BDGP Sequence Production Resources |
Search the DGRC for RE49550
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 495 |
Well: | 50 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6568-RA |
Protein status: | RE49550.pep: gold |
Preliminary Size: | 1353 |
Sequenced Size: | 1827 |
Gene | Date | Evidence |
---|---|---|
CG6568 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6568 | 2002-06-10 | Blastp of sequenced clone |
CG6568 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6568 | 2008-04-29 | Release 5.5 accounting |
CG6568 | 2008-08-15 | Release 5.9 accounting |
CG6568 | 2008-12-18 | 5.12 accounting |
1827 bp (1827 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121689
> RE49550.complete AGTTATAGAATTATTTTTGGCCAAACCAGAGTAACTCATTTCGCTCTTGG ATTGAAGATGTTTTTAAGGCCGCTTTAATGGCGTTGACAATTACAAAATT TCGAACTTCGAGGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTGA GCCCCAAAATACCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAAA TCGGAGCCGGGAAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTCT TAACAAAATACCAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACAA CAAAGATGACTGGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTCA ACAGGTGCAGTGGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTCA GACTAGTCCGAGTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGGA AGGACACTCAAAGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACACA ATCATCAAAGCAACCACAAGACCTTCACAAACAGCGCCTTTGACACCAAA CTCAGCGGCTGTCACGCCAAGCACGCCGAGCAGTAGCAGGAATTCCACTC AGTCCACACCAACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGCGC CAAGCTGTGTTCATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATGCG AAATATGACACTTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGGTG TTGCGCCACAGCACCTGTCACTGCTGAAACGCCATATCTGCCGCAATGCT AATGTCACCCACTTGGACTGTTGCTTGACTCTAAGGAAACTCAAACAAAA CGAGCACTTCGCCCTGTTGGCCGAGCACTTTGAGCTGAGCGAATCAGATG TCGAGGACACATTTAAGCGCACCCTTATCAAGCTGGCCCGTTACCTCCGT CCACTGATTCGTTGGCCAGATGCACGGCATCACAACGAGCGCTTCAAACA TACCCCACTGAACTACCGAGCCAACCTGTTGCATGTACGCTCGTTGATCG AGTGTGTGGAAACGGACGTGCCGATAGATCTGGGATTGGGCAGCGGCAGC TATAAGTTCATATTGTGCATCAATACAAATGGCATCATCAGCTATGTGTC TAGCGCCTTTCCTGGTAGTTGCGATGATCTTCAATTGTTTGAGGCCAGCA GATTTCGGGATGTCATTCCCAATTACCTAACACTATGCGCGGAACCAGGC AAAGCAGTACGCCGTGCTCGCAGGTCGGGCTTCGGAGATCCTCACGACTC AGCGGATGAGGATGAGGCGGCGGCGGAACCAAAGCGATCACTTACCAAAT TCGAGGCACAGCGTTTGAGTGGCCAGCTAGCAAGCCAGCAATCCCTATCC GTTGTAGACGGAGCACTGACTTCCAAGCGGGCTCCAGCGATTCAACTACC CACATTCAACGCACAAGAACCCGCCTGTAGAGCCCAAATGAGAGATATGA TAGATTATTTAAGGGAATTCCGCATGCTGGATAATTCGGCTATTAAGCAA AAGTCATTGCTGGGTTATCTTGATGAAATGATCGTGGTGGCTGCGGGTCT ATGCAACCTTAAGCGCCAAGAGTTGGAATCTTAAATAAGAAGTGCCATCC GCGAAGGTCTGTTTAAAGGCCAACCAGATGTTATTGTCCTAGTTATTTTA AGAATTTAATTTAATGTATTGTTAATGCAATGTAGAAACTGACTATTAAC AAGTACGATTAAAAGGGTATATTTTAAAGTATTTCAAAGAATAAACACTA CGTGGTCATCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6568-RA | 1814 | CG6568-RA | 1..1813 | 1..1813 | 9050 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13293092..13293857 | 1132..367 | 3785 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 13292362..13293040 | 1809..1131 | 3395 | 100 | Minus |
chr2R | 21145070 | chr2R | 13293931..13294113 | 366..184 | 915 | 100 | Minus |
chr2R | 21145070 | chr2R | 13294297..13294481 | 185..1 | 910 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17406036..17406801 | 1132..367 | 3830 | 100 | Minus |
2R | 25286936 | 2R | 17405302..17405984 | 1813..1131 | 3400 | 99.9 | Minus |
2R | 25286936 | 2R | 17407241..17407425 | 185..1 | 925 | 100 | Minus |
2R | 25286936 | 2R | 17406875..17407057 | 366..184 | 915 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17407235..17408000 | 1132..367 | 3830 | 100 | Minus |
2R | 25260384 | 2R | 17406501..17407183 | 1813..1131 | 3400 | 99.8 | Minus |
2R | 25260384 | 2R | 17408440..17408624 | 185..1 | 925 | 100 | Minus |
2R | 25260384 | 2R | 17408074..17408256 | 366..184 | 915 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
BS | 5142 | BS BS 5142bp | 2000..2073 | 277..350 | 145 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2930..3006 | 288..361 | 144 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2446 | 290..359 | 143 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1479..1587 | 252..358 | 142 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 290..360 | 137 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6790 | 290..354 | 134 | 70.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6032..6094 | 294..359 | 134 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6835 | 290..360 | 130 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1141 | 290..360 | 130 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2484 | 288..352 | 127 | 66.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7487..7544 | 294..354 | 127 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2510 | 255..360 | 125 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2395 | 290..353 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2419 | 290..359 | 116 | 62.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13294297..13294481 | 1..185 | 99 | Minus | |
