNKIPAIIRPSMKRAATTKMTGATAAGATTTTSSTGAVGYPVL
KTPKYVVQTSPSGSSGHQLQMLARKDTQSLGVAINSLPPNTIIKATTRPS
QTAPLTPNSAAVTPSTPSSSRNSTQSTPTVVPDARVSSAVRQAVFIKREL
PQPQRSMRNMTLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCL
TLRKLKQNEHFALLAEHFELSESDVEDTFKRTLIKLARYLRPLIRWPDAR
HHNERFKHTPLNYRANLLHVRSLIECVETDVPIDLGLGSGSYKFILCINT
NGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPGKAVRRARRS
GFGDPHDSADEDEAAAEPKRSLTKFEAQRLSGQLASQQSLSVVDGALTSK
RAPAIQLPTFNAQEPACRAQMRDMIDYLREFRMLDNSAIKQKSLLGYLDE
MIVVAAGLCNLKRQELES*

RE49550.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13411-PA 457 GF13411-PA 42..454 101..515 1514 70.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22203-PA 521 GG22203-PA 1..521 1..518 2259 86.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20875-PA 466 GH20875-PA 1..466 1..514 1318 54.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Camp-PA 518 CG6568-PA 1..518 1..518 2632 100 Plus
Camp-PB 450 CG6568-PB 1..450 69..518 2294 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20986-PA 481 GI20986-PA 1..481 1..514 1280 53.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10256-PA 463 GL10256-PA 2..463 36..518 1405 59.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19690-PA 463 GA19690-PA 2..463 36..518 1456 60.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19989-PA 513 GM19989-PA 1..513 1..518 2373 89.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25484-PA 520 GD25484-PA 1..520 1..518 2426 90.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20706-PA 485 GJ20706-PA 1..485 1..514 1314 53.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17925-PA 451 GK17925-PA 6..451 41..516 1345 57.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14200-PA 520 GE14200-PA 1..520 1..518 2246 85.8 Plus

RE49550.hyp Sequence

Translation from 77 to 1633

> RE49550.hyp
MALTITKFRTSRGMVVAVQPTVVLSPKIPDSQDNEKKPFSKSEPGNATVR
VNAGGIVLNKIPAIIRPSMKRAATTKMTGATAAGATTTTSSTGAVGYPVL
KTPKYVVQTSPSGSSGHQLQMLARKDTQSLGVAINSLPPNTIIKATTRPS
QTAPLTPNSAAVTPSTPSSSRNSTQSTPTVVPDARVSSAVRQAVFIKREL
PQPQRSMRNMTLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCL
TLRKLKQNEHFALLAEHFELSESDVEDTFKRTLIKLARYLRPLIRWPDAR
HHNERFKHTPLNYRANLLHVRSLIECVETDVPIDLGLGSGSYKFILCINT
NGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPGKAVRRARRS
GFGDPHDSADEDEAAAEPKRSLTKFEAQRLSGQLASQQSLSVVDGALTSK
RAPAIQLPTFNAQEPACRAQMRDMIDYLREFRMLDNSAIKQKSLLGYLDE
MIVVAAGLCNLKRQELES*

RE49550.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-PA 518 CG6568-PA 1..518 1..518 2632 100 Plus
CG6568-PB 450 CG6568-PB 1..450 69..518 2294 100 Plus