BDGP Sequence Production Resources |
Search the DGRC for RE49565
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 495 |
Well: | 65 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5500-RA |
Protein status: | RE49565.pep: gold |
Preliminary Size: | 706 |
Sequenced Size: | 873 |
Gene | Date | Evidence |
---|---|---|
CG5500 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5500 | 2002-11-12 | Blastp of sequenced clone |
CG5500 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5500 | 2008-04-29 | Release 5.5 accounting |
CG5500 | 2008-08-15 | Release 5.9 accounting |
CG5500 | 2008-12-18 | 5.12 accounting |
873 bp (873 high quality bases) assembled on 2002-11-12
GenBank Submission: AY075497
> RE49565.complete AGGGCTGCATTATTGTTTGTTAGTTTTGCTGTTTGGTTTTTAACAAATTT CCTGGTTTTCCCTCAAAAACCCTCTCTTATATAAATAAATCAAGTGCAAA ATGCTGAGTCCATAACAACACACTTCCTGCGGAACCAAGTTCATCTGGGC TGCACCTGCGCAGGCGTGTGAAATGCTCATCACTTCCTCTGGGCCTTTTC AATCGTAACTTTCGAACTCTTTCGGGGATCGGGCGGAAATGTTGGCTCCC CTGGGCTTCAGCTGTCCGCGATGCTTGCTCCTGCGACGTGGCGCCGAGCG TTGGGCCTCACTGGCCCGCCAATTGTCGGGCAGCAGCTCCCAGGATGATG CCAGCAGCAAGGATGCGGCCGCCCAGGAGGCAGCAAGTGGCTGTCCGCCC AATAGCACAACGACGGGCACTGACACTCCCAAAGCCAAAGATAAAACCAC CAAGGGAAGGAAGCGGCTCAGAAACATAGAGATACCTCCCGAGCCCACCA CCTGCTGCATGTCGGGCTGCGCCAACTGCGTTTGGCTGGACTACGCACAG ACGCTGGCCAAGCTGCTGGGCGACAACGATGAGGAGGCGCGAGAGATTGT GCTGAGCAAGATCACCGACCCGAACCTGAAGATGTTCCTCAGCCTGGAGC TGCGCCAGATGGCTAAGCAGCGGGAGGAGAAGGCGGCGGCGGAGAAAGCA GCGAAGCAGGGAAAGCCAAAGAAATCCTCGCCCCCGCCGTAGTACAAATC CCCGCTCACCTAAATATCTAGTTAGGACCAAATTCGTAGTAGCTCAAATT TACTCTTGTACTTAGTGTGTAAGAACTAAGAAACCTCAAAATAAACATGT AAGAGTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5500-RA | 920 | CG5500-RA | 22..877 | 1..856 | 4280 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 22703211..22703587 | 480..856 | 1885 | 100 | Plus |
chr3R | 27901430 | chr3R | 22702607..22702964 | 124..481 | 1790 | 100 | Plus |
chr3R | 27901430 | chr3R | 22699761..22699883 | 1..123 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 26880083..26880459 | 480..856 | 1885 | 100 | Plus |
3R | 32079331 | 3R | 26879479..26879836 | 124..481 | 1790 | 100 | Plus |
3R | 32079331 | 3R | 26876633..26876755 | 1..123 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26620914..26621290 | 480..856 | 1885 | 100 | Plus |
3R | 31820162 | 3R | 26620310..26620667 | 124..481 | 1790 | 100 | Plus |
3R | 31820162 | 3R | 26617464..26617586 | 1..123 | 615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22702607..22702964 | 124..481 | 100 | -> | Plus |
chr3R | 22699761..22699883 | 1..123 | 100 | -> | Plus |
chr3R | 22703213..22703587 | 482..857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..504 | 239..742 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..504 | 239..742 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..504 | 239..742 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..504 | 239..742 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..504 | 239..742 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..856 | 1..856 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..856 | 1..856 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 4..859 | 1..856 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 1..856 | 1..856 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5500-RA | 4..859 | 1..856 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26876633..26876755 | 1..123 | 100 | -> | Plus |
3R | 26879479..26879836 | 124..481 | 100 | -> | Plus |
3R | 26880085..26880459 | 482..857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26876633..26876755 | 1..123 | 100 | -> | Plus |
3R | 26879479..26879836 | 124..481 | 100 | -> | Plus |
3R | 26880085..26880459 | 482..857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26876633..26876755 | 1..123 | 100 | -> | Plus |
3R | 26879479..26879836 | 124..481 | 100 | -> | Plus |
3R | 26880085..26880459 | 482..857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22702355..22702477 | 1..123 | 100 | -> | Plus |
arm_3R | 22705201..22705558 | 124..481 | 100 | -> | Plus |
arm_3R | 22705807..22706181 | 482..857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26620310..26620667 | 124..481 | 100 | -> | Plus |
3R | 26620916..26621290 | 482..857 | 99 | Plus | |
3R | 26617464..26617586 | 1..123 | 100 | -> | Plus |
Translation from 238 to 741
> RE49565.pep MLAPLGFSCPRCLLLRRGAERWASLARQLSGSSSQDDASSKDAAAQEAAS GCPPNSTTTGTDTPKAKDKTTKGRKRLRNIEIPPEPTTCCMSGCANCVWL DYAQTLAKLLGDNDEEAREIVLSKITDPNLKMFLSLELRQMAKQREEKAA AEKAAKQGKPKKSSPPP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16461-PA | 171 | GF16461-PA | 1..155 | 1..144 | 488 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11508-PA | 164 | GG11508-PA | 1..162 | 1..166 | 617 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10459-PA | 115 | GH10459-PA | 40..108 | 79..147 | 291 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5500-PA | 167 | CG5500-PA | 1..167 | 1..167 | 869 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23053-PA | 64 | GI23053-PA | 1..58 | 91..148 | 238 | 70.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27228-PA | 128 | GL27228-PA | 1..127 | 1..166 | 334 | 54.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18931-PA | 128 | GA18931-PA | 1..127 | 1..165 | 339 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10350-PA | 167 | GM10350-PA | 1..167 | 1..167 | 831 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21312-PA | 167 | GD21312-PA | 1..167 | 1..167 | 715 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24637-PA | 114 | GJ24637-PA | 1..114 | 1..159 | 302 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13547-PA | 122 | GK13547-PA | 1..106 | 1..146 | 351 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23698-PA | 165 | GE23698-PA | 1..163 | 1..166 | 656 | 88.6 | Plus |
Translation from 238 to 741
> RE49565.hyp MLAPLGFSCPRCLLLRRGAERWASLARQLSGSSSQDDASSKDAAAQEAAS GCPPNSTTTGTDTPKAKDKTTKGRKRLRNIEIPPEPTTCCMSGCANCVWL DYAQTLAKLLGDNDEEAREIVLSKITDPNLKMFLSLELRQMAKQREEKAA AEKAAKQGKPKKSSPPP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5500-PA | 167 | CG5500-PA | 1..167 | 1..167 | 869 | 100 | Plus |