chr2R | 13293931..13294111 | 186..366 | 100 | <- | Minus |
chr2R | 13292360..13293039 | 1132..1811 | 99 | <- | Minus |
chr2R | 13293093..13293857 | 367..1131 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1557 | 78..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1557 | 78..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1557 | 78..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1557 | 78..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1557 | 78..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1811 | 1..1811 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1811 | 1..1811 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 3..1813 | 1..1811 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 1..1811 | 1..1811 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6568-RA | 3..1813 | 1..1811 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17405304..17405983 | 1132..1811 | 99 | <- | Minus |
2R | 17406037..17406801 | 367..1131 | 100 | <- | Minus |
2R | 17406875..17407055 | 186..366 | 100 | <- | Minus |
2R | 17407241..17407425 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17405304..17405983 | 1132..1811 | 99 | <- | Minus |
2R | 17406037..17406801 | 367..1131 | 100 | <- | Minus |
2R | 17406875..17407055 | 186..366 | 100 | <- | Minus |
2R | 17407241..17407425 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17405304..17405983 | 1132..1811 | 99 | <- | Minus |
2R | 17406037..17406801 | 367..1131 | 100 | <- | Minus |
2R | 17406875..17407055 | 186..366 | 100 | <- | Minus |
2R | 17407241..17407425 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13292809..13293488 | 1132..1811 | 99 | <- | Minus |
arm_2R | 13293542..13294306 | 367..1131 | 100 | <- | Minus |
arm_2R | 13294380..13294560 | 186..366 | 100 | <- | Minus |
arm_2R | 13294746..13294930 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17406503..17407182 | 1132..1811 | 99 | <- | Minus |
2R | 17407236..17408000 | 367..1131 | 100 | <- | Minus |
2R | 17408074..17408254 | 186..366 | 100 | <- | Minus |
2R | 17408440..17408624 | 1..185 | 100 | Minus |
Translation from 77 to 1633
> RE49550.pep MALTITKFRTSRGMVVAVQPTVVLSPKIPDSQDNEKKPFSKSEPGNATVR VNAGGIVLNKIPAIIRPSMKRAATTKMTGATAAGATTTTSSTGAVGYPVL KTPKYVVQTSPSGSSGHQLQMLARKDTQSLGVAINSLPPNTIIKATTRPS QTAPLTPNSAAVTPSTPSSSRNSTQSTPTVVPDARVSSAVRQAVFIKREL PQPQRSMRNMTLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCL TLRKLKQNEHFALLAEHFELSESDVEDTFKRTLIKLARYLRPLIRWPDAR HHNERFKHTPLNYRANLLHVRSLIECVETDVPIDLGLGSGSYKFILCINT NGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPGKAVRRARRS GFGDPHDSADEDEAAAEPKRSLTKFEAQRLSGQLASQQSLSVVDGALTSK RAPAIQLPTFNAQEPACRAQMRDMIDYLREFRMLDNSAIKQKSLLGYLDE MIVVAAGLCNLKRQELES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13411-PA | 457 | GF13411-PA | 42..454 | 101..515 | 1514 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22203-PA | 521 | GG22203-PA | 1..521 | 1..518 | 2259 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20875-PA | 466 | GH20875-PA | 1..466 | 1..514 | 1318 | 54.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Camp-PA | 518 | CG6568-PA | 1..518 | 1..518 | 2632 | 100 | Plus |
Camp-PB | 450 | CG6568-PB | 1..450 | 69..518 | 2294 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20986-PA | 481 | GI20986-PA | 1..481 | 1..514 | 1280 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10256-PA | 463 | GL10256-PA | 2..463 | 36..518 | 1405 | 59.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19690-PA | 463 | GA19690-PA | 2..463 | 36..518 | 1456 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19989-PA | 513 | GM19989-PA | 1..513 | 1..518 | 2373 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25484-PA | 520 | GD25484-PA | 1..520 | 1..518 | 2426 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20706-PA | 485 | GJ20706-PA | 1..485 | 1..514 | 1314 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17925-PA | 451 | GK17925-PA | 6..451 | 41..516 | 1345 | 57.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14200-PA | 520 | GE14200-PA | 1..520 | 1..518 | 2246 | 85.8 | Plus |
Translation from 77 to 1633
> RE49550.hyp MALTITKFRTSRGMVVAVQPTVVLSPKIPDSQDNEKKPFSKSEPGNATVR VNAGGIVLNKIPAIIRPSMKRAATTKMTGATAAGATTTTSSTGAVGYPVL KTPKYVVQTSPSGSSGHQLQMLARKDTQSLGVAINSLPPNTIIKATTRPS QTAPLTPNSAAVTPSTPSSSRNSTQSTPTVVPDARVSSAVRQAVFIKREL PQPQRSMRNMTLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCL TLRKLKQNEHFALLAEHFELSESDVEDTFKRTLIKLARYLRPLIRWPDAR HHNERFKHTPLNYRANLLHVRSLIECVETDVPIDLGLGSGSYKFILCINT NGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPGKAVRRARRS GFGDPHDSADEDEAAAEPKRSLTKFEAQRLSGQLASQQSLSVVDGALTSK RAPAIQLPTFNAQEPACRAQMRDMIDYLREFRMLDNSAIKQKSLLGYLDE MIVVAAGLCNLKRQELES